Mercurial > repos > rnateam > graphclust_align_cluster

comparison test-data/alignment2.rnaz.out @ 0:c05c83b3ef0f draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
author rnateam
date Sat, 27 Oct 2018 13:21:39 -0400
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-1:000000000000 0:c05c83b3ef0f
1
2 ############################ RNAz 2.1 ##############################
3
4 Sequences: 5
5 Columns: 70
6 Reading direction: forward
7 Mean pairwise identity: 99.43
8 Shannon entropy: 0.01031
9 G+C content: 0.49714
10 Mean single sequence MFE: -14.75
11 Consensus MFE: -14.41
12 Energy contribution: -14.41
13 Covariance contribution: 0.00
14 Combinations/Pair: 1.00
15 Mean z-score: -0.20
16 Structure conservation index: 0.98
17 Background model: dinucleotide
18 Decision model: structural RNA alignment quality
19 SVM decision value: -1.57
20 SVM RNA-class probability: 0.014380
21 Prediction: OTHER
22
23 ######################################################################
24
25 >SEQ4_526_595_+
26 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
27 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
28 >SEQ5_526_595_+
29 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
30 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
31 >SEQ16_526_595_+
32 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
33 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
34 >SEQ19_523_592_+
35 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
36 (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R)
37 >SEQ14_529_598_+
38 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUUCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
39 (((((((.((((..((((((....)))))).....))))..)))))))............((....)).. ( -16.10, z-score = -0.67, R)
40 >consensus
41 CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
42 (((((((...((((((((((....))))).......))))))))))))............((....)).. (-14.41 = -14.41 + 0.00)