--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/alignment1.rnaz.out	Sat Oct 27 13:21:39 2018 -0400
@@ -0,0 +1,42 @@
+
+############################  RNAz 2.1  ##############################
+
+ Sequences: 5
+ Columns: 51
+ Reading direction: forward
+ Mean pairwise identity:  44.05
+ Shannon entropy: 1.03471
+ G+C content: 0.31965
+ Mean single sequence MFE:  -5.08
+ Consensus MFE:  -7.64
+ Energy contribution:  -3.12
+ Covariance contribution:  -4.52
+ Combinations/Pair:   2.89
+ Mean z-score:   0.22
+ Structure conservation index:   1.50
+ Background model: dinucleotide
+ Decision model: structural RNA alignment quality
+ SVM decision value:   3.53
+ SVM RNA-class probability: 0.999916
+ Prediction: RNA
+
+######################################################################
+
+>SEQ47_2_50_+
+AGGUAU-UAGAAAAAC-CAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC
+.(((..-.......))-)......((((((.....)))))).......... (  -4.20, z-score =   0.02, S)
+>SEQ42_1_50_+
+GUAAAUAUAGUUUAAC-CAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC
+.........((((...-..)))).((((((.....)))))).......... (  -5.90, z-score =  -0.43, R)
+>SEQ41_1_50_+
+ACUCUUUUAGUAUAAA-UAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC
+.........((((...-..)))).(((((.......))))).......... (  -1.80, z-score =   1.22, R)
+>SEQ39_1_50_+
+GUUCUUGUAGUUGAAA-UACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGU
+....(((((.......-)))))(((((((.......)))))))........ (  -7.30, z-score =  -0.10, R)
+>SEQ34_1_51_+
+CAGAGAAUAGUUUAAAUUAGAAUCUUAGCUUUGGGUGCUAAUGGUGGAGUU
+..............((((...((((((((.......))))).)))..)))) (  -6.20, z-score =   0.37, R)
+>consensus
+AUGAAUAUAGUUUAAA_UAGAACAUUAGAUUUUCAAACUAAUAGUAGAGGC
+.........((((......)))).(((((.......))))).......... ( -7.64 =  -3.12 +  -4.52)