--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/alignment2.rnaz.out	Sat Oct 27 13:21:39 2018 -0400
@@ -0,0 +1,42 @@
+
+############################  RNAz 2.1  ##############################
+
+ Sequences: 5
+ Columns: 70
+ Reading direction: forward
+ Mean pairwise identity:  99.43
+ Shannon entropy: 0.01031
+ G+C content: 0.49714
+ Mean single sequence MFE: -14.75
+ Consensus MFE: -14.41
+ Energy contribution: -14.41
+ Covariance contribution:   0.00
+ Combinations/Pair:   1.00
+ Mean z-score:  -0.20
+ Structure conservation index:   0.98
+ Background model: dinucleotide
+ Decision model: structural RNA alignment quality
+ SVM decision value:  -1.57
+ SVM RNA-class probability: 0.014380
+ Prediction: OTHER
+
+######################################################################
+
+>SEQ4_526_595_+
+CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
+(((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score =  -0.08, R)
+>SEQ5_526_595_+
+CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
+(((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score =  -0.08, R)
+>SEQ16_526_595_+
+CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
+(((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score =  -0.08, R)
+>SEQ19_523_592_+
+CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
+(((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score =  -0.08, R)
+>SEQ14_529_598_+
+CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUUCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
+(((((((.((((..((((((....)))))).....))))..)))))))............((....)).. ( -16.10, z-score =  -0.67, R)
+>consensus
+CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
+(((((((...((((((((((....))))).......))))))))))))............((....)).. (-14.41 = -14.41 +   0.00)