Mercurial > repos > rnateam > graphclust_align_cluster
view test-data/alignment2.rnaz.out @ 0:c05c83b3ef0f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
author | rnateam |
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date | Sat, 27 Oct 2018 13:21:39 -0400 |
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############################ RNAz 2.1 ############################## Sequences: 5 Columns: 70 Reading direction: forward Mean pairwise identity: 99.43 Shannon entropy: 0.01031 G+C content: 0.49714 Mean single sequence MFE: -14.75 Consensus MFE: -14.41 Energy contribution: -14.41 Covariance contribution: 0.00 Combinations/Pair: 1.00 Mean z-score: -0.20 Structure conservation index: 0.98 Background model: dinucleotide Decision model: structural RNA alignment quality SVM decision value: -1.57 SVM RNA-class probability: 0.014380 Prediction: OTHER ###################################################################### >SEQ4_526_595_+ CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R) >SEQ5_526_595_+ CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R) >SEQ16_526_595_+ CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R) >SEQ19_523_592_+ CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC (((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score = -0.08, R) >SEQ14_529_598_+ CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUUCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC (((((((.((((..((((((....)))))).....))))..)))))))............((....)).. ( -16.10, z-score = -0.67, R) >consensus CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC (((((((...((((((((((....))))).......))))))))))))............((....)).. (-14.41 = -14.41 + 0.00)