Mercurial > repos > rnateam > graphclust_cmfinder

comparison cmFinder.xml @ 8:5a1dcc77b0ce draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/GraphClust/CMFinder commit 4406735e44aba20859c252be39f4e99df28c7a92
author rnateam
date Sat, 27 Oct 2018 13:22:16 -0400
parents 68bfc8df36f8
children
comparison
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7:68bfc8df36f8 8:5a1dcc77b0ce
1 <tool id="cmFinder" name="cmfinder" version="0.3" > 1 <tool id="cmFinder" name="cmfinder" version="0.4" >
2 <requirements> 2 <requirements>
3 <requirement type="package" version="0.5.2">graphclust-wrappers</requirement> 3 <requirement type="package" version="0.6.0">graphclust-wrappers</requirement>
4 <requirement type="package" version='0.2'>cmfinder</requirement> 4 <requirement type="package" version='0.2'>cmfinder</requirement>
5 <requirement type="package" version='2.2.10'>viennarna</requirement> 5 <requirement type="package" version='2.2.10'>viennarna</requirement>
6 </requirements> 6 </requirements>
7 <stdio> 7 <stdio>
8 <exit_code range="1:" /> 8 <exit_code range="1:" />
54 At first it converts CLUSTAL format files to STOCKHOLM format. Then using *CMFinder* determines consensus 54 At first it converts CLUSTAL format files to STOCKHOLM format. Then using *CMFinder* determines consensus
55 motives for sequences. 55 motives for sequences.
56 ]]> 56 ]]>
57 </help> 57 </help>
58 <citations> 58 <citations>
59 <citation type="bibtex">@inproceedings{costa2010fast,
60 title={Fast neighborhood subgraph pairwise distance kernel},
61 author={Costa, Fabrizio and De Grave, Kurt},
62 booktitle={Proceedings of the 26th International Conference on Machine Learning},
63 pages={255--262},
64 year={2010},
65 organization={Omnipress}
66 }
67 </citation>
68 <citation type="doi">10.1093/bioinformatics/btk008</citation> 59 <citation type="doi">10.1093/bioinformatics/btk008</citation>
69 <citation type="doi">10.1186/1748-7188-6-26</citation> 60 <citation type="doi">10.5281/zenodo.597695</citation>
70 </citations> 61 </citations>
71 </tool> 62 </tool>