Mercurial > repos > rnateam > graphclust_nspdk
comparison NSPDK_candidateClusters.xml @ 7:25fd145b498a draft
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/NSPDK commit 6767a5ffb02052c844e9d862c79912f998f39d8e
author | rnateam |
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date | Mon, 20 Nov 2017 04:51:56 -0500 |
parents | 2aaf391798a3 |
children | 90da74fd1c5c |
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6:2aaf391798a3 | 7:25fd145b498a |
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1 <tool id="NSPDK_candidateClust" name="NSPDK_candidateClusters" version="9.2"> | 1 <tool id="NSPDK_candidateClust" name="NSPDK_candidateClusters" version="9.2.2" > |
2 <requirements> | 2 <requirements> |
3 <requirement type="package" version="0.1.12">graphclust-wrappers</requirement> | 3 <requirement type="package" version="0.5.2">graphclust-wrappers</requirement> |
4 <requirement type="package" version="0.5">perl-array-utils</requirement> | 4 <requirement type="package" version="9.2" >nspdk</requirement> |
5 <requirement type="package" version="9.2">nspdk</requirement> | |
6 </requirements> | 5 </requirements> |
7 <stdio> | 6 <stdio> |
8 <exit_code range="1:" /> | 7 <exit_code range="1:" /> |
9 </stdio> | 8 </stdio> |
10 <command> | 9 <command> |
39 $iteration_num.GLOBAL_hit_blacklist_overlap | 38 $iteration_num.GLOBAL_hit_blacklist_overlap |
40 #end if | 39 #end if |
41 ]]> | 40 ]]> |
42 </command> | 41 </command> |
43 <inputs> | 42 <inputs> |
44 <param type="data" name="data_svector" multiple="True"/> | 43 <param type="data" name="data_svector" format="zip" multiple="True"/> |
45 <param type="data" name="data_fasta" format="fasta" /> | 44 <param type="data" name="data_fasta" format="fasta" /> |
46 <param type="data" name="data_names" format="txt" /> | 45 <param type="data" name="data_names" format="txt" /> |
47 <conditional name="iteration_num"> | 46 <conditional name="iteration_num"> |
48 <param name="iteration_num_selector" type="boolean" checked="no" label="Multiple iterations" help="for single iteration- NO, for multiple-YES"/> | 47 <param name="iteration_num_selector" type="boolean" checked="no" label="Multiple iterations" help="for single iteration- NO, for multiple-YES"/> |
49 <when value="true"> | 48 <when value="true"> |
94 </outputs> | 93 </outputs> |
95 <tests> | 94 <tests> |
96 <test> | 95 <test> |
97 <param name="data_fasta" value="data.fasta"/> | 96 <param name="data_fasta" value="data.fasta"/> |
98 <param name="data_names" value="data.names"/> | 97 <param name="data_names" value="data.names"/> |
99 <param name="data_svector" value="1.group.gspan" /> | 98 <param name="data_svector" value="1.data.gspan" ftype="zip" /> |
100 <conditional name="iteration_num"> | 99 <conditional name="iteration_num"> |
101 <param name="iteration_num_selector" value="false"/> | 100 <param name="iteration_num_selector" value="false"/> |
102 </conditional> | 101 </conditional> |
103 <param name="noCache" value="-no-cache"/> | 102 <param name="noCache" value="-no-cache"/> |
104 <param name="ensf" value="5"/> | 103 <param name="ensf" value="5"/> |