Mercurial > repos > rnateam > graphclust_postprocessing

comparison glob_report.xml @ 7:870dfc90473f draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit b3fe72d71e27a7b66621ecaae3e2da4bc4ca6986
author rnateam
date Thu, 23 Feb 2017 13:03:17 -0500
parents 869a6e807d76
children 9a69a6098b71
comparison
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6:869a6e807d76 7:870dfc90473f
6 <requirement type="package" version='1.8.10'>locarna</requirement> 6 <requirement type="package" version='1.8.10'>locarna</requirement>
7 <requirement type="package" version='2.1'>rnaz</requirement> 7 <requirement type="package" version='2.1'>rnaz</requirement>
8 <requirement type="package" version="1.1">infernal</requirement> 8 <requirement type="package" version="1.1">infernal</requirement>
9 <requirement type="package" version='2.2.10'>viennarna</requirement> 9 <requirement type="package" version='2.2.10'>viennarna</requirement>
10 <requirement type="package" version='1.3.23'>graphicsmagick</requirement> 10 <requirement type="package" version='1.3.23'>graphicsmagick</requirement>
11 <requirement type="package" version='0.3.1'>rscape</requirement>
12
11 </requirements> 13 </requirements>
12 <stdio> 14 <stdio>
13 <exit_code range="1:" /> 15 <exit_code range="1:" />
14 </stdio> 16 </stdio>
15 <command> 17 <command>
27 29
28 #for $mods in $model_tree_files: 30 #for $mods in $model_tree_files:
29 #set $inputFilesTrees += str($mods)+',' 31 #set $inputFilesTrees += str($mods)+','
30 #end for 32 #end for
31 #set $inputFilesTrees = $inputFilesTrees[:-1] 33 #set $inputFilesTrees = $inputFilesTrees[:-1]
32 'glob_res.pl' 34 'glob_res.pl'
33 '$inputFiles' 35 '$inputFiles'
34 $merge_cluster_ol 36 $merge_cluster_ol
35 $merge_overlap 37 $merge_overlap
36 $min_cluster_size 38 $min_cluster_size
37 $cm_min_bitscore 39 $cm_min_bitscore
151 <discover_datasets format="png" pattern="(?P&lt;name&gt;^.*\.alirna.png$)" /> 153 <discover_datasets format="png" pattern="(?P&lt;name&gt;^.*\.alirna.png$)" />
152 </collection> 154 </collection>
153 <collection name="topDot" type="list" label="Top $results_top_num aln.ps"> 155 <collection name="topDot" type="list" label="Top $results_top_num aln.ps">
154 <discover_datasets format="png" pattern="(?P&lt;name&gt;^.*\.aln.png$)" /> 156 <discover_datasets format="png" pattern="(?P&lt;name&gt;^.*\.aln.png$)" />
155 </collection> 157 </collection>
158 <collection name="rscapePlot" type="list" label="R-scape Plot">
159 <discover_datasets format="pdf" pattern="(?P&lt;name&gt;^.*\.pdf$)" />
160 </collection>
156 <data name="RESULTS_zip" format="zip" from_work_dir="RESULTS.zip" label="RESULTS.zip" /> 161 <data name="RESULTS_zip" format="zip" from_work_dir="RESULTS.zip" label="RESULTS.zip" />
157 </outputs> 162 </outputs>
158 <tests> 163 <tests>
159 <test> 164 <test>
160 <param name="FASTA" value="FASTA.zip" ftype="searchgui_archive"/> 165 <param name="FASTA" value="FASTA.zip" ftype="searchgui_archive"/>
210 <element name="1.cluster.top5.aln.png" file="1.cluster.top5.aln.png" ftype="png" compare="sim_size" /> 215 <element name="1.cluster.top5.aln.png" file="1.cluster.top5.aln.png" ftype="png" compare="sim_size" />
211 <element name="2.cluster.top5.aln.png" file="2.cluster.top5.aln.png" ftype="png" compare="sim_size" /> 216 <element name="2.cluster.top5.aln.png" file="2.cluster.top5.aln.png" ftype="png" compare="sim_size" />
212 <element name="3.cluster.top5.aln.png" file="3.cluster.top5.aln.png" ftype="png" compare="sim_size" /> 217 <element name="3.cluster.top5.aln.png" file="3.cluster.top5.aln.png" ftype="png" compare="sim_size" />
213 <element name="4.cluster.top5.aln.png" file="4.cluster.top5.aln.png" ftype="png" compare="sim_size" /> 218 <element name="4.cluster.top5.aln.png" file="4.cluster.top5.aln.png" ftype="png" compare="sim_size" />
214 </output_collection> 219 </output_collection>
215 <output name="RESULTS_zip" file="RESULTS.zip" ftype="zip" compare="sim_size" /> 220
221 <output_collection name="rscapePlot" type="list">
222 <element name="1.cluster.top5.result.aln_1.R2R.sto.pdf" file="1.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" />
223 <element name="2.cluster.top5.result.aln_1.R2R.sto.pdf" file="2.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" />
224 <element name="3.cluster.top5.result.aln_1.R2R.sto.pdf" file="3.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" />
225 <element name="4.cluster.top5.result.aln_1.R2R.sto.pdf" file="4.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" />
226 </output_collection>
227
228 <output name="RESULTS_zip" file="RESULTS.zip" ftype="zip" compare="sim_size" delta="20000"/>
216 229
217 </test> 230 </test>
218 </tests> 231 </tests>
219 <help> 232 <help>
220 <![CDATA[ 233 <![CDATA[