Mercurial > repos > rnateam > graphclust_postprocessing
diff glob_report.xml @ 12:b5f49453af8c draft
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 65d322f9ab2f24d65b307f3553589149a1d678d5
author | rnateam |
---|---|
date | Wed, 31 May 2017 14:53:30 -0400 |
parents | e080ebe95476 |
children | 23dc3b4545d5 |
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--- a/glob_report.xml Sat Mar 25 16:50:38 2017 -0400 +++ b/glob_report.xml Wed May 31 14:53:30 2017 -0400 @@ -1,6 +1,6 @@ <tool id="glob_report" name="cluster_collection_report" version="0.1"> <requirements> - <requirement type="package" version="0.1.12">graphclust-wrappers</requirement> + <requirement type="package" version="0.2.0">graphclust-wrappers</requirement> <requirement type="package" version='0.5'>perl-array-utils</requirement> <requirement type="package" version='0.18.1'>scikit-learn</requirement> <requirement type="package" version='1.8.10'>locarna</requirement> @@ -172,8 +172,9 @@ <tests> <test> <param name="FASTA" value="FASTA.zip" ftype="searchgui_archive"/> - <param name="cmsearch_results" value="1.tabular,2.tabular,3.tabular,4.tabular,5.tabular"/> - <param name="model_tree_files" value="1.1.model.tree.fa,1.2.model.tree.fa,1.3.model.tree.fa,1.4.model.tree.fa,1.5.model.tree.fa"/> + <param name="cmsearch_results" value="1.1.tree,1.2.tree"/> + <param name="model_tree_files" value="1.1.model.tree.fa,1.2.model.tree.fa"/> + <param name="combined_cm_out" value="combined_cm_out"/> <param name="partition_type" value="0"/> <param name="cut_type" value="0"/> <conditional name="iteration_num"> @@ -184,26 +185,23 @@ <param name="min_cluster_size" value="3"/> <param name="cm_min_bitscore" value="20"/> <param name="cm_max_eval" value="0.001"/> - <param name="cm_bitscore_sig" value="1"/> + <param name="cm_bitscore_sig" value="0"/> <output name="final_stats" file="RESULTS/cluster.final.stats" /> <output_collection name="clusters" type="list"> <element name="1.cluster.all" file="RESULTS/1.cluster.all" compare="contains"/> <element name="2.cluster.all" file="RESULTS/2.cluster.all" compare="contains"/> - <element name="3.cluster.all" file="RESULTS/3.cluster.all" compare="contains"/> - <element name="4.cluster.all" file="RESULTS/4.cluster.all" compare="contains"/> + </output_collection> <output_collection name="partitions"> <element name="final_overlap.map" file="RESULTS/partitions/final_overlap.map" compare="contains"> <assert_contents> - <has_text text="1.1 1.1 1.2" /> - <has_text text="1.3 1.3" /> - <has_text text="1.4 1.4" /> - <has_text text="1.5 1.5 " /> + <has_text text="1.1 1.1 " /> + <has_text text="1.2 1.2" /> </assert_contents> </element> <element name="final_overlap.matrix" file="RESULTS/partitions/final_overlap.matrix" compare="contains"> <assert_contents> - <has_text text="MODEL CLASS 0 0 0 0 0" /> + <has_text text="MODEL CLASS 0 0" /> <!--has_text text="1.2" /> <has_text text="1.1" /--> </assert_contents> @@ -217,21 +215,15 @@ <output_collection name="topSecondaryStruct" type="list"> <element name="1.cluster.top5.alirna.png" file="1.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> <element name="2.cluster.top5.alirna.png" file="2.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> - <element name="3.cluster.top5.alirna.png" file="3.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> - <element name="4.cluster.top5.alirna.png" file="4.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> </output_collection> <output_collection name="topDot" type="list"> <element name="1.cluster.top5.aln.png" file="1.cluster.top5.aln.png" ftype="png" compare="sim_size" /> <element name="2.cluster.top5.aln.png" file="2.cluster.top5.aln.png" ftype="png" compare="sim_size" /> - <element name="3.cluster.top5.aln.png" file="3.cluster.top5.aln.png" ftype="png" compare="sim_size" /> - <element name="4.cluster.top5.aln.png" file="4.cluster.top5.aln.png" ftype="png" compare="sim_size" /> </output_collection> <output_collection name="rscapePlot" type="list"> <element name="1.cluster.top5.result.aln_1.R2R.sto.pdf" file="1.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" /> <element name="2.cluster.top5.result.aln_1.R2R.sto.pdf" file="2.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" /> - <element name="3.cluster.top5.result.aln_1.R2R.sto.pdf" file="3.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" /> - <element name="4.cluster.top5.result.aln_1.R2R.sto.pdf" file="4.cluster.top5.result.aln_1.R2R.sto.pdf" ftype="pdf" compare="sim_size" /> </output_collection> <output name="RESULTS_zip" file="RESULTS.zip" ftype="zip" compare="sim_size" delta="20000"/>