# HG changeset patch # User rnateam # Date 1496256810 14400 # Node ID b5f49453af8c0e91c2dba91e1d16e6f0b4cda586 # Parent e080ebe95476f2c93529e8943bc63414c633ce2f planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 65d322f9ab2f24d65b307f3553589149a1d678d5 diff -r e080ebe95476 -r b5f49453af8c evaluation.py --- a/evaluation.py Sat Mar 25 16:50:38 2017 -0400 +++ b/evaluation.py Wed May 31 14:53:30 2017 -0400 @@ -1,3 +1,4 @@ +#!/usr/bin/env python2 import glob from os import system import re @@ -10,56 +11,64 @@ dataNames = "FASTA/data.names" listOfClusters = [] -listOfClasses = [] +listOfHeaders = [] +headersNames = set() cluster_seqs_stats_path = "RESULTS/*.cluster.all" cluster_seqs_stats_files = glob.glob(cluster_seqs_stats_path) +with open(dataNames, "r") as names: + for line2 in names: + splits2 = line2.split() + fullHeader = '' + if len(splits2) >= 6: + fullHeader = splits2[5] + headersNames.add(fullHeader) + blackList = [] numberOfClusters = 0 for singleFile in sorted(cluster_seqs_stats_files): numberOfClusters += 1 with open(singleFile, "r") as f: - for line in f.readlines(): - uniqueId = line.split()[8] - clustNum = line.split()[2] - rnaClass, sep, tail = uniqueId.partition("_") - listOfClasses.append(rnaClass) + for line in f: + splits = line.split() + header = '' + if len(splits) >= 11: + header = splits[10] + clustNum = splits[2] + listOfHeaders.append(header) listOfClusters.append(clustNum) - with open(dataNames, "r") as names: - for line in names.readlines(): - fullUniqeId = line.split()[3] - rnaClass, sep, tail = fullUniqeId.partition("_") - if fullUniqeId == uniqueId: - blackList.append(uniqueId) + if header in headersNames: + blackList.append(header) numberOfClusters += 1 # 1 cluster for all unassigned seqs with open(dataNames, "r") as names: for line in names.readlines(): - fullUniqeId = line.split()[3] - rnaClass, sep, tail = fullUniqeId.partition("_") - rnaClass, sep, tail = fullUniqeId.partition("_") - if fullUniqeId not in blackList: - listOfClasses.append(rnaClass) + splits = line.split() + fullUniqeId = splits[3] + fullHeader = '' + if len(splits) >= 6: + fullHeader = line.split()[5] + if fullHeader not in blackList or len(fullHeader) == 0: + listOfHeaders.append(fullHeader) listOfClusters.append(str(numberOfClusters)) numberOfClusters += 1 # separate cluster for all unassigned seqs toWrite = "" for i in range(len(listOfClusters)): - toWrite += listOfClasses[i] + "\t" + listOfClusters[i] + '\n' + toWrite += listOfHeaders[i] + "\t" + listOfClusters[i] + '\n' with open("RESULTS/fullTab.tabular", "w") as full: full.write(toWrite) pattern = re.compile("^RF.*$") - -if len(listOfClasses) > 0 and pattern.match(str(listOfClasses[0])): +if len(listOfHeaders) > 1: # and pattern.match(str(listOfHeaders[0])): - completeness_score = metrics.completeness_score(listOfClasses, listOfClusters) - homogeneity_score = metrics.homogeneity_score(listOfClasses, listOfClusters) - adjusted_rand_score = metrics.adjusted_rand_score(listOfClasses, listOfClusters) - adjusted_mutual_info_score = metrics.adjusted_mutual_info_score(listOfClasses, listOfClusters) - v_measure_score = metrics.v_measure_score(listOfClasses, listOfClusters) + completeness_score = metrics.completeness_score(listOfHeaders, listOfClusters) + homogeneity_score = metrics.homogeneity_score(listOfHeaders, listOfClusters) + adjusted_rand_score = metrics.adjusted_rand_score(listOfHeaders, listOfClusters) + adjusted_mutual_info_score = metrics.adjusted_mutual_info_score(listOfHeaders, listOfClusters) + v_measure_score = metrics.v_measure_score(listOfHeaders, listOfClusters) toWrite = "completeness_score : " + str(completeness_score) + "\n" + "homogeneity_score : " + str(homogeneity_score) + "\n" + "adjusted_rand_score : " +str(adjusted_rand_score) + "\n" + "adjusted_mutual_info_score : " + str(adjusted_mutual_info_score)+ "\n" + "v_measure_score : " + str(v_measure_score) diff -r e080ebe95476 -r b5f49453af8c glob_report.xml --- a/glob_report.xml Sat Mar 25 16:50:38 2017 -0400 +++ b/glob_report.xml Wed May 31 14:53:30 2017 -0400 @@ -1,6 +1,6 @@ - graphclust-wrappers + graphclust-wrappers perl-array-utils scikit-learn locarna @@ -172,8 +172,9 @@ - - + + + @@ -184,26 +185,23 @@ - + - - + - - - - + + - + @@ -217,21 +215,15 @@ - - - - - - diff -r e080ebe95476 -r b5f49453af8c test-data/1.1.model.tree.fa --- a/test-data/1.1.model.tree.fa Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/1.1.model.tree.fa Wed May 31 14:53:30 2017 -0400 @@ -1,40 +1,40 @@ ->15 SEQ5#23#72#+ ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 -CACUCUGGACUUUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUGGGACCU ->19 SEQ7#26#75#+ ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 -CGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCAC ->20 SEQ7#34#83#+ ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 -UCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUUCUGACA ->26 SEQ10#24#73#+ ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 -GCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG ->27 SEQ11#1#50#+ ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 -GCAGCGAUGGCCGAGUGGUUAAGGCGUUGGACUUGAAAUCCAAUGGGGUC ->28 SEQ11#26#75#+ ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 -GUUGGACUUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCU ->29 SEQ11#33#82#+ ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 -UUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCUCGCUGCG ->30 SEQ12#1#50#+ ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 -GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUUGAAAUCCAUUGGGGUU ->31 SEQ12#26#75#+ ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 -GAUGGACUUGAAAUCCAUUGGGGUUUCCCCGCGCAGGUUCGAAUCCUGUC ->32 SEQ12#33#82#+ ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 -UUGAAAUCCAUUGGGGUUUCCCCGCGCAGGUUCGAAUCCUGUCGGCUACG ->33 SEQ13#1#50#+ ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 -GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUAGAAAUCCAUUGGGGUU ->34 SEQ13#26#75#+ ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 -GAUGGACUAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCC ->35 SEQ13#33#82#+ ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 -UAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCCGACUACG ->47 SEQ19#26#75#+ ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 -GAGCAGACUCUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCC ->48 SEQ19#33#82#+ ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 -CUCUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCA ->50 SEQ20#23#72#+ ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 -GCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU ->54 SEQ22#23#72#+ ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 -CACGGAGAAUUUUGGAUUCUCAGGGAUGGGUUCGAUUCUCAUAGUCCUAG ->84 SEQ37#26#75#+ ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 -CGCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACC ->85 SEQ37#33#82#+ ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 -UUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA ->111 SEQ50#24#73#+ ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 -GCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG +>9 SEQ7#1#83#+ ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005 +GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUUCUGACA +>11 SEQ9#1#73#+ ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005 +GCUUCUGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA +>12 SEQ10#1#73#+ ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005 +GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG +>15 SEQ13#1#82#+ ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005 +GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCCGACUACG +>18 SEQ16#1#72#+ ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005 +GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA +>19 SEQ17#1#71#+ ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005 +GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA +>20 SEQ18#1#72#+ ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005 +GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA +>25 SEQ23#1#74#+ ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005 +GGCCGGUUAGCUCAGUUGGUUAGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCA +>30 SEQ28#1#71#+ ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005 +GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA +>32 SEQ30#1#72#+ ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005 +GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC +>33 SEQ31#1#73#+ ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005 +GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA +>34 SEQ32#1#73#+ ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005 +GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA +>35 SEQ33#1#72#+ ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005 +UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG +>37 SEQ35#1#72#+ ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005 +UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCGCGCCCCGGGUUCGAUUCCCGGCCAGGAAU +>39 SEQ37#1#82#+ ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005 +GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA +>48 SEQ46#1#72#+ ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005 +UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA +>53 SEQ51#1#88#+ ORIGID RF00006_rep.0_AF045145.1/1-88_51 ORIGHEAD RF00006 +GGCUGGCUUUAGCUCAGCGGUUACUUCGCGUGUCAUCAAACCACCUCUCUGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGCCCUCUU +>54 SEQ52#2#101#+ ORIGID RF00006_rep.1_AC005219.1/49914-50014_52 ORIGHEAD RF00006 +GGUCGGAGUUAGCUCAAGCGGUUACCUCCUCAUGCCGGACUUUCUAUCUGUCCAUCUCUGUGCUGGGGUUCGAGACCCGCGGGUGCUUACUGACCCUUUU +>55 SEQ53#1#98#+ ORIGID RF00006_rep.2_AF045143.1/1-98_53 ORIGHEAD RF00006 +GGCUGGCUUUAGCUCAGCGGUUACUUCGACAGUUCUUUAAUUGAAACAAGCAACCUGUCUGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGUCCUUUU +>56 SEQ54#1#88#+ ORIGID RF00006_rep.3_AF045144.1/1-88_54 ORIGHEAD RF00006 +GGCUGGCUUUAGCUCAGCGGUUACUUCGAGUACAUUGUAACCACCUCUCUGGGUGGUUCGAGACCCGCGGGUGCUUUCCAGCUCUUUU diff -r e080ebe95476 -r b5f49453af8c test-data/1.1.tree --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/1.1.tree Wed May 31 14:53:30 2017 -0400 @@ -0,0 +1,47 @@ +SEQ31 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 88.9 1.2e-150 ! ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005 +SEQ11 - dataset_60 - cm 1 73 1 82 + no 1 0.62 0.0 88.3 8e-150 ! ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005 +SEQ9 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 87.8 4.6e-149 ! ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005 +SEQ32 - dataset_60 - cm 1 73 1 73 + no 1 0.58 0.0 87.3 2.6e-148 ! ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005 +SEQ13 - dataset_60 - cm 1 73 1 82 + no 1 0.56 0.0 86.3 8.9e-147 ! ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005 +SEQ36 - dataset_60 - cm 1 73 1 73 + no 1 0.51 0.0 83.0 1.1e-141 ! ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005 +SEQ12 - dataset_60 - cm 1 73 1 82 + no 1 0.57 0.0 82.7 3.1e-141 ! ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005 +SEQ26 - dataset_60 - cm 1 73 1 72 + no 1 0.50 0.0 82.0 4.9e-140 ! ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005 +SEQ5 - dataset_60 - cm 1 73 1 72 + no 1 0.51 0.0 81.7 1.3e-139 ! ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005 +SEQ50 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 80.8 3.1e-138 ! ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005 +SEQ28 - dataset_60 - cm 1 73 1 71 + no 1 0.62 0.0 80.7 4.6e-138 ! ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005 +SEQ15 - dataset_60 - cm 1 73 1 73 + no 1 0.53 0.0 80.6 5.9e-138 ! ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005 +SEQ24 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 80.3 1.5e-137 ! ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005 +SEQ4 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 79.2 7.3e-136 ! ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005 +SEQ46 - dataset_60 - cm 1 73 1 72 + no 1 0.65 0.0 78.4 1.3e-134 ! ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005 +SEQ17 - dataset_60 - cm 1 73 1 71 + no 1 0.59 0.0 77.7 1.6e-133 ! ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005 +SEQ37 - dataset_60 - cm 1 73 1 82 + no 1 0.63 0.0 76.3 2.5e-131 ! ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005 +SEQ10 - dataset_60 - cm 1 73 1 73 + no 1 0.62 0.0 76.3 2.8e-131 ! ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005 +SEQ23 - dataset_60 - cm 1 73 1 74 + no 1 0.61 0.0 75.9 1.2e-130 ! ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005 +SEQ20 - dataset_60 - cm 1 73 1 72 + no 1 0.56 0.0 75.8 1.7e-130 ! ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005 +SEQ30 - dataset_60 - cm 1 73 1 72 + no 1 0.61 0.0 74.9 4e-129 ! ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005 +SEQ16 - dataset_60 - cm 1 73 1 72 + no 1 0.61 0.0 74.9 4e-129 ! ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005 +SEQ21 - dataset_60 - cm 1 73 1 74 + no 1 0.61 0.0 74.8 4.8e-129 ! ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005 +SEQ18 - dataset_60 - cm 1 73 1 72 + no 1 0.58 0.0 72.9 4.3e-126 ! ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005 +SEQ35 - dataset_60 - cm 1 73 1 72 + no 1 0.65 0.0 71.9 1.2e-124 ! ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005 +SEQ45 - dataset_60 - cm 1 73 1 72 + no 1 0.60 0.0 71.6 4.5e-124 ! ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005 +SEQ7 - dataset_60 - cm 1 73 1 83 + no 1 0.63 0.0 71.2 2e-123 ! ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005 +SEQ33 - dataset_60 - cm 1 73 1 72 + no 1 0.62 0.0 69.2 2e-120 ! ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005 +SEQ19 - dataset_60 - cm 1 73 1 82 + no 1 0.59 0.0 69.0 4e-120 ! ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005 +SEQ22 - dataset_60 - cm 1 73 1 72 + no 1 0.49 0.0 48.1 5.1e-88 ! ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005 +SEQ40 - dataset_60 - cm 1 73 1 66 + no 1 0.45 0.0 44.2 4.7e-82 ! ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005 +SEQ29 - dataset_60 - cm 1 73 1 66 + no 1 0.42 0.0 31.0 8.7e-62 ! ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005 +SEQ14 - dataset_60 - cm 1 73 1 73 + no 1 0.41 0.0 29.5 2.2e-59 ! ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005 +SEQ39 - dataset_60 - cm 1 73 1 69 + no 1 0.39 0.0 21.6 2.5e-47 ! ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005 +SEQ48 - dataset_60 - cm 1 73 1 71 + no 1 0.35 0.0 12.9 5.7e-34 ! ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005 +SEQ34 - dataset_60 - cm 1 73 1 68 + no 1 0.34 0.0 12.8 9.6e-34 ! ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005 +SEQ6 - dataset_60 - cm 1 73 1 66 + no 1 0.38 0.0 12.1 1.1e-32 ! ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005 +SEQ42 - dataset_60 - cm 1 73 1 69 + no 1 0.38 0.0 9.4 1.4e-28 ! ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005 +SEQ8 - dataset_60 - cm 1 73 1 70 + no 1 0.33 0.0 9.0 6.2e-28 ! ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005 +SEQ27 - dataset_60 - cm 1 73 1 69 + no 1 0.43 0.0 8.6 3.1e-27 ! ORIGID RF00005_rep.30_AL132988.4/95773-95841_27 ORIGHEAD RF00005 +SEQ41 - dataset_60 - cm 1 73 1 68 + no 1 0.26 0.1 7.7 6e-26 ! ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005 +SEQ43 - dataset_60 - cm 1 73 1 71 + no 1 0.41 0.0 4.3 1.1e-20 ! ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005 +SEQ25 - dataset_60 - cm 1 73 1 69 + no 1 0.29 0.0 4.2 1.8e-20 ! ORIGID RF00005_rep.29_AF381996.2/4265-4333_25 ORIGHEAD RF00005 +SEQ44 - dataset_60 - cm 1 73 1 69 + no 1 0.42 0.0 1.2 6.2e-16 ! ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005 +SEQ38 - dataset_60 - cm 1 73 1 65 + no 1 0.23 0.5 -0.9 1.1e-12 ! ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005 +SEQ47 - dataset_60 - cm 1 73 1 68 + no 1 0.24 0.5 -1.5 9.1e-12 ! ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005 +SEQ49 - dataset_60 - cm 1 73 1 68 + no 1 0.35 0.0 -4.4 2.9e-07 ! ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005 diff -r e080ebe95476 -r b5f49453af8c test-data/1.2.model.tree.fa --- a/test-data/1.2.model.tree.fa Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/1.2.model.tree.fa Wed May 31 14:53:30 2017 -0400 @@ -1,40 +1,40 @@ ->23 SEQ9#1#50#+ ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -GCUUCUGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCC ->24 SEQ9#24#73#+ ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -ACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA ->39 SEQ15#24#73#+ ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 -GCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA ->43 SEQ17#22#71#+ ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 -AAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA ->45 SEQ18#23#72#+ ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 -CAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA ->51 SEQ21#1#50#+ ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 -GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUG ->52 SEQ21#25#74#+ ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 -GCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG ->66 SEQ28#22#71#+ ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 -AAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA ->70 SEQ30#23#72#+ ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 -AUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC ->71 SEQ31#1#50#+ ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCC ->72 SEQ31#24#73#+ ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -ACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA ->73 SEQ32#1#50#+ ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 -GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCC ->74 SEQ32#24#73#+ ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 -ACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA ->76 SEQ33#23#72#+ ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 -UAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG ->80 SEQ35#23#72#+ ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 -GAUUCGGCGCUUUCACCGCCGCGCCCCGGGUUCGAUUCCCGGCCAGGAAU ->81 SEQ36#1#50#+ ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 -GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCC ->82 SEQ36#24#73#+ ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 -ACGUUCGCCUAACACGCGAAAGGUCCCUGGAUCAAAACCAGGCGGAAACA ->103 SEQ46#23#72#+ ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 -GAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA ->113 SEQ51#26#75#+ ORIGID RF00006_rep.0_AF045145.1/1-88_51 ORIGHEAD RF00006_rep.0 -UCGCGUGUCAUCAAACCACCUCUCUGGGUUGUUCGAGACCCGCGGGCGCU ->159 SEQ69#26#75#+ ORIGID RF00049_rep.0_X52138.1/3930-4011_69 ORIGHEAD RF00049_rep.0 -CGGCCUCGAAAUUCACUCGUCGAAGAGUCAAAACCGAGCUUUUUAACACU +>1 SEQ1#1#100#+ ORIGID RF00001_rep.0_AL096764.11/46123-46004_1 ORIGHEAD RF00001 +GUCUAUGGCCAUACCACCCUGAAUGUGCUUGAUCUCAUCUGAUCUCGUGAAGCCAAGCAGGGUGGGGCCUAGUUAGUACUUGGAUGGGAGACUUCCUGGG +>2 SEQ1#21#120#+ ORIGID RF00001_rep.0_AL096764.11/46123-46004_1 ORIGHEAD RF00001 +GAAUGUGCUUGAUCUCAUCUGAUCUCGUGAAGCCAAGCAGGGUGGGGCCUAGUUAGUACUUGGAUGGGAGACUUCCUGGGAAUAUAAGCUGCUGUUGGCU +>3 SEQ2#1#100#+ ORIGID RF00001_rep.1_U89919.1/939-1056_2 ORIGHEAD RF00001 +CUUUACGGCCACACCACCCUGAACGCACCGGAUCUCGACUGACCUUGAAAGCUAAGCAGGAUCGGGCCUGGUUAGUAUUGGGAUGGCAGACCCCCUGGAA +>4 SEQ2#19#118#+ ORIGID RF00001_rep.1_U89919.1/939-1056_2 ORIGHEAD RF00001 +CUGAACGCACCGGAUCUCGACUGACCUUGAAAGCUAAGCAGGAUCGGGCCUGGUUAGUAUUGGGAUGGCAGACCCCCUGGAAAUACAGGGUGCUGAAGGU +>5 SEQ3#5#104#+ ORIGID RF00001_rep.2_AJ508600.1/161-58_3 ORIGHEAD RF00001 +ACAGCCAUACCAUCCUGAACAUGCCAGAUCUUGUCUGACCUCUGAAGCUAAGCAGGGUCAAGCCUGGUUAGUACUUGGGAGAAGCUGGUGUGGCUAGACC +>31 SEQ29#1#66#+ ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005 +GGUAAAAUGGCUGAGUGAAGCAUUGGACUGUAAAUCUAAAGACAGGGGUUAGGCCUCUUUUUACCA +>59 SEQ56#1#95#+ ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019 +GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCCCACUGCUAAAUUUGACUGGCUUUU +>60 SEQ57#3#102#+ ORIGID RF00019_rep.2_ABBA01033605.1/1707-1808_57 ORIGHEAD RF00019 +CUGGUCCGAGUGCAGUGGUGUUUACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACUCCCACUGCUUCACUUGACUAGCCUUUU +>62 SEQ59#1#79#+ ORIGID RF00027_rep.0_AF480570.1/1-79_59 ORIGHEAD RF00027 +GUGAGGUAGUAAGUUGUAUUGUUGUGGGGUAGGGAUAUUAGGCCCCAAUUAGAAGAUAACUAUACAACUUACUACUUUC +>69 SEQ66#1#71#+ ORIGID RF00031_rep.4_AF195141.1/689-759_66 ORIGHEAD RF00031 +GACUGACAUUAUGAAGGCCUGUACUGAAGACAGCAAGCUGUUAGUACAGACCAGAUGCUUUCUUGGCAGGC +>75 SEQ72#1#100#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGGGCAGUACUGCUAACUCCUGCACAACACACCGAAAUCAACUAGAGCUUUGC +>76 SEQ72#27#126#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618 +CUGUCCAAUGGGUACCUAGUGAGGGCAGUACUGCUAACUCCUGCACAACACACCGAAAUCAACUAGAGCUUUGCUUUGCCUUGGUGCAGUUUUUGGAGAA +>77 SEQ73#1#100#+ ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGGGCAGUACUGCUAACGUCUACACAACACACCCACCUCAACUAGAGCUUUGC +>78 SEQ73#27#126#+ ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618 +CUGUCCAAAGAGCAUGUAGUGAGGGCAGUACUGCUAACGUCUACACAACACACCCACCUCAACUAGAGCUUUGCUUUAGCUUGGUGUAAUUUUUGGAAAA +>79 SEQ74#1#100#+ ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGGGCAGUACUGCUAACGCCUGAACAACACACCCGCAUCAACUAGAGCUUUUG +>80 SEQ74#28#127#+ ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618 +UGUCCAAUGAGCGCAUAGUGAGGGCAGUACUGCUAACGCCUGAACAACACACCCGCAUCAACUAGAGCUUUUGCUUUAUUUUGGUGCAAUUUUUGGAAAA +>81 SEQ75#1#100#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGGGCAGUAUUGCUAACGCCUAUACAAUGCACCUGCAUCAACUAGAACUUUGC +>82 SEQ75#27#126#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618 +CUGUCUAAUGAGUGCAUAAUGAGGGCAGUAUUGCUAACGCCUAUACAAUGCACCUGCAUCAACUAGAACUUUGCUUUACCUUGGUACAAUUUUUGGAAAA +>90 SEQ83#1#79#+ ORIGID RF00641_rep.3_AADD01141098.1/2614-2692_83 ORIGHEAD RF00641 +GCUACUUGAAGAGAGGUAAUCCUUCAUGCAUUUGCUUUACUUGCAAUGAUUAUACAAGGGCAGACUCUCUCUGGGGAGC +>94 SEQ87#1#78#+ ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641 +GGUACCUGAAAUAGGUUGCCUGUGAGGUGUUCACUUUCUAUAUGAUGAAUAUUAUACAGUCAACCUCUUUCCGAUAUC diff -r e080ebe95476 -r b5f49453af8c test-data/1.2.tree --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/1.2.tree Wed May 31 14:53:30 2017 -0400 @@ -0,0 +1,4 @@ +SEQ74 - dataset_61 - cm 1 100 1 100 + no 1 0.51 0.0 163.2 7.9e-68 ! ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618 +SEQ72 - dataset_61 - cm 1 100 1 100 + no 1 0.49 0.0 163.1 8.9e-68 ! ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618 +SEQ73 - dataset_61 - cm 1 100 1 100 + no 1 0.49 0.0 161.5 3.4e-67 ! ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618 +SEQ75 - dataset_61 - cm 1 100 1 100 + no 1 0.44 0.0 160.5 8.2e-67 ! ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618 diff -r e080ebe95476 -r b5f49453af8c test-data/1.3.model.tree.fa --- a/test-data/1.3.model.tree.fa Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,40 +0,0 @@ ->17 SEQ6#17#66#+ ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 -CUAAUACACCAGUCUUGUAAACCGGAGAUGAAAACCUUUUUCCAAGGACA ->21 SEQ8#1#50#+ ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 -CACUGUAAAGCUAACUUAGCAUUAACCUUUUAAGUUAAAGAUUAAGAGAA ->22 SEQ8#21#70#+ ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 -AUUAACCUUUUAAGUUAAAGAUUAAGAGAACCAACACCUCUUUACAGUGA ->60 SEQ25#20#69#+ ORIGID RF00005_rep.29_AF381996.2/4265-4333_25 ORIGHEAD RF00005_rep.29 -GAGUUACUUUGAUAGAGUAAAUAAUAGGAGCUUAAACCCCCUUAUUUCUA ->86 SEQ38#1#50#+ ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 -UGGUAUAUAGUUUAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAU ->92 SEQ41#1#50#+ ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 -ACUCUUUUAGUAUAAAUAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC ->93 SEQ41#19#68#+ ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 -GUACCGUUAACUUCCAAUUAACUAGUUUUGACAACAUUCAAAAAAGAGUA ->94 SEQ42#1#50#+ ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 -GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC ->96 SEQ43#1#50#+ ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 -GUUUAUGUAGCUUACCUCCUCAAAGCAAUACACUGAAAAUGUUUAGACGG ->97 SEQ43#22#71#+ ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 -AAAGCAAUACACUGAAAAUGUUUAGACGGGCUCACAUCACCCCAUAAACA ->98 SEQ44#1#50#+ ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 -CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAA ->104 SEQ47#1#50#+ ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 -AAGGUAUUAGAAAAACCAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC ->105 SEQ47#19#68#+ ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 -UUUCAUAACUUUGUCAAAGUUAAAUUAUAGGCUAAAUCCUAUAUAUCUUA ->108 SEQ49#1#50#+ ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 -AGAAAUUUAGGUUAAAUACAGACCAAGAGCCUUCAAAGCCCUCAGUAAGU ->109 SEQ49#19#68#+ ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 -CAGACCAAGAGCCUUCAAAGCCCUCAGUAAGUUGCAAUACUUAAUUUCUG ->129 SEQ56#26#75#+ ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 -CAGAACUUAUUAACAUUAGUGUCACUAAAGUUGGUAUACAACCCCCCACU ->132 SEQ57#26#75#+ ORIGID RF00019_rep.2_ABBA01033605.1/1707-1808_57 ORIGHEAD RF00019_rep.2 -ACAACUAAUUGAUCACAACCAGUUACAGAUUUCUUUGUUCCUUCUCCACU ->135 SEQ58#26#75#+ ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 -UGUUAAGUUGAUUUAACAUUGUCUCCCCCCACAACCGCGCUUGACUAGCU ->195 SEQ82#32#81#+ ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 -UUCUCUUUAUUUAUGAUGAAACAUACACGGGAAACCUCUUUUUUAGUAUC ->205 SEQ87#29#78#+ ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -GUUCACUUUCUAUAUGAUGAAUAUUAUACAGUCAACCUCUUUCCGAUAUC diff -r e080ebe95476 -r b5f49453af8c test-data/1.4.model.tree.fa --- a/test-data/1.4.model.tree.fa Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,40 +0,0 @@ ->12 SEQ4#1#50#+ ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 -GGCUCCAUAGCUCAGGGGUUAGAGCACUGGUCUUGUAAACCAGGGGUCGC ->141 SEQ60#38#87#+ ORIGID RF00027_rep.1_AC048341.22/3536-3622_60 ORIGHEAD RF00027_rep.1 -GUGACAUUGCCCGCUGUGGAGAUAACUGCGCAAGCUACUGCCUUGCUAGU ->145 SEQ62#13#62#+ ORIGID RF00031_rep.0_X71973.1/730-791_62 ORIGHEAD RF00031_rep.0 -ACGGCCUGCCUGCAAACCUGCUGGUGGGGCAGACCCGAAAAUCCAGCGUG ->151 SEQ65#8#57#+ ORIGID RF00031_rep.3_X53463.1/847-903_65 ORIGHEAD RF00031_rep.3 -AAUGAUGGCACCUUCCUAAACCCUCAUGGGUGGUGUCUGAGAGGCGUGAA ->156 SEQ68#1#50#+ ORIGID RF00031_rep.6_BC003127.1/865-928_68 ORIGHEAD RF00031_rep.6 -GUCACUGCAUGAUCCGCUCUGGUCAAACCCUUCCAGGCCAGCCAGAGUGG ->157 SEQ68#15#64#+ ORIGID RF00031_rep.6_BC003127.1/865-928_68 ORIGHEAD RF00031_rep.6 -CGCUCUGGUCAAACCCUUCCAGGCCAGCCAGAGUGGGGAUGGUCUGUGAC ->165 SEQ72#1#50#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGG ->166 SEQ72#26#75#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 -ACUGUCCAAUGGGUACCUAGUGAGGGCAGUACUGCUAACUCCUGCACAAC ->167 SEQ72#51#100#+ ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 -GCAGUACUGCUAACUCCUGCACAACACACCGAAAUCAACUAGAGCUUUGC ->169 SEQ73#1#50#+ ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGG ->170 SEQ73#26#75#+ ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 -ACUGUCCAAAGAGCAUGUAGUGAGGGCAGUACUGCUAACGUCUACACAAC ->171 SEQ73#51#100#+ ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 -GCAGUACUGCUAACGUCUACACAACACACCCACCUCAACUAGAGCUUUGC ->173 SEQ74#1#50#+ ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 -ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGG ->174 SEQ74#26#75#+ ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 -ACUGUCCAAUGAGCGCAUAGUGAGGGCAGUACUGCUAACGCCUGAACAAC ->175 SEQ74#51#100#+ ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 -GCAGUACUGCUAACGCCUGAACAACACACCCGCAUCAACUAGAGCUUUUG ->177 SEQ75#1#50#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGG ->178 SEQ75#26#75#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 -ACUGUCUAAUGAGUGCAUAAUGAGGGCAGUAUUGCUAACGCCUAUACAAU ->179 SEQ75#51#100#+ ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 -GCAGUAUUGCUAACGCCUAUACAAUGCACCUGCAUCAACUAGAACUUUGC ->212 SEQ90#17#66#+ ORIGID RF00693_rep.0_AADD01093451.1/1636-1571_90 ORIGHEAD RF00693_rep.0 -UUCUGCACACAAUAAAGAAACUAGUGUACAGAAAUGUUUACUUGUCUAUG ->214 SEQ91#20#69#+ ORIGID RF00693_rep.1_AL031669.28/23303-23371_91 ORIGHEAD RF00693_rep.1 -UGCACAACCAGAAUACUCAAACUAGCAUGAGGAAAGGCUUCUGUAACAGU diff -r e080ebe95476 -r b5f49453af8c test-data/1.5.model.tree.fa --- a/test-data/1.5.model.tree.fa Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,40 +0,0 @@ ->8 SEQ2#69#118#+ ORIGID RF00001_rep.1_U89919.1/939-1056_2 ORIGHEAD RF00001_rep.1 -UGGUUAGUAUUGGGAUGGCAGACCCCCUGGAAAUACAGGGUGCUGAAGGU ->37 SEQ14#24#73#+ ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 -GUGCUUAGCUGUUAACUAAGUGUUUGUGGGUUUAAGUCCCAUUGGUCUAG ->44 SEQ18#1#50#+ ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 -GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCG ->53 SEQ22#1#50#+ ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 -UAGGAUGGGGUGUGAUAGGUGGCACGGAGAAUUUUGGAUUCUCAGGGAUG ->65 SEQ28#1#50#+ ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 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Wed May 31 14:53:30 2017 -0400 @@ -1,35 +1,47 @@ -SEQ24 - dataset_5036 - cm 1 41 26 66 + no 1 0.56 0.0 44.3 1.4e-08 ! ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 -SEQ15 - dataset_5036 - cm 1 41 26 66 + no 1 0.51 0.0 44.1 1.5e-08 ! ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 -SEQ46 - dataset_5036 - cm 1 41 26 65 + no 1 0.75 0.0 43.5 2.1e-08 ! ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 -SEQ5 - dataset_5036 - cm 1 41 26 65 + no 1 0.47 0.0 43.3 2.2e-08 ! ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 -SEQ37 - dataset_5036 - cm 1 41 27 75 + no 1 0.59 0.0 43.0 2.6e-08 ! ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 -SEQ26 - dataset_5036 - cm 1 41 26 65 + no 1 0.50 0.0 42.9 2.6e-08 ! ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005_rep.2 -SEQ35 - dataset_5036 - cm 1 41 26 65 + no 1 0.75 0.1 42.0 4.1e-08 ! ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 -SEQ50 - dataset_5036 - cm 1 41 25 66 + no 1 0.48 0.0 40.8 7.3e-08 ! ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 -SEQ11 - dataset_5036 - cm 1 41 26 75 + no 1 0.58 0.0 40.5 8.4e-08 ! ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 -SEQ21 - dataset_5036 - cm 1 41 27 67 + no 1 0.59 0.0 40.0 1.1e-07 ! ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 -SEQ13 - dataset_5036 - cm 1 41 26 75 + no 1 0.54 0.0 40.0 1.1e-07 ! ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 -SEQ12 - dataset_5036 - cm 1 41 26 75 + no 1 0.54 0.0 39.8 1.2e-07 ! ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 -SEQ28 - dataset_5036 - cm 1 41 25 64 + no 1 0.75 0.0 39.7 1.2e-07 ! ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 -SEQ18 - dataset_5036 - cm 1 41 25 65 + no 1 0.61 0.0 39.4 1.4e-07 ! ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 -SEQ33 - dataset_5036 - cm 1 41 26 65 + no 1 0.73 0.0 39.4 1.5e-07 ! ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 -SEQ4 - dataset_5036 - cm 1 41 25 66 + no 1 0.52 0.0 39.3 1.5e-07 ! ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 -SEQ9 - dataset_5036 - cm 1 41 26 66 + no 1 0.66 0.0 39.2 1.6e-07 ! ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -SEQ31 - dataset_5036 - cm 1 41 26 66 + no 1 0.66 0.0 39.2 1.6e-07 ! ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -SEQ7 - dataset_5036 - cm 1 41 27 76 + no 1 0.64 0.0 39.0 1.8e-07 ! ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 -SEQ17 - dataset_5036 - cm 1 41 25 64 + no 1 0.70 0.0 38.7 2e-07 ! ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 -SEQ23 - dataset_5036 - cm 1 41 27 67 + no 1 0.59 0.0 38.6 2.1e-07 ! ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 -SEQ20 - dataset_5036 - cm 1 41 24 65 + no 1 0.48 0.0 38.2 2.6e-07 ! ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 -SEQ10 - dataset_5036 - cm 1 41 25 66 + no 1 0.57 0.0 37.5 3.6e-07 ! ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 -SEQ45 - dataset_5036 - cm 1 41 25 65 + no 1 0.59 0.0 37.4 3.7e-07 ! ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005_rep.4 -SEQ30 - dataset_5036 - cm 1 41 25 65 + no 1 0.61 0.0 37.4 3.8e-07 ! ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 -SEQ32 - dataset_5036 - cm 1 41 25 66 + no 1 0.67 0.0 37.0 4.4e-07 ! ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 -SEQ16 - dataset_5036 - cm 1 41 25 65 + no 1 0.66 0.0 35.6 8.9e-07 ! ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 -SEQ19 - dataset_5036 - cm 1 41 26 75 + no 1 0.50 0.0 35.1 1.2e-06 ! ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 -SEQ36 - dataset_5036 - cm 1 41 26 66 + no 1 0.56 0.0 34.4 1.6e-06 ! ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 -SEQ14 - dataset_5036 - cm 1 41 26 66 + no 1 0.39 0.0 33.9 2e-06 ! ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 -SEQ22 - dataset_5036 - cm 1 41 26 65 + no 1 0.43 0.0 31.6 5.9e-06 ! ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 -SEQ39 - dataset_5036 - cm 1 41 23 62 + no 1 0.45 0.0 26.1 8.3e-05 ! ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 -SEQ48 - dataset_5036 - cm 1 41 24 64 + no 1 0.41 0.0 26.1 8.5e-05 ! ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 -SEQ29 - dataset_5036 - cm 1 41 21 59 + no 1 0.44 0.0 24.3 0.0002 ! ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 -SEQ40 - dataset_5036 - cm 1 41 20 59 + no 1 0.40 0.0 15.3 0.015 ? ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005_rep.42 +SEQ31 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 88.9 1.2e-150 ! ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005 +SEQ11 - dataset_60 - cm 1 73 1 82 + no 1 0.62 0.0 88.3 8e-150 ! ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005 +SEQ9 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 87.8 4.6e-149 ! ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005 +SEQ32 - dataset_60 - cm 1 73 1 73 + no 1 0.58 0.0 87.3 2.6e-148 ! ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005 +SEQ13 - dataset_60 - cm 1 73 1 82 + no 1 0.56 0.0 86.3 8.9e-147 ! ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005 +SEQ36 - dataset_60 - cm 1 73 1 73 + no 1 0.51 0.0 83.0 1.1e-141 ! ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005 +SEQ12 - dataset_60 - cm 1 73 1 82 + no 1 0.57 0.0 82.7 3.1e-141 ! ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005 +SEQ26 - dataset_60 - cm 1 73 1 72 + no 1 0.50 0.0 82.0 4.9e-140 ! ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005 +SEQ5 - dataset_60 - cm 1 73 1 72 + no 1 0.51 0.0 81.7 1.3e-139 ! ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005 +SEQ50 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 80.8 3.1e-138 ! ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005 +SEQ28 - dataset_60 - cm 1 73 1 71 + no 1 0.62 0.0 80.7 4.6e-138 ! ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005 +SEQ15 - dataset_60 - cm 1 73 1 73 + no 1 0.53 0.0 80.6 5.9e-138 ! ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005 +SEQ24 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 80.3 1.5e-137 ! ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005 +SEQ4 - dataset_60 - cm 1 73 1 73 + no 1 0.56 0.0 79.2 7.3e-136 ! ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005 +SEQ46 - dataset_60 - cm 1 73 1 72 + no 1 0.65 0.0 78.4 1.3e-134 ! ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005 +SEQ17 - dataset_60 - cm 1 73 1 71 + no 1 0.59 0.0 77.7 1.6e-133 ! ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005 +SEQ37 - dataset_60 - cm 1 73 1 82 + no 1 0.63 0.0 76.3 2.5e-131 ! ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005 +SEQ10 - dataset_60 - cm 1 73 1 73 + no 1 0.62 0.0 76.3 2.8e-131 ! ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005 +SEQ23 - dataset_60 - cm 1 73 1 74 + no 1 0.61 0.0 75.9 1.2e-130 ! ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005 +SEQ20 - dataset_60 - cm 1 73 1 72 + no 1 0.56 0.0 75.8 1.7e-130 ! ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005 +SEQ30 - dataset_60 - cm 1 73 1 72 + no 1 0.61 0.0 74.9 4e-129 ! ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005 +SEQ16 - dataset_60 - cm 1 73 1 72 + no 1 0.61 0.0 74.9 4e-129 ! ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005 +SEQ21 - dataset_60 - cm 1 73 1 74 + no 1 0.61 0.0 74.8 4.8e-129 ! ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005 +SEQ18 - dataset_60 - cm 1 73 1 72 + no 1 0.58 0.0 72.9 4.3e-126 ! ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005 +SEQ35 - dataset_60 - cm 1 73 1 72 + no 1 0.65 0.0 71.9 1.2e-124 ! ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005 +SEQ45 - dataset_60 - cm 1 73 1 72 + no 1 0.60 0.0 71.6 4.5e-124 ! ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005 +SEQ7 - dataset_60 - cm 1 73 1 83 + no 1 0.63 0.0 71.2 2e-123 ! ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005 +SEQ33 - dataset_60 - cm 1 73 1 72 + no 1 0.62 0.0 69.2 2e-120 ! ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005 +SEQ19 - dataset_60 - cm 1 73 1 82 + no 1 0.59 0.0 69.0 4e-120 ! ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005 +SEQ22 - dataset_60 - cm 1 73 1 72 + no 1 0.49 0.0 48.1 5.1e-88 ! ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005 +SEQ40 - dataset_60 - cm 1 73 1 66 + no 1 0.45 0.0 44.2 4.7e-82 ! ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005 +SEQ29 - dataset_60 - cm 1 73 1 66 + no 1 0.42 0.0 31.0 8.7e-62 ! ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005 +SEQ14 - dataset_60 - cm 1 73 1 73 + no 1 0.41 0.0 29.5 2.2e-59 ! ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005 +SEQ39 - dataset_60 - cm 1 73 1 69 + no 1 0.39 0.0 21.6 2.5e-47 ! ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005 +SEQ48 - dataset_60 - cm 1 73 1 71 + no 1 0.35 0.0 12.9 5.7e-34 ! ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005 +SEQ34 - dataset_60 - cm 1 73 1 68 + no 1 0.34 0.0 12.8 9.6e-34 ! ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005 +SEQ6 - dataset_60 - cm 1 73 1 66 + no 1 0.38 0.0 12.1 1.1e-32 ! ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005 +SEQ42 - dataset_60 - cm 1 73 1 69 + no 1 0.38 0.0 9.4 1.4e-28 ! ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005 +SEQ8 - dataset_60 - cm 1 73 1 70 + no 1 0.33 0.0 9.0 6.2e-28 ! ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005 +SEQ27 - dataset_60 - cm 1 73 1 69 + no 1 0.43 0.0 8.6 3.1e-27 ! ORIGID RF00005_rep.30_AL132988.4/95773-95841_27 ORIGHEAD RF00005 +SEQ41 - dataset_60 - cm 1 73 1 68 + no 1 0.26 0.1 7.7 6e-26 ! ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005 +SEQ43 - dataset_60 - cm 1 73 1 71 + no 1 0.41 0.0 4.3 1.1e-20 ! ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005 +SEQ25 - dataset_60 - cm 1 73 1 69 + no 1 0.29 0.0 4.2 1.8e-20 ! ORIGID RF00005_rep.29_AF381996.2/4265-4333_25 ORIGHEAD RF00005 +SEQ44 - dataset_60 - cm 1 73 1 69 + no 1 0.42 0.0 1.2 6.2e-16 ! ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005 +SEQ38 - dataset_60 - cm 1 73 1 65 + no 1 0.23 0.5 -0.9 1.1e-12 ! ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005 +SEQ47 - dataset_60 - cm 1 73 1 68 + no 1 0.24 0.5 -1.5 9.1e-12 ! ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005 +SEQ49 - dataset_60 - cm 1 73 1 68 + no 1 0.35 0.0 -4.4 2.9e-07 ! 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ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 -SEQ31 - dataset_5037 - cm 1 48 26 73 + no 1 0.62 0.0 53.2 1.2e-09 ! ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -SEQ9 - dataset_5037 - cm 1 48 26 73 + no 1 0.62 0.0 52.7 1.4e-09 ! ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -SEQ28 - dataset_5037 - cm 1 48 25 71 + no 1 0.70 0.0 51.1 2.8e-09 ! ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 -SEQ11 - dataset_5037 - cm 1 48 26 82 + no 1 0.61 0.0 50.0 4.6e-09 ! ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 -SEQ15 - dataset_5037 - cm 1 48 26 73 + no 1 0.52 0.0 49.2 6.6e-09 ! ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 -SEQ19 - dataset_5037 - cm 1 48 27 82 + no 1 0.52 0.0 49.1 6.9e-09 ! ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 -SEQ50 - dataset_5037 - cm 1 48 26 73 + no 1 0.52 0.0 48.8 7.8e-09 ! ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 -SEQ17 - dataset_5037 - cm 1 48 25 71 + no 1 0.66 0.0 48.2 9.8e-09 ! ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 -SEQ23 - dataset_5037 - cm 1 48 27 74 + no 1 0.62 0.0 47.1 1.6e-08 ! ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 -SEQ12 - dataset_5037 - cm 1 48 26 82 + no 1 0.56 0.0 47.0 1.7e-08 ! ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 -SEQ13 - dataset_5037 - cm 1 48 26 82 + no 1 0.54 0.0 46.5 2e-08 ! ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 -SEQ36 - dataset_5037 - cm 1 48 26 73 + no 1 0.54 0.0 46.5 2.1e-08 ! ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 -SEQ10 - dataset_5037 - cm 1 48 26 73 + no 1 0.58 0.0 45.6 3e-08 ! ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 -SEQ18 - dataset_5037 - cm 1 48 26 72 + no 1 0.62 0.0 45.5 3.1e-08 ! ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 -SEQ46 - dataset_5037 - cm 1 48 26 72 + no 1 0.72 0.0 45.5 3.2e-08 ! ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 -SEQ21 - dataset_5037 - cm 1 48 27 74 + no 1 0.60 0.0 45.0 3.9e-08 ! ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 -SEQ24 - dataset_5037 - cm 1 48 26 73 + no 1 0.56 0.0 45.0 4e-08 ! ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 -SEQ4 - dataset_5037 - cm 1 48 26 73 + no 1 0.54 0.0 44.8 4.4e-08 ! ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 -SEQ33 - dataset_5037 - cm 1 48 26 72 + no 1 0.74 0.0 42.6 1.1e-07 ! ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 -SEQ45 - dataset_5037 - cm 1 48 25 72 + no 1 0.56 0.0 41.4 1.8e-07 ! ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005_rep.4 -SEQ30 - dataset_5037 - cm 1 48 25 72 + no 1 0.65 0.0 41.2 2e-07 ! ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 -SEQ20 - dataset_5037 - cm 1 48 25 72 + no 1 0.52 0.0 40.8 2.4e-07 ! ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 -SEQ35 - dataset_5037 - cm 1 48 26 72 + no 1 0.70 0.0 40.7 2.5e-07 ! ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 -SEQ16 - dataset_5037 - cm 1 48 25 72 + no 1 0.62 0.0 40.4 2.8e-07 ! ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 -SEQ26 - dataset_5037 - cm 1 48 26 72 + no 1 0.51 0.0 39.4 4.4e-07 ! ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005_rep.2 -SEQ5 - dataset_5037 - cm 1 48 26 72 + no 1 0.51 0.0 39.2 4.9e-07 ! ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 -SEQ37 - dataset_5037 - cm 1 48 45 82 + no 1 0.63 0.0 32.4 9e-06 ! ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 -SEQ40 - dataset_5037 - cm 1 48 21 66 + no 1 0.46 0.0 30.4 2.1e-05 ! ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005_rep.42 -SEQ7 - dataset_5037 - cm 1 48 45 83 + no 1 0.59 0.0 26.7 0.00011 ! ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 -SEQ43 - dataset_5037 - cm 1 48 27 71 + no 1 0.40 0.0 25.6 0.00017 ! ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 -SEQ14 - dataset_5037 - cm 1 48 26 73 + no 1 0.42 0.0 19.6 0.0022 ! ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 -SEQ29 - dataset_5037 - cm 1 48 22 66 + no 1 0.40 0.0 15.5 0.013 ? ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 +SEQ74 - dataset_61 - cm 1 100 1 100 + no 1 0.51 0.0 163.2 7.9e-68 ! ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618 +SEQ72 - dataset_61 - cm 1 100 1 100 + no 1 0.49 0.0 163.1 8.9e-68 ! ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618 +SEQ73 - dataset_61 - cm 1 100 1 100 + no 1 0.49 0.0 161.5 3.4e-67 ! ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618 +SEQ75 - dataset_61 - cm 1 100 1 100 + no 1 0.44 0.0 160.5 8.2e-67 ! ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618 diff -r e080ebe95476 -r b5f49453af8c test-data/3.cluster.top5.alirna.png Binary file test-data/3.cluster.top5.alirna.png has changed diff -r e080ebe95476 -r b5f49453af8c test-data/3.cluster.top5.aln.png Binary file test-data/3.cluster.top5.aln.png has changed diff -r e080ebe95476 -r b5f49453af8c test-data/3.cluster.top5.result.aln_1.R2R.sto.pdf --- a/test-data/3.cluster.top5.result.aln_1.R2R.sto.pdf Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,610 +0,0 @@ -%PDF-1.0 -5 0 obj -<< -/Type /Font -/Subtype /Type1 -/Name /FH -/BaseFont /Helvetica -/Encoding /WinAnsiEncoding ->> -endobj -4 0 obj -[/PDF /Text /ImageC] -endobj -6 0 obj -<< -/Type /Page -/Parent 3 0 R -/Resources 9 0 R -/MediaBox [0 0 163.924022 104.590539] -/Contents 7 0 R ->> -endobj -7 0 obj -<< /Length 8 0 R>> -stream -0 g -BT -/FH 12 Tf - 0 Tr -0 95.974539 Td -(result)Tj -ET -8.96 w -1 J -1 j -72 w -0 J -0 j -7.56 w -1 J -1 j -72 w -0 J -0 j -7.56 w -1 J -1 j -72 w -0 J -0 j -1.44 w -0 G -69.271934 15.538227 m -73.159934 15.538227 l -S -72 w -1.44 w -69.271934 23.098227 m -73.159934 23.098227 l -S -72 w -1.44 w -59.417306 32.482812 m -59.22744 36.366174 l -S -72 w -1.44 w -51.866326 32.113629 m -51.67646 35.99699 l -S -72 w -1.44 w -44.315345 31.744445 m -44.125479 35.627806 l -S -72 w -1.44 w -36.764365 31.375262 m -36.574499 35.258623 l -S -72 w -1.44 w -29.213385 31.006078 m -29.023519 34.889439 l -S -72 w -1.44 w -80.556366 42.643428 m -82.500365 39.27632 l -S -72 w -1.44 w -87.10352 46.423425 m -89.047518 43.056317 l -S -72 w -1.44 w -93.650674 50.203422 m -95.594672 46.836314 l -S -72 w -1.44 w -100.197828 53.983419 m -102.141826 50.616311 l -S -72 w -1.44 w -106.744981 57.763416 m -108.68898 54.396308 l -S -72 w -1.44 w -113.292135 61.543413 m -115.236134 58.176305 l -S -72 w -1.44 w -119.839289 65.32341 m -121.783287 61.956302 l -S -72 w -1.44 w -126.386443 69.103407 m -128.330441 65.736299 l -S -72 w -1.44 w -132.933597 72.883404 m -134.877595 69.516296 l -S -72 w -1.44 w -139.48075 76.663401 m -141.424749 73.296293 l -S -72 w -.5 w -.360784 G -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -S -.85098 0 0 rg -BT -/FH 7.5 Tf - 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dataset_5038 - cm 1 50 1 50 + no 1 0.34 0.0 45.6 2.6e-16 ! ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 -SEQ38 - dataset_5038 - cm 1 50 1 50 + no 1 0.24 0.0 45.2 3.9e-16 ! ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 -SEQ44 - dataset_5038 - cm 1 50 1 51 + no 1 0.41 0.0 43.7 1.7e-15 ! ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 -SEQ6 - dataset_5038 - cm 1 50 1 51 + no 1 0.37 0.0 43.6 1.7e-15 ! ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 -SEQ41 - dataset_5038 - cm 1 50 1 50 + no 1 0.28 0.0 40.6 3.3e-14 ! ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 -SEQ8 - dataset_5038 - cm 1 50 1 48 + no 1 0.29 0.0 39.1 1.4e-13 ! ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 -SEQ47 - dataset_5038 - cm 1 50 2 50 + no 1 0.27 0.0 38.0 4e-13 ! ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 -SEQ48 - dataset_5038 - cm 1 50 1 52 + no 1 0.37 0.0 37.9 4.5e-13 ! ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 -SEQ49 - dataset_5038 - cm 1 50 1 50 + no 1 0.38 0.0 35.7 3.9e-12 ! ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 -SEQ43 - dataset_5038 - cm 1 50 1 52 + no 1 0.40 0.0 35.3 5.8e-12 ! ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 -SEQ20 - dataset_5038 - cm 1 50 1 48 + no 1 0.54 0.0 29.7 1.3e-09 ! ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 -SEQ15 - dataset_5038 - cm 1 50 1 49 + no 1 0.49 0.0 29.2 2.1e-09 ! ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 -SEQ50 - dataset_5038 - cm 1 50 1 53 + no 1 0.55 0.0 29.0 2.5e-09 ! ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 -SEQ39 - dataset_5038 - cm 1 50 1 50 + no 1 0.36 0.0 28.6 3.7e-09 ! ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 -SEQ14 - dataset_5038 - cm 1 50 1 53 + no 1 0.42 0.0 27.9 7e-09 ! ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 -SEQ4 - dataset_5038 - cm 1 50 1 53 + no 1 0.58 0.0 26.6 2.6e-08 ! ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 -SEQ21 - dataset_5038 - cm 1 50 1 52 + no 1 0.56 0.0 24.0 3.2e-07 ! ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 -SEQ10 - dataset_5038 - cm 1 50 1 53 + no 1 0.58 0.0 23.2 7.4e-07 ! ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 -SEQ34 - dataset_5038 - cm 1 50 1 51 + no 1 0.35 0.0 22.2 1.9e-06 ! ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005_rep.37 -SEQ23 - dataset_5038 - cm 1 50 2 54 + no 1 0.58 0.0 19.4 2.8e-05 ! ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 -SEQ24 - dataset_5038 - cm 1 50 1 49 + no 1 0.55 0.0 18.8 5.3e-05 ! ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 -SEQ27 - dataset_5038 - cm 1 50 1 50 + no 1 0.42 0.0 18.1 0.0001 ! ORIGID RF00005_rep.30_AL132988.4/95773-95841_27 ORIGHEAD RF00005_rep.30 -SEQ16 - dataset_5038 - cm 1 50 1 52 + no 1 0.62 0.0 16.9 0.00031 ! ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 -SEQ29 - dataset_5038 - cm 1 50 1 49 + no 1 0.43 0.0 16.6 0.00044 ! ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 -SEQ33 - dataset_5038 - cm 1 50 2 53 + no 1 0.62 0.0 16.4 0.00051 ! ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 -SEQ9 - dataset_5038 - cm 1 50 1 49 + no 1 0.53 0.0 16.4 0.00054 ! ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -SEQ36 - dataset_5038 - cm 1 50 6 49 + no 1 0.52 0.0 15.0 0.002 ! ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 -SEQ31 - dataset_5038 - cm 1 50 6 49 + no 1 0.55 0.0 14.5 0.0032 ! ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -SEQ5 - dataset_5038 - cm 1 50 3 49 + no 1 0.49 0.0 13.7 0.0073 ! ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 -SEQ32 - dataset_5038 - cm 1 50 1 49 + no 1 0.53 0.0 13.5 0.009 ! 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dataset_5039 - cm 1 50 1 50 + no 1 0.52 0.0 86.4 6.3e-48 ! ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 -SEQ75 - dataset_5039 - cm 1 50 1 50 + no 1 0.44 0.0 83.9 1.3e-46 ! ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 -SEQ72 - dataset_5039 - cm 1 50 1 50 + no 1 0.50 0.0 82.8 5.2e-46 ! ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 -SEQ73 - dataset_5039 - cm 1 50 1 50 + no 1 0.48 0.0 79.7 2.1e-44 ! ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 diff -r e080ebe95476 -r b5f49453af8c test-data/5.tabular --- a/test-data/5.tabular Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,15 +0,0 @@ -SEQ84 - dataset_5040 - cm 1 52 1 50 + no 1 0.40 0.0 37.2 3.7e-21 ! ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 -SEQ78 - dataset_5040 - cm 1 52 1 50 + no 1 0.44 0.0 36.0 3.2e-20 ! ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 -SEQ87 - dataset_5040 - cm 1 52 1 49 + no 1 0.41 0.0 32.1 2.5e-17 ! ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -SEQ85 - dataset_5040 - cm 1 52 1 50 + no 1 0.38 0.0 31.3 1e-16 ! ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 -SEQ86 - dataset_5040 - cm 1 52 1 50 + no 1 0.42 0.0 31.2 1.2e-16 ! ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 -SEQ56 - dataset_5040 - cm 1 52 1 53 + no 1 0.42 0.0 30.0 9.3e-16 ! ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 -SEQ58 - dataset_5040 - cm 1 52 1 50 + no 1 0.38 0.0 28.0 3.4e-14 ! ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 -SEQ47 - dataset_5040 - cm 1 52 3 53 + no 1 0.25 0.0 27.2 1.3e-13 ! ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 -SEQ82 - dataset_5040 - cm 1 52 1 51 + no 1 0.39 0.0 25.3 3.6e-12 ! ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 -SEQ76 - dataset_5040 - cm 1 52 1 49 + no 1 0.57 0.0 24.4 1.5e-11 ! ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 -SEQ79 - dataset_5040 - cm 1 52 1 50 + no 1 0.42 0.0 22.6 3.5e-10 ! ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 -SEQ88 - dataset_5040 - cm 1 52 1 51 + no 1 0.41 0.0 19.1 1.4e-07 ! ORIGID RF00641_rep.8_AL132709.5/61554-61474_88 ORIGHEAD RF00641_rep.8 -SEQ81 - dataset_5040 - cm 1 52 1 49 + no 1 0.37 0.0 18.2 7.4e-07 ! ORIGID RF00641_rep.1_AL132709.5/86350-86274_81 ORIGHEAD RF00641_rep.1 -SEQ89 - dataset_5040 - cm 1 52 1 50 + no 1 0.46 0.0 15.8 4.8e-05 ! ORIGID RF00641_rep.9_AL132709.5/98273-98194_89 ORIGHEAD RF00641_rep.9 -SEQ83 - dataset_5040 - cm 1 52 1 50 + no 1 0.38 0.0 14.8 0.00027 ! ORIGID RF00641_rep.3_AADD01141098.1/2614-2692_83 ORIGHEAD RF00641_rep.3 diff -r e080ebe95476 -r b5f49453af8c test-data/FASTA.zip Binary file test-data/FASTA.zip has changed diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS.zip Binary file test-data/RESULTS.zip has changed diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/1.cluster.all --- a/test-data/RESULTS/1.cluster.all Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/1.cluster.all Wed May 31 14:53:30 2017 -0400 @@ -1,33 +1,34 @@ -SEQ32#26#73#+ RESULT 1 CM_SCORE 54.0 MODEL 1.2 ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 -SEQ31#26#73#+ RESULT 1 CM_SCORE 53.2 MODEL 1.2 ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -SEQ28#25#71#+ RESULT 1 CM_SCORE 51.1 MODEL 1.2 ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 -SEQ15#26#73#+ RESULT 1 CM_SCORE 49.2 MODEL 1.2 ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 -SEQ19#27#82#+ RESULT 1 CM_SCORE 49.1 MODEL 1.2 ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 -SEQ50#26#73#+ RESULT 1 CM_SCORE 48.8 MODEL 1.2 ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 -SEQ17#25#71#+ RESULT 1 CM_SCORE 48.2 MODEL 1.2 ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 -SEQ23#27#74#+ RESULT 1 CM_SCORE 47.1 MODEL 1.2 ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 -SEQ12#26#82#+ RESULT 1 CM_SCORE 47.0 MODEL 1.2 ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 -SEQ24#26#73#+ RESULT 1 CM_SCORE 45.0 MODEL 1.2 ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 -SEQ21#27#74#+ RESULT 1 CM_SCORE 45.0 MODEL 1.2 ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 -SEQ37#27#75#+ RESULT 1 CM_SCORE 43.0 MODEL 1.1 ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 -SEQ26#26#65#+ RESULT 1 CM_SCORE 42.9 MODEL 1.1 ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005_rep.2 -SEQ33#26#72#+ RESULT 1 CM_SCORE 42.6 MODEL 1.2 ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 -SEQ35#26#65#+ RESULT 1 CM_SCORE 42.0 MODEL 1.1 ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 -SEQ45#25#72#+ RESULT 1 CM_SCORE 41.4 MODEL 1.2 ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005_rep.4 -SEQ30#25#72#+ RESULT 1 CM_SCORE 41.2 MODEL 1.2 ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 -SEQ20#25#72#+ RESULT 1 CM_SCORE 40.8 MODEL 1.2 ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 -SEQ22#26#65#+ RESULT 1 CM_SCORE 31.6 MODEL 1.1 ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 -SEQ29#21#59#+ RESULT 1 CM_SCORE 24.3 MODEL 1.1 ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 -SEQ9#26#73#+ RESULT 1 CM_SCORE 52.7 CMSEARCH 1.2 ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -SEQ11#26#82#+ RESULT 1 CM_SCORE 50.0 CMSEARCH 1.2 ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 -SEQ36#26#73#+ RESULT 1 CM_SCORE 46.5 CMSEARCH 1.2 ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 -SEQ13#26#82#+ RESULT 1 CM_SCORE 46.5 CMSEARCH 1.2 ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 -SEQ10#26#73#+ RESULT 1 CM_SCORE 45.6 CMSEARCH 1.2 ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 -SEQ46#26#72#+ RESULT 1 CM_SCORE 45.5 CMSEARCH 1.2 ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 -SEQ18#26#72#+ RESULT 1 CM_SCORE 45.5 CMSEARCH 1.2 ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 -SEQ4#26#73#+ RESULT 1 CM_SCORE 44.8 CMSEARCH 1.2 ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 -SEQ5#26#65#+ RESULT 1 CM_SCORE 43.3 CMSEARCH 1.1 ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 -SEQ16#25#72#+ RESULT 1 CM_SCORE 40.4 CMSEARCH 1.2 ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 -SEQ7#27#76#+ RESULT 1 CM_SCORE 39.0 CMSEARCH 1.1 ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 -SEQ14#26#66#+ RESULT 1 CM_SCORE 33.9 CMSEARCH 1.1 ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 -SEQ40#21#66#+ RESULT 1 CM_SCORE 30.4 CMSEARCH 1.2 ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005_rep.42 +SEQ31#1#73#+ RESULT 1 CM_SCORE 88.9 MODEL 1.1 ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005 +SEQ9#1#73#+ RESULT 1 CM_SCORE 87.8 MODEL 1.1 ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005 +SEQ32#1#73#+ RESULT 1 CM_SCORE 87.3 MODEL 1.1 ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005 +SEQ13#1#82#+ RESULT 1 CM_SCORE 86.3 MODEL 1.1 ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005 +SEQ28#1#71#+ RESULT 1 CM_SCORE 80.7 MODEL 1.1 ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005 +SEQ46#1#72#+ RESULT 1 CM_SCORE 78.4 MODEL 1.1 ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005 +SEQ17#1#71#+ RESULT 1 CM_SCORE 77.7 MODEL 1.1 ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005 +SEQ37#1#82#+ RESULT 1 CM_SCORE 76.3 MODEL 1.1 ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005 +SEQ10#1#73#+ RESULT 1 CM_SCORE 76.3 MODEL 1.1 ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005 +SEQ23#1#74#+ RESULT 1 CM_SCORE 75.9 MODEL 1.1 ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005 +SEQ30#1#72#+ RESULT 1 CM_SCORE 74.9 MODEL 1.1 ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005 +SEQ16#1#72#+ RESULT 1 CM_SCORE 74.9 MODEL 1.1 ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005 +SEQ18#1#72#+ RESULT 1 CM_SCORE 72.9 MODEL 1.1 ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005 +SEQ35#1#72#+ RESULT 1 CM_SCORE 71.9 MODEL 1.1 ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005 +SEQ7#1#83#+ RESULT 1 CM_SCORE 71.2 MODEL 1.1 ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005 +SEQ33#1#72#+ RESULT 1 CM_SCORE 69.2 MODEL 1.1 ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005 +SEQ29#1#66#+ RESULT 1 CM_SCORE 31.0 MODEL 1.1 ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005 +SEQ11#1#82#+ RESULT 1 CM_SCORE 88.3 CMSEARCH 1.1 ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005 +SEQ36#1#73#+ RESULT 1 CM_SCORE 83.0 CMSEARCH 1.1 ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005 +SEQ12#1#82#+ RESULT 1 CM_SCORE 82.7 CMSEARCH 1.1 ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005 +SEQ26#1#72#+ RESULT 1 CM_SCORE 82.0 CMSEARCH 1.1 ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005 +SEQ5#1#72#+ RESULT 1 CM_SCORE 81.7 CMSEARCH 1.1 ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005 +SEQ50#1#73#+ RESULT 1 CM_SCORE 80.8 CMSEARCH 1.1 ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005 +SEQ15#1#73#+ RESULT 1 CM_SCORE 80.6 CMSEARCH 1.1 ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005 +SEQ24#1#73#+ RESULT 1 CM_SCORE 80.3 CMSEARCH 1.1 ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005 +SEQ4#1#73#+ RESULT 1 CM_SCORE 79.2 CMSEARCH 1.1 ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005 +SEQ20#1#72#+ RESULT 1 CM_SCORE 75.8 CMSEARCH 1.1 ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005 +SEQ21#1#74#+ RESULT 1 CM_SCORE 74.8 CMSEARCH 1.1 ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005 +SEQ45#1#72#+ RESULT 1 CM_SCORE 71.6 CMSEARCH 1.1 ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005 +SEQ19#1#82#+ RESULT 1 CM_SCORE 69.0 CMSEARCH 1.1 ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005 +SEQ22#1#72#+ RESULT 1 CM_SCORE 48.1 CMSEARCH 1.1 ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005 +SEQ40#1#66#+ RESULT 1 CM_SCORE 44.2 CMSEARCH 1.1 ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005 +SEQ14#1#73#+ RESULT 1 CM_SCORE 29.5 CMSEARCH 1.1 ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005 +SEQ39#1#69#+ RESULT 1 CM_SCORE 21.6 CMSEARCH 1.1 ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/1.cluster.all.fa --- a/test-data/RESULTS/1.cluster.all.fa Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/1.cluster.all.fa Wed May 31 14:53:30 2017 -0400 @@ -1,66 +1,94 @@ ->SEQ36_26_73_+ RESULT 1 SCORE 46.5 EVALUE 2.1e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005_rep.39 -GUUCGCCUAACACGCGAAAGGUCCCUGGAUCAAAACCAGGCGGAAACA ->SEQ11_26_82_+ RESULT 1 SCORE 50.0 EVALUE 4.6e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 -GUUGGACUUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCUCGCUGCG ->SEQ35_26_65_+ RESULT 1 SCORE 42.0 EVALUE 4.1e-08 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005_rep.38 -UCGGCGCUUUCACCGCCGCGCCCCGGGUUCGAUUCCCGGC ->SEQ23_27_74_+ RESULT 1 SCORE 47.1 EVALUE 1.6e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005_rep.27 -GUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCA ->SEQ45_25_72_+ RESULT 1 SCORE 41.4 EVALUE 1.8e-07 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005_rep.4 -GCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUA ->SEQ17_25_71_+ RESULT 1 SCORE 48.2 EVALUE 9.8e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005_rep.21 -UCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA ->SEQ31_26_73_+ RESULT 1 SCORE 53.2 EVALUE 1.2e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -GUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA ->SEQ5_26_65_+ RESULT 1 SCORE 43.3 EVALUE 2.2e-08 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005_rep.10 -UCUGGACUUUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGU ->SEQ33_26_72_+ RESULT 1 SCORE 42.6 EVALUE 1.1e-07 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005_rep.36 -CCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG ->SEQ7_27_76_+ RESULT 1 SCORE 39.0 EVALUE 1.8e-07 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005_rep.12 -GCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACU ->SEQ26_26_65_+ RESULT 1 SCORE 42.9 EVALUE 2.6e-08 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005_rep.2 -UCUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGU ->SEQ22_26_65_+ RESULT 1 SCORE 31.6 EVALUE 5.9e-06 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005_rep.26 -GGAGAAUUUUGGAUUCUCAGGGAUGGGUUCGAUUCUCAUA ->SEQ28_25_71_+ RESULT 1 SCORE 51.1 EVALUE 2.8e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 -UCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA ->SEQ30_25_72_+ RESULT 1 SCORE 41.2 EVALUE 2e-07 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005_rep.33 -UCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC ->SEQ9_26_73_+ RESULT 1 SCORE 52.7 EVALUE 1.4e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -GUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA ->SEQ37_27_75_+ RESULT 1 SCORE 43.0 EVALUE 2.6e-08 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005_rep.3 -GCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACC ->SEQ15_26_73_+ RESULT 1 SCORE 49.2 EVALUE 6.6e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005_rep.1 -GUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA ->SEQ32_26_73_+ RESULT 1 SCORE 54.0 EVALUE 8.3e-10 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 -AUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA ->SEQ12_26_82_+ RESULT 1 SCORE 47.0 EVALUE 1.7e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005_rep.17 -GAUGGACUUGAAAUCCAUUGGGGUUUCCCCGCGCAGGUUCGAAUCCUGUCGGCUACG ->SEQ46_26_72_+ RESULT 1 SCORE 45.5 EVALUE 3.2e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005_rep.5 -UCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA ->SEQ24_26_73_+ RESULT 1 SCORE 45.0 EVALUE 4e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005_rep.28 -GGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGA ->SEQ18_26_72_+ RESULT 1 SCORE 45.5 EVALUE 3.1e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005_rep.22 -AGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA ->SEQ10_26_73_+ RESULT 1 SCORE 45.6 EVALUE 3e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005_rep.15 -AUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG ->SEQ21_27_74_+ RESULT 1 SCORE 45.0 EVALUE 3.9e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005_rep.25 -GUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG ->SEQ19_27_82_+ RESULT 1 SCORE 49.1 EVALUE 6.9e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005_rep.23 -AGCAGACUCUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCA ->SEQ14_26_66_+ RESULT 1 SCORE 33.9 EVALUE 2e-06 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005_rep.19 -GCUUAGCUGUUAACUAAGUGUUUGUGGGUUUAAGUCCCAUU ->SEQ13_26_82_+ RESULT 1 SCORE 46.5 EVALUE 2e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005_rep.18 -GAUGGACUAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCCGACUACG ->SEQ20_25_72_+ RESULT 1 SCORE 40.8 EVALUE 2.4e-07 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005_rep.24 -AUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU ->SEQ40_21_66_+ RESULT 1 SCORE 30.4 EVALUE 2.1e-05 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005_rep.42 -AUUGAAUUGCAAAUUCGAAGAAGCAGCUUCAAACCUGCCGGGGCUU ->SEQ4_26_73_+ RESULT 1 SCORE 44.8 EVALUE 4.4e-08 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005_rep.0 -ACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAUUCUCGCUGGGGCUU ->SEQ50_26_73_+ RESULT 1 SCORE 48.8 EVALUE 7.8e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005_rep.9 -AUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG ->SEQ16_25_72_+ RESULT 1 SCORE 40.4 EVALUE 2.8e-07 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005_rep.20 -GCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA ->SEQ29_21_59_+ RESULT 1 SCORE 24.3 EVALUE 0.0002 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005_rep.32 -CAUUGGACUGUAAAUCUAAAGACAGGGGUUAGGCCUCUU +>SEQ31_1_73_+ RESULT 1 SCORE 88.9 EVALUE 1.2e-150 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005 +GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA +>SEQ24_1_73_+ RESULT 1 SCORE 80.3 EVALUE 1.5e-137 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.28_X04779.1/1-73_24 ORIGHEAD RF00005 +CCUUCGAUAGCUCAGCUGGUAGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGA +>SEQ9_1_73_+ RESULT 1 SCORE 87.8 EVALUE 4.6e-149 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005 +GCUUCUGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA +>SEQ5_1_72_+ RESULT 1 SCORE 81.7 EVALUE 1.3e-139 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.10_X58792.1/174-245_5 ORIGHEAD RF00005 +GGUCCCAUGGUGUAAUGGUUAGCACUCUGGACUUUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUGGGACCU +>SEQ45_1_72_+ RESULT 1 SCORE 71.6 EVALUE 4.5e-124 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.4_Z98744.2/66305-66234_45 ORIGHEAD RF00005 +AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUA +>SEQ22_1_72_+ RESULT 1 SCORE 48.1 EVALUE 5.1e-88 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.26_AF346999.1/4402-4331_22 ORIGHEAD RF00005 +UAGGAUGGGGUGUGAUAGGUGGCACGGAGAAUUUUGGAUUCUCAGGGAUGGGUUCGAUUCUCAUAGUCCUAG +>SEQ41_1_68_+ RESULT 1 SCORE 7.7 EVALUE 6e-26 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005 +ACUCUUUUAGUAUAAAUAGUACCGUUAACUUCCAAUUAACUAGUUUUGACAACAUUCAAAAAAGAGUA +>SEQ16_1_72_+ RESULT 1 SCORE 74.9 EVALUE 4e-129 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.20_AL671879.2/100356-100285_16 ORIGHEAD RF00005 +GGGGAUGUAGCUCAGUGGUAGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCA +>SEQ37_1_82_+ RESULT 1 SCORE 76.3 EVALUE 2.5e-131 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.3_Z54587.1/126-45_37 ORIGHEAD RF00005 +GGUAGCGUGGCCGAGCGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCUCUUCGGAGGCGUGGGUUCGAAUCCCACCGCUGCCA +>SEQ15_1_73_+ RESULT 1 SCORE 80.6 EVALUE 5.9e-138 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.1_AC005329.1/7043-6971_15 ORIGHEAD RF00005 +GCCGAAAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCA +>SEQ44_1_69_+ RESULT 1 SCORE 1.2 EVALUE 6.2e-16 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005 +CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAACUUAACUUGACCGCUCUGA +>SEQ36_1_73_+ RESULT 1 SCORE 83.0 EVALUE 1.1e-141 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.39_AL031229.2/40502-40430_36 ORIGHEAD RF00005 +GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCUGGAUCAAAACCAGGCGGAAACA +>SEQ11_1_82_+ RESULT 1 SCORE 88.3 EVALUE 8e-150 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005 +GCAGCGAUGGCCGAGUGGUUAAGGCGUUGGACUUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCUCGCUGCG +>SEQ43_1_71_+ RESULT 1 SCORE 4.3 EVALUE 1.1e-20 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005 +GUUUAUGUAGCUUACCUCCUCAAAGCAAUACACUGAAAAUGUUUAGACGGGCUCACAUCACCCCAUAAACA +>SEQ49_1_68_+ RESULT 1 SCORE -4.4 EVALUE 2.9e-07 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005 +AGAAAUUUAGGUUAAAUACAGACCAAGAGCCUUCAAAGCCCUCAGUAAGUUGCAAUACUUAAUUUCUG +>SEQ40_1_66_+ RESULT 1 SCORE 44.2 EVALUE 4.7e-82 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.42_AF347015.1/5827-5762_40 ORIGHEAD RF00005 +AGCUCCGAGGUGAUUUUCAUAUUGAAUUGCAAAUUCGAAGAAGCAGCUUCAAACCUGCCGGGGCUU +>SEQ8_1_70_+ RESULT 1 SCORE 9.0 EVALUE 6.2e-28 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005 +CACUGUAAAGCUAACUUAGCAUUAACCUUUUAAGUUAAAGAUUAAGAGAACCAACACCUCUUUACAGUGA +>SEQ23_1_74_+ RESULT 1 SCORE 75.9 EVALUE 1.2e-130 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.27_AL352978.6/119697-119770_23 ORIGHEAD RF00005 +GGCCGGUUAGCUCAGUUGGUUAGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCA +>SEQ27_1_69_+ RESULT 1 SCORE 8.6 EVALUE 3.1e-27 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.30_AL132988.4/95773-95841_27 ORIGHEAD RF00005 +AAGGGCUUAGCUUAAUUAAAGUGGCUGAUUUGCGUUCAGUUGAUGCAGAGUGGGGUUUUGCAGUCCUUA +>SEQ12_1_82_+ RESULT 1 SCORE 82.7 EVALUE 3.1e-141 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.17_AL021918.1/54817-54736_12 ORIGHEAD RF00005 +GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUUGAAAUCCAUUGGGGUUUCCCCGCGCAGGUUCGAAUCCUGUCGGCUACG +>SEQ48_1_71_+ RESULT 1 SCORE 12.9 EVALUE 5.7e-34 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005 +ACUUUUAAAGGAUAACAGCUAUCCAUUGGUCUUAGGCCCCAAAAAUUUUGGUGCAACUCCAAAUAAAAGUA +>SEQ4_1_73_+ RESULT 1 SCORE 79.2 EVALUE 7.3e-136 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.0_M15347.1/1040-968_4 ORIGHEAD RF00005 +GGCUCCAUAGCUCAGGGGUUAGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAUUCUCGCUGGGGCUU +>SEQ32_1_73_+ RESULT 1 SCORE 87.3 EVALUE 2.6e-148 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005 +GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA +>SEQ46_1_72_+ RESULT 1 SCORE 78.4 EVALUE 1.3e-134 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.5_AL590385.23/26129-26058_46 ORIGHEAD RF00005 +UCCCUGGUGGUCUAGUGGUUAGGAUUCGGCGCUCUCACCGCCGCGGCCCGGGUUCGAUUCCCGGUCAGGGAA +>SEQ19_1_82_+ RESULT 1 SCORE 69.0 EVALUE 4e-120 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.23_M16479.1/42-123_19 ORIGHEAD RF00005 +GGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUCUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCA +>SEQ28_1_71_+ RESULT 1 SCORE 80.7 EVALUE 4.6e-138 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005 +GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA +>SEQ20_1_72_+ RESULT 1 SCORE 75.8 EVALUE 1.7e-130 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.24_AC004941.2/32735-32806_20 ORIGHEAD RF00005 +GGGGGUAUAGCUCAGGGGUAGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCU +>SEQ13_1_82_+ RESULT 1 SCORE 86.3 EVALUE 8.9e-147 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005 +GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCCGACUACG +>SEQ7_1_83_+ RESULT 1 SCORE 71.2 EVALUE 2e-123 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.12_AC108081.2/59868-59786_7 ORIGHEAD RF00005 +GUCAGGAUGGCCGAGCGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCCCCUGGAGGCGUGGGUUCGAAUCCCACUUCUGACA +>SEQ50_1_73_+ RESULT 1 SCORE 80.8 EVALUE 3.1e-138 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.9_AP000442.6/2022-1950_50 ORIGHEAD RF00005 +GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCG +>SEQ30_1_72_+ RESULT 1 SCORE 74.9 EVALUE 4e-129 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.33_AC018638.5/4694-4623_30 ORIGHEAD RF00005 +GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCC +>SEQ17_1_71_+ RESULT 1 SCORE 77.7 EVALUE 1.6e-133 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.21_AL355149.13/15278-15208_17 ORIGHEAD RF00005 +GCAUUGGUGGUUCAGUGGUAGAAUUCUCGCCUCCCACGCGGGAGACCCGGGUUCAAUUCCCGGCCAAUGCA +>SEQ38_1_65_+ RESULT 1 SCORE -0.9 EVALUE 1.1e-12 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005 +UGGUAUAUAGUUUAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAUAAUCAUAUUUACCAA +>SEQ14_1_73_+ RESULT 1 SCORE 29.5 EVALUE 2.2e-59 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.19_AF134583.1/1816-1744_14 ORIGHEAD RF00005 +UAGAUUGAAGCCAGUUGAUUAGGGUGCUUAGCUGUUAACUAAGUGUUUGUGGGUUUAAGUCCCAUUGGUCUAG +>SEQ39_1_69_+ RESULT 1 SCORE 21.6 EVALUE 2.5e-47 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005 +GUUCUUGUAGUUGAAAUACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGUUGUAGUCCGUGCGAGAAUA +>SEQ35_1_72_+ RESULT 1 SCORE 71.9 EVALUE 1.2e-124 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.38_J00309.1/356-427_35 ORIGHEAD RF00005 +UCCCUGGUGGUCUAGUGGCUAGGAUUCGGCGCUUUCACCGCCGCGCCCCGGGUUCGAUUCCCGGCCAGGAAU +>SEQ47_1_68_+ RESULT 1 SCORE -1.5 EVALUE 9.1e-12 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005 +AAGGUAUUAGAAAAACCAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGCUAAAUCCUAUAUAUCUUA +>SEQ6_1_66_+ RESULT 1 SCORE 12.1 EVALUE 1.1e-32 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005 +GUCCUUGUAGUAUAAACUAAUACACCAGUCUUGUAAACCGGAGAUGAAAACCUUUUUCCAAGGACA +>SEQ26_1_72_+ RESULT 1 SCORE 82.0 EVALUE 4.9e-140 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.2_AL662865.4/12206-12135_26 ORIGHEAD RF00005 +GGUUCCAUGGUGUAAUGGUUAGCACUCUGGACUCUGAAUCCAGCGAUCCGAGUUCAAAUCUCGGUGGAACCU +>SEQ42_1_69_+ RESULT 1 SCORE 9.4 EVALUE 1.4e-28 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005 +GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUCACGACCCCUUAUUUACC +>SEQ33_1_72_+ RESULT 1 SCORE 69.2 EVALUE 2e-120 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.36_AC007298.17/145366-145295_33 ORIGHEAD RF00005 +UCCUCGUUAGUAUAGUGGUGAGUAUCCCCGCCUGUCACGCGGGAGACCGGGGUUCGAUUCCCCGACGGGGAG +>SEQ29_1_66_+ RESULT 1 SCORE 31.0 EVALUE 8.7e-62 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.32_AF347015.1/5892-5827_29 ORIGHEAD RF00005 +GGUAAAAUGGCUGAGUGAAGCAUUGGACUGUAAAUCUAAAGACAGGGGUUAGGCCUCUUUUUACCA +>SEQ34_1_68_+ RESULT 1 SCORE 12.8 EVALUE 9.6e-34 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005 +CAGAGAAUAGUUUAAAUUAGAAUCUUAGCUUUGGGUGCUAAUGGUGGAGUUAAAGACUUUUUCUCUGA +>SEQ10_1_73_+ RESULT 1 SCORE 76.3 EVALUE 2.8e-131 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.15_AC008443.10/42590-42518_10 ORIGHEAD RF00005 +GCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCG +>SEQ25_1_69_+ RESULT 1 SCORE 4.2 EVALUE 1.8e-20 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.29_AF381996.2/4265-4333_25 ORIGHEAD RF00005 +AGAAAUAUGUCUGAUAAAAGAGUUACUUUGAUAGAGUAAAUAAUAGGAGCUUAAACCCCCUUAUUUCUA +>SEQ21_1_74_+ RESULT 1 SCORE 74.8 EVALUE 4.8e-129 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.25_AC006449.19/196857-196784_21 ORIGHEAD RF00005 +GUCUCUGUGGCGCAAUCGGUUAGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACG +>SEQ18_1_72_+ RESULT 1 SCORE 72.9 EVALUE 4.3e-126 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.22_AL590385.23/26487-26416_18 ORIGHEAD RF00005 +GCGUUGGUGGUAUAGUGGUGAGCAUAGCUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCAACGCA diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/1.cluster.part --- a/test-data/RESULTS/1.cluster.part Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/1.cluster.part Wed May 31 14:53:30 2017 -0400 @@ -1,33 +1,47 @@ -SEQ36#26#73#+ 46.5 2.1e-08 1.1 1.2 1 -SEQ11#26#82#+ 50.0 4.6e-09 1.1 1.2 1 -SEQ35#26#65#+ 42.0 4.1e-08 1.1 1.1 1 -SEQ23#27#74#+ 47.1 1.6e-08 1.1 1.2 1 -SEQ45#25#72#+ 41.4 1.8e-07 1.1 1.2 1 -SEQ17#25#71#+ 48.2 9.8e-09 1.1 1.2 1 -SEQ31#26#73#+ 53.2 1.2e-09 1.1 1.2 1 -SEQ5#26#65#+ 43.3 2.2e-08 1.1 1.1 1 -SEQ33#26#72#+ 42.6 1.1e-07 1.1 1.2 1 -SEQ7#27#76#+ 39.0 1.8e-07 1.1 1.1 1 -SEQ26#26#65#+ 42.9 2.6e-08 1.1 1.1 1 -SEQ22#26#65#+ 31.6 5.9e-06 1.1 1.1 1 -SEQ28#25#71#+ 51.1 2.8e-09 1.1 1.2 1 -SEQ30#25#72#+ 41.2 2e-07 1.1 1.2 1 -SEQ9#26#73#+ 52.7 1.4e-09 1.1 1.2 1 -SEQ37#27#75#+ 43.0 2.6e-08 1.1 1.1 1 -SEQ15#26#73#+ 49.2 6.6e-09 1.1 1.2 1 -SEQ32#26#73#+ 54.0 8.3e-10 1.1 1.2 1 -SEQ12#26#82#+ 47.0 1.7e-08 1.1 1.2 1 -SEQ46#26#72#+ 45.5 3.2e-08 1.1 1.2 1 -SEQ24#26#73#+ 45.0 4e-08 1.1 1.2 1 -SEQ18#26#72#+ 45.5 3.1e-08 1.1 1.2 1 -SEQ10#26#73#+ 45.6 3e-08 1.1 1.2 1 -SEQ21#27#74#+ 45.0 3.9e-08 1.1 1.2 1 -SEQ19#27#82#+ 49.1 6.9e-09 1.1 1.2 1 -SEQ14#26#66#+ 33.9 2e-06 1.1 1.1 1 -SEQ13#26#82#+ 46.5 2e-08 1.1 1.2 1 -SEQ20#25#72#+ 40.8 2.4e-07 1.1 1.2 1 -SEQ40#21#66#+ 30.4 2.1e-05 1.1 1.2 1 -SEQ4#26#73#+ 44.8 4.4e-08 1.1 1.2 1 -SEQ50#26#73#+ 48.8 7.8e-09 1.1 1.2 1 -SEQ16#25#72#+ 40.4 2.8e-07 1.1 1.2 1 -SEQ29#21#59#+ 24.3 0.0002 1.1 1.1 1 +SEQ31#1#73#+ 88.9 1.2e-150 1.1 1.1 1 +SEQ24#1#73#+ 80.3 1.5e-137 1.1 1.1 1 +SEQ9#1#73#+ 87.8 4.6e-149 1.1 1.1 1 +SEQ5#1#72#+ 81.7 1.3e-139 1.1 1.1 1 +SEQ45#1#72#+ 71.6 4.5e-124 1.1 1.1 1 +SEQ22#1#72#+ 48.1 5.1e-88 1.1 1.1 1 +SEQ41#1#68#+ 7.7 6e-26 1.1 1.1 1 +SEQ16#1#72#+ 74.9 4e-129 1.1 1.1 1 +SEQ37#1#82#+ 76.3 2.5e-131 1.1 1.1 1 +SEQ15#1#73#+ 80.6 5.9e-138 1.1 1.1 1 +SEQ44#1#69#+ 1.2 6.2e-16 1.1 1.1 1 +SEQ36#1#73#+ 83.0 1.1e-141 1.1 1.1 1 +SEQ11#1#82#+ 88.3 8e-150 1.1 1.1 1 +SEQ43#1#71#+ 4.3 1.1e-20 1.1 1.1 1 +SEQ49#1#68#+ -4.4 2.9e-07 1.1 1.1 1 +SEQ40#1#66#+ 44.2 4.7e-82 1.1 1.1 1 +SEQ8#1#70#+ 9.0 6.2e-28 1.1 1.1 1 +SEQ23#1#74#+ 75.9 1.2e-130 1.1 1.1 1 +SEQ27#1#69#+ 8.6 3.1e-27 1.1 1.1 1 +SEQ12#1#82#+ 82.7 3.1e-141 1.1 1.1 1 +SEQ48#1#71#+ 12.9 5.7e-34 1.1 1.1 1 +SEQ4#1#73#+ 79.2 7.3e-136 1.1 1.1 1 +SEQ32#1#73#+ 87.3 2.6e-148 1.1 1.1 1 +SEQ46#1#72#+ 78.4 1.3e-134 1.1 1.1 1 +SEQ19#1#82#+ 69.0 4e-120 1.1 1.1 1 +SEQ28#1#71#+ 80.7 4.6e-138 1.1 1.1 1 +SEQ20#1#72#+ 75.8 1.7e-130 1.1 1.1 1 +SEQ13#1#82#+ 86.3 8.9e-147 1.1 1.1 1 +SEQ7#1#83#+ 71.2 2e-123 1.1 1.1 1 +SEQ50#1#73#+ 80.8 3.1e-138 1.1 1.1 1 +SEQ30#1#72#+ 74.9 4e-129 1.1 1.1 1 +SEQ17#1#71#+ 77.7 1.6e-133 1.1 1.1 1 +SEQ38#1#65#+ -0.9 1.1e-12 1.1 1.1 1 +SEQ14#1#73#+ 29.5 2.2e-59 1.1 1.1 1 +SEQ39#1#69#+ 21.6 2.5e-47 1.1 1.1 1 +SEQ35#1#72#+ 71.9 1.2e-124 1.1 1.1 1 +SEQ47#1#68#+ -1.5 9.1e-12 1.1 1.1 1 +SEQ6#1#66#+ 12.1 1.1e-32 1.1 1.1 1 +SEQ26#1#72#+ 82.0 4.9e-140 1.1 1.1 1 +SEQ42#1#69#+ 9.4 1.4e-28 1.1 1.1 1 +SEQ33#1#72#+ 69.2 2e-120 1.1 1.1 1 +SEQ29#1#66#+ 31.0 8.7e-62 1.1 1.1 1 +SEQ34#1#68#+ 12.8 9.6e-34 1.1 1.1 1 +SEQ10#1#73#+ 76.3 2.8e-131 1.1 1.1 1 +SEQ25#1#69#+ 4.2 1.8e-20 1.1 1.1 1 +SEQ21#1#74#+ 74.8 4.8e-129 1.1 1.1 1 +SEQ18#1#72#+ 72.9 4.3e-126 1.1 1.1 1 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/1.cluster.stats --- a/test-data/RESULTS/1.cluster.stats Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/1.cluster.stats Wed May 31 14:53:30 2017 -0400 @@ -1,1 +1,1 @@ -CLUSTER 1 SEQS 33 IDS_UNIQUE 33 MODELS 2 +CLUSTER 1 SEQS 47 IDS_UNIQUE 44 MODELS 1 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/1.cluster.top5.fa --- a/test-data/RESULTS/1.cluster.top5.fa Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/1.cluster.top5.fa Wed May 31 14:53:30 2017 -0400 @@ -1,10 +1,10 @@ ->SEQ32_26_73_+ RESULT 1 SCORE 54.0 EVALUE 8.3e-10 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005_rep.35 -AUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA ->SEQ31_26_73_+ RESULT 1 SCORE 53.2 EVALUE 1.2e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005_rep.34 -GUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA ->SEQ9_26_73_+ RESULT 1 SCORE 52.7 EVALUE 1.4e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005_rep.14 -GUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA ->SEQ28_25_71_+ RESULT 1 SCORE 51.1 EVALUE 2.8e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.31_AC092686.3/29631-29561_28 ORIGHEAD RF00005_rep.31 -UCUCGCCUGCCACGCGGGAGGCCCGGGUUCGAUUCCCGGCCAAUGCA ->SEQ11_26_82_+ RESULT 1 SCORE 50.0 EVALUE 4.6e-09 CLUSTER 1.2 LOC MISS ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005_rep.16 -GUUGGACUUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCUCGCUGCG +>SEQ31_1_73_+ RESULT 1 SCORE 88.9 EVALUE 1.2e-150 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.34_AC008443.10/43006-42934_31 ORIGHEAD RF00005 +GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACA +>SEQ11_1_82_+ RESULT 1 SCORE 88.3 EVALUE 8e-150 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.16_AL133551.13/12355-12436_11 ORIGHEAD RF00005 +GCAGCGAUGGCCGAGUGGUUAAGGCGUUGGACUUGAAAUCCAAUGGGGUCUCCCCGCGCAGGUUCGAACCCUGCUCGCUGCG +>SEQ9_1_73_+ RESULT 1 SCORE 87.8 EVALUE 4.6e-149 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.14_AL021808.2/65570-65498_9 ORIGHEAD RF00005 +GCUUCUGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCA +>SEQ32_1_73_+ RESULT 1 SCORE 87.3 EVALUE 2.6e-148 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.35_AC005783.1/27398-27326_32 ORIGHEAD RF00005 +GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAUCCCGGGCGGAAACA +>SEQ13_1_82_+ RESULT 1 SCORE 86.3 EVALUE 8.9e-147 CLUSTER 1.1 LOC MISS ORIGID RF00005_rep.18_AL021918.1/81116-81197_13 ORIGHEAD RF00005 +GUAGUCGUGGCCGAGUGGUUAAGGCGAUGGACUAGAAAUCCAUUGGGGUUUCCCCACGCAGGUUCGAAUCCUGCCGACUACG diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/2.cluster.all --- a/test-data/RESULTS/2.cluster.all Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/2.cluster.all Wed May 31 14:53:30 2017 -0400 @@ -1,12 +1,4 @@ -SEQ44#1#51#+ RESULT 2 CM_SCORE 43.7 MODEL 1.3 ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 -SEQ8#1#48#+ RESULT 2 CM_SCORE 39.1 MODEL 1.3 ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 -SEQ47#2#50#+ RESULT 2 CM_SCORE 38.0 MODEL 1.3 ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 -SEQ48#1#52#+ RESULT 2 CM_SCORE 37.9 MODEL 1.3 ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 -SEQ43#1#52#+ RESULT 2 CM_SCORE 35.3 MODEL 1.3 ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 -SEQ39#1#50#+ RESULT 2 CM_SCORE 28.6 MODEL 1.3 ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 -SEQ34#1#51#+ RESULT 2 CM_SCORE 22.2 MODEL 1.3 ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005_rep.37 -SEQ42#1#50#+ RESULT 2 CM_SCORE 45.6 CMSEARCH 1.3 ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 -SEQ38#1#50#+ RESULT 2 CM_SCORE 45.2 CMSEARCH 1.3 ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 -SEQ6#1#51#+ RESULT 2 CM_SCORE 43.6 CMSEARCH 1.3 ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 -SEQ41#1#50#+ RESULT 2 CM_SCORE 40.6 CMSEARCH 1.3 ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 -SEQ49#1#50#+ RESULT 2 CM_SCORE 35.7 CMSEARCH 1.3 ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 +SEQ74#1#100#+ RESULT 2 CM_SCORE 163.2 MODEL 1.2 ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618 +SEQ72#1#100#+ RESULT 2 CM_SCORE 163.1 MODEL 1.2 ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618 +SEQ73#1#100#+ RESULT 2 CM_SCORE 161.5 MODEL 1.2 ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618 +SEQ75#1#100#+ RESULT 2 CM_SCORE 160.5 MODEL 1.2 ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/2.cluster.all.fa --- a/test-data/RESULTS/2.cluster.all.fa Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/2.cluster.all.fa Wed May 31 14:53:30 2017 -0400 @@ -1,24 +1,8 @@ ->SEQ34_1_51_+ RESULT 2 SCORE 22.2 EVALUE 1.9e-06 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.37_AF347001.1/16015-15948_34 ORIGHEAD RF00005_rep.37 -CAGAGAAUAGUUUAAAUUAGAAUCUUAGCUUUGGGUGCUAAUGGUGGAGUU ->SEQ41_1_50_+ RESULT 2 SCORE 40.6 EVALUE 3.3e-14 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 -ACUCUUUUAGUAUAAAUAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC ->SEQ47_2_50_+ RESULT 2 SCORE 38.0 EVALUE 4e-13 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.6_X93334.1/6942-7009_47 ORIGHEAD RF00005_rep.6 -AGGUAUUAGAAAAACCAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC ->SEQ42_1_50_+ RESULT 2 SCORE 45.6 EVALUE 2.6e-16 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 -GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC ->SEQ39_1_50_+ RESULT 2 SCORE 28.6 EVALUE 3.7e-09 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.41_AC093311.2/140036-139968_39 ORIGHEAD RF00005_rep.41 -GUUCUUGUAGUUGAAAUACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGU ->SEQ43_1_52_+ RESULT 2 SCORE 35.3 EVALUE 5.8e-12 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.45_AF382005.1/581-651_43 ORIGHEAD RF00005_rep.45 -GUUUAUGUAGCUUACCUCCUCAAAGCAAUACACUGAAAAUGUUUAGACGGGC ->SEQ49_1_50_+ RESULT 2 SCORE 35.7 EVALUE 3.9e-12 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.8_AF134583.1/1599-1666_49 ORIGHEAD RF00005_rep.8 -AGAAAUUUAGGUUAAAUACAGACCAAGAGCCUUCAAAGCCCUCAGUAAGU ->SEQ44_1_51_+ RESULT 2 SCORE 43.7 EVALUE 1.7e-15 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 -CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAAC ->SEQ8_1_48_+ RESULT 2 SCORE 39.1 EVALUE 1.4e-13 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.13_AC067849.6/4771-4840_8 ORIGHEAD RF00005_rep.13 -CACUGUAAAGCUAACUUAGCAUUAACCUUUUAAGUUAAAGAUUAAGAG ->SEQ6_1_51_+ RESULT 2 SCORE 43.6 EVALUE 1.7e-15 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 -GUCCUUGUAGUAUAAACUAAUACACCAGUCUUGUAAACCGGAGAUGAAAAC ->SEQ38_1_50_+ RESULT 2 SCORE 45.2 EVALUE 3.9e-16 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 -UGGUAUAUAGUUUAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAU ->SEQ48_1_52_+ RESULT 2 SCORE 37.9 EVALUE 4.5e-13 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.7_AF347005.1/12268-12338_48 ORIGHEAD RF00005_rep.7 -ACUUUUAAAGGAUAACAGCUAUCCAUUGGUCUUAGGCCCCAAAAAUUUUGGU +>SEQ75_1_100_+ RESULT 2 SCORE 160.5 EVALUE 8.2e-67 CLUSTER 1.2 LOC MISS ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGGGCAGUAUUGCUAACGCCUAUACAAUGCACCUGCAUCAACUAGAACUUUGC +>SEQ74_1_100_+ RESULT 2 SCORE 163.2 EVALUE 7.9e-68 CLUSTER 1.2 LOC MISS ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGGGCAGUACUGCUAACGCCUGAACAACACACCCGCAUCAACUAGAGCUUUUG +>SEQ72_1_100_+ RESULT 2 SCORE 163.1 EVALUE 8.9e-68 CLUSTER 1.2 LOC MISS ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGGGCAGUACUGCUAACUCCUGCACAACACACCGAAAUCAACUAGAGCUUUGC +>SEQ73_1_100_+ RESULT 2 SCORE 161.5 EVALUE 3.4e-67 CLUSTER 1.2 LOC MISS ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGGGCAGUACUGCUAACGUCUACACAACACACCCACCUCAACUAGAGCUUUGC diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/2.cluster.part --- a/test-data/RESULTS/2.cluster.part Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/2.cluster.part Wed May 31 14:53:30 2017 -0400 @@ -1,12 +1,4 @@ -SEQ34#1#51#+ 22.2 1.9e-06 1.3 1.3 2 -SEQ41#1#50#+ 40.6 3.3e-14 1.3 1.3 2 -SEQ47#2#50#+ 38.0 4e-13 1.3 1.3 2 -SEQ42#1#50#+ 45.6 2.6e-16 1.3 1.3 2 -SEQ39#1#50#+ 28.6 3.7e-09 1.3 1.3 2 -SEQ43#1#52#+ 35.3 5.8e-12 1.3 1.3 2 -SEQ49#1#50#+ 35.7 3.9e-12 1.3 1.3 2 -SEQ44#1#51#+ 43.7 1.7e-15 1.3 1.3 2 -SEQ8#1#48#+ 39.1 1.4e-13 1.3 1.3 2 -SEQ6#1#51#+ 43.6 1.7e-15 1.3 1.3 2 -SEQ38#1#50#+ 45.2 3.9e-16 1.3 1.3 2 -SEQ48#1#52#+ 37.9 4.5e-13 1.3 1.3 2 +SEQ75#1#100#+ 160.5 8.2e-67 1.2 1.2 2 +SEQ74#1#100#+ 163.2 7.9e-68 1.2 1.2 2 +SEQ72#1#100#+ 163.1 8.9e-68 1.2 1.2 2 +SEQ73#1#100#+ 161.5 3.4e-67 1.2 1.2 2 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/2.cluster.stats --- a/test-data/RESULTS/2.cluster.stats Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/2.cluster.stats Wed May 31 14:53:30 2017 -0400 @@ -1,1 +1,1 @@ -CLUSTER 2 SEQS 12 IDS_UNIQUE 12 MODELS 1 +CLUSTER 2 SEQS 4 IDS_UNIQUE 4 MODELS 1 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/2.cluster.top5.fa --- a/test-data/RESULTS/2.cluster.top5.fa Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/2.cluster.top5.fa Wed May 31 14:53:30 2017 -0400 @@ -1,10 +1,8 @@ ->SEQ42_1_50_+ RESULT 2 SCORE 45.6 EVALUE 2.6e-16 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.44_AC008670.6/83597-83665_42 ORIGHEAD RF00005_rep.44 -GUAAAUAUAGUUUAACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC ->SEQ38_1_50_+ RESULT 2 SCORE 45.2 EVALUE 3.9e-16 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.40_AF382013.1/10403-10467_38 ORIGHEAD RF00005_rep.40 -UGGUAUAUAGUUUAAACAAAACGAAUGAUUUCGACUCAUUAAAUUAUGAU ->SEQ44_1_51_+ RESULT 2 SCORE 43.7 EVALUE 1.7e-15 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.46_AF347015.1/1604-1672_44 ORIGHEAD RF00005_rep.46 -CAGAGUGUAGCUUAACACAAAGCACCCAACUUACACUUAGGAGAUUUCAAC ->SEQ6_1_51_+ RESULT 2 SCORE 43.6 EVALUE 1.7e-15 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.11_AF346992.1/15890-15955_6 ORIGHEAD RF00005_rep.11 -GUCCUUGUAGUAUAAACUAAUACACCAGUCUUGUAAACCGGAGAUGAAAAC ->SEQ41_1_50_+ RESULT 2 SCORE 40.6 EVALUE 3.3e-14 CLUSTER 1.3 LOC MISS ORIGID RF00005_rep.43_L23320.1/77-10_41 ORIGHEAD RF00005_rep.43 -ACUCUUUUAGUAUAAAUAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC +>SEQ74_1_100_+ RESULT 2 SCORE 163.2 EVALUE 7.9e-68 CLUSTER 1.2 LOC MISS ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGGGCAGUACUGCUAACGCCUGAACAACACACCCGCAUCAACUAGAGCUUUUG +>SEQ72_1_100_+ RESULT 2 SCORE 163.1 EVALUE 8.9e-68 CLUSTER 1.2 LOC MISS ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGGGCAGUACUGCUAACUCCUGCACAACACACCGAAAUCAACUAGAGCUUUGC +>SEQ73_1_100_+ RESULT 2 SCORE 161.5 EVALUE 3.4e-67 CLUSTER 1.2 LOC MISS ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGGGCAGUACUGCUAACGUCUACACAACACACCCACCUCAACUAGAGCUUUGC +>SEQ75_1_100_+ RESULT 2 SCORE 160.5 EVALUE 8.2e-67 CLUSTER 1.2 LOC MISS ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618 +ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGGGCAGUAUUGCUAACGCCUAUACAAUGCACCUGCAUCAACUAGAACUUUGC diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/3.cluster.all --- a/test-data/RESULTS/3.cluster.all Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ -SEQ74#1#50#+ RESULT 3 CM_SCORE 86.4 MODEL 1.4 ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 -SEQ72#1#50#+ RESULT 3 CM_SCORE 82.8 MODEL 1.4 ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 -SEQ73#1#50#+ RESULT 3 CM_SCORE 79.7 MODEL 1.4 ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 -SEQ75#1#50#+ RESULT 3 CM_SCORE 83.9 CMSEARCH 1.4 ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/3.cluster.all.fa --- a/test-data/RESULTS/3.cluster.all.fa Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,8 +0,0 @@ ->SEQ75_1_50_+ RESULT 3 SCORE 83.9 EVALUE 1.3e-46 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGG ->SEQ73_1_50_+ RESULT 3 SCORE 79.7 EVALUE 2.1e-44 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGG ->SEQ74_1_50_+ RESULT 3 SCORE 86.4 EVALUE 6.3e-48 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 -ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGG ->SEQ72_1_50_+ RESULT 3 SCORE 82.8 EVALUE 5.2e-46 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGG diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/3.cluster.part --- a/test-data/RESULTS/3.cluster.part Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,4 +0,0 @@ -SEQ75#1#50#+ 83.9 1.3e-46 1.4 1.4 3 -SEQ73#1#50#+ 79.7 2.1e-44 1.4 1.4 3 -SEQ74#1#50#+ 86.4 6.3e-48 1.4 1.4 3 -SEQ72#1#50#+ 82.8 5.2e-46 1.4 1.4 3 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/3.cluster.stats --- a/test-data/RESULTS/3.cluster.stats Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -CLUSTER 3 SEQS 4 IDS_UNIQUE 4 MODELS 1 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/3.cluster.top5.fa --- a/test-data/RESULTS/3.cluster.top5.fa Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,8 +0,0 @@ ->SEQ74_1_50_+ RESULT 3 SCORE 86.4 EVALUE 6.3e-48 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.2_U62822.1/2-128_74 ORIGHEAD RF00618_rep.2 -ACCAUCCUUUUCUUGGGGUUGCGCUACUGUCCAAUGAGCGCAUAGUGAGG ->SEQ75_1_50_+ RESULT 3 SCORE 83.9 EVALUE 1.3e-46 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.3_AL389925.10/20736-20611_75 ORIGHEAD RF00618_rep.3 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCUAAUGAGUGCAUAAUGAGG ->SEQ72_1_50_+ RESULT 3 SCORE 82.8 EVALUE 5.2e-46 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.0_AL135914.25/92223-92098_72 ORIGHEAD RF00618_rep.0 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAUGGGUACCUAGUGAGG ->SEQ73_1_50_+ RESULT 3 SCORE 79.7 EVALUE 2.1e-44 CLUSTER 1.4 LOC MISS ORIGID RF00618_rep.1_AL161445.10/77816-77941_73 ORIGHEAD RF00618_rep.1 -ACCAUCCUUUUCUUGGGGUUGCACUACUGUCCAAAGAGCAUGUAGUGAGG diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/4.cluster.all --- a/test-data/RESULTS/4.cluster.all Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10 +0,0 @@ -SEQ84#1#50#+ RESULT 4 CM_SCORE 37.2 MODEL 1.5 ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 -SEQ85#1#50#+ RESULT 4 CM_SCORE 31.3 MODEL 1.5 ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 -SEQ86#1#50#+ RESULT 4 CM_SCORE 31.2 MODEL 1.5 ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 -SEQ82#1#51#+ RESULT 4 CM_SCORE 25.3 MODEL 1.5 ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 -SEQ76#1#49#+ RESULT 4 CM_SCORE 24.4 MODEL 1.5 ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 -SEQ78#1#50#+ RESULT 4 CM_SCORE 36.0 CMSEARCH 1.5 ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 -SEQ87#1#49#+ RESULT 4 CM_SCORE 32.1 CMSEARCH 1.5 ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -SEQ56#1#53#+ RESULT 4 CM_SCORE 30.0 CMSEARCH 1.5 ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 -SEQ58#1#50#+ RESULT 4 CM_SCORE 28.0 CMSEARCH 1.5 ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 -SEQ79#1#50#+ RESULT 4 CM_SCORE 22.6 CMSEARCH 1.5 ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/4.cluster.all.fa --- a/test-data/RESULTS/4.cluster.all.fa Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,20 +0,0 @@ ->SEQ87_1_49_+ RESULT 4 SCORE 32.1 EVALUE 2.5e-17 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -GGUACCUGAAAUAGGUUGCCUGUGAGGUGUUCACUUUCUAUAUGAUGAA ->SEQ84_1_50_+ RESULT 4 SCORE 37.2 EVALUE 3.7e-21 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 -GGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAG ->SEQ79_1_50_+ RESULT 4 SCORE 22.6 EVALUE 3.5e-10 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.12_AL132709.5/56006-55928_79 ORIGHEAD RF00641_rep.12 -GGUACUUGAAGGGAGAUCGACCGUGUUAUAUUCGCUUUAUUGACUUCGAA ->SEQ86_1_50_+ RESULT 4 SCORE 31.2 EVALUE 1.2e-16 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 -GGUACUUAAGGGGGAGGUGGGCUUUGAAUAAUAAGUUUAUUGACGUGGAA ->SEQ85_1_50_+ RESULT 4 SCORE 31.3 EVALUE 1e-16 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 -GGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAU ->SEQ82_1_51_+ RESULT 4 SCORE 25.3 EVALUE 3.6e-12 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.2_AC208187.2/29806-29886_82 ORIGHEAD RF00641_rep.2 -GAUACUCGAAGGAGAGGUUGUCCGUGUUGUCUUCUCUUUAUUUAUGAUGAA ->SEQ58_1_50_+ RESULT 4 SCORE 28.0 EVALUE 3.4e-14 CLUSTER 1.5 LOC MISS ORIGID RF00019_rep.3_AADD01087475.1/2469-2552_58 ORIGHEAD RF00019_rep.3 -AGUUGGUCCGAGUGUUGUGGGUUAUUGUUAAGUUGAUUUAACAUUGUCUC ->SEQ78_1_50_+ RESULT 4 SCORE 36.0 EVALUE 3.2e-20 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 -GGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUGUGACGU ->SEQ76_1_49_+ RESULT 4 SCORE 24.4 EVALUE 1.5e-11 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.0_AL132709.5/95865-95787_76 ORIGHEAD RF00641_rep.0 -GGUACUUGGAGAGAGGUGGUCCGUGGCGCGUUCGCUUUAUUUAUGGCGC ->SEQ56_1_53_+ RESULT 4 SCORE 30.0 EVALUE 9.3e-16 CLUSTER 1.5 LOC MISS ORIGID RF00019_rep.1_L32608.1/283-377_56 ORIGHEAD RF00019_rep.1 -GGCUGGUCCGAUGGUAGUGGGUUAUCAGAACUUAUUAACAUUAGUGUCACUAA diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/4.cluster.part --- a/test-data/RESULTS/4.cluster.part Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10 +0,0 @@ -SEQ87#1#49#+ 32.1 2.5e-17 1.5 1.5 4 -SEQ84#1#50#+ 37.2 3.7e-21 1.5 1.5 4 -SEQ79#1#50#+ 22.6 3.5e-10 1.5 1.5 4 -SEQ86#1#50#+ 31.2 1.2e-16 1.5 1.5 4 -SEQ85#1#50#+ 31.3 1e-16 1.5 1.5 4 -SEQ82#1#51#+ 25.3 3.6e-12 1.5 1.5 4 -SEQ58#1#50#+ 28.0 3.4e-14 1.5 1.5 4 -SEQ78#1#50#+ 36.0 3.2e-20 1.5 1.5 4 -SEQ76#1#49#+ 24.4 1.5e-11 1.5 1.5 4 -SEQ56#1#53#+ 30.0 9.3e-16 1.5 1.5 4 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/4.cluster.stats --- a/test-data/RESULTS/4.cluster.stats Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -CLUSTER 4 SEQS 10 IDS_UNIQUE 10 MODELS 1 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/4.cluster.top5.fa --- a/test-data/RESULTS/4.cluster.top5.fa Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,10 +0,0 @@ ->SEQ84_1_50_+ RESULT 4 SCORE 37.2 EVALUE 3.7e-21 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.4_ABBA01048514.1/248685-248607_84 ORIGHEAD RF00641_rep.4 -GGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAG ->SEQ78_1_50_+ RESULT 4 SCORE 36.0 EVALUE 3.2e-20 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.11_AC208187.2/25743-25822_78 ORIGHEAD RF00641_rep.11 -GGUAUUUGAAGAUGCGGUUGACCAUGGUGUGUACGCUUUAUUUGUGACGU ->SEQ87_1_49_+ RESULT 4 SCORE 32.1 EVALUE 2.5e-17 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.7_AL132709.5/54880-54803_87 ORIGHEAD RF00641_rep.7 -GGUACCUGAAAUAGGUUGCCUGUGAGGUGUUCACUUUCUAUAUGAUGAA ->SEQ85_1_50_+ RESULT 4 SCORE 31.3 EVALUE 1e-16 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.5_AL132709.5/73699-73621_85 ORIGHEAD RF00641_rep.5 -GGUGCUUAAAGAAUGGCUGUCCGUAGUAUGGUCUCUAUAUUUAUGAUGAU ->SEQ86_1_50_+ RESULT 4 SCORE 31.2 EVALUE 1.2e-16 CLUSTER 1.5 LOC MISS ORIGID RF00641_rep.6_AADB02234051.1/94-172_86 ORIGHEAD RF00641_rep.6 -GGUACUUAAGGGGGAGGUGGGCUUUGAAUAAUAAGUUUAUUGACGUGGAA diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/cluster.final.stats --- a/test-data/RESULTS/cluster.final.stats Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/cluster.final.stats Wed May 31 14:53:30 2017 -0400 @@ -1,4 +1,2 @@ -CLUSTER 1 SEQS 33 IDS_UNIQUE 33 MODELS 2 -CLUSTER 2 SEQS 12 IDS_UNIQUE 12 MODELS 1 -CLUSTER 3 SEQS 4 IDS_UNIQUE 4 MODELS 1 -CLUSTER 4 SEQS 10 IDS_UNIQUE 10 MODELS 1 +CLUSTER 1 SEQS 34 IDS_UNIQUE 34 MODELS 1 +CLUSTER 2 SEQS 4 IDS_UNIQUE 4 MODELS 1 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/evaluation.txt --- a/test-data/RESULTS/evaluation.txt Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -completeness_score : 0.617828515133 -homogeneity_score : 0.967645117225 -adjusted_rand_score : 0.590908231597 -adjusted_mutual_info_score : 0.460249315397 -v_measure_score : 0.754145302388 \ No newline at end of file diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/fullTab.tabular --- a/test-data/RESULTS/fullTab.tabular Sat Mar 25 16:50:38 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,92 +0,0 @@ -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 1 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00005 2 -RF00618 3 -RF00618 3 -RF00618 3 -RF00618 3 -RF00641 4 -RF00641 4 -RF00641 4 -RF00641 4 -RF00641 4 -RF00641 4 -RF00641 4 -RF00019 4 -RF00019 4 -RF00641 4 -RF00001 5 -RF00001 6 -RF00001 7 -RF00005 8 -RF00005 9 -RF00006 10 -RF00006 11 -RF00006 12 -RF00006 13 -RF00019 14 -RF00019 15 -RF00027 16 -RF00027 17 -RF00027 18 -RF00031 19 -RF00031 20 -RF00031 21 -RF00031 22 -RF00031 23 -RF00031 24 -RF00031 25 -RF00049 26 -RF00049 27 -RF00049 28 -RF00641 29 -RF00641 30 -RF00641 31 -RF00641 32 -RF00641 33 -RF00641 34 -RF00693 35 -RF00693 36 -RF00693 37 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/partitions/final_overlap.map --- a/test-data/RESULTS/partitions/final_overlap.map Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/partitions/final_overlap.map Wed May 31 14:53:30 2017 -0400 @@ -1,4 +1,2 @@ -1.1 1.1 1.2 -1.3 1.3 -1.4 1.4 -1.5 1.5 +1.1 1.1 +1.2 1.2 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/partitions/final_overlap.matrix --- a/test-data/RESULTS/partitions/final_overlap.matrix Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/partitions/final_overlap.matrix Wed May 31 14:53:30 2017 -0400 @@ -1,7 +1,4 @@ -# MODEL 1.1 1.2 1.3 1.4 1.5 -MODEL CLASS 0 0 0 0 0 -1.1 0 0 0.9(29/34) 0.3(9/34) 0 0 -1.2 0 0.9(29/31) 0 0.2(5/31) 0 0 -1.3 0 0.5(9/19) 0.3(5/19) 0 0 0.1(1/19) -1.4 0 0 0 0 0 0 -1.5 0 0 0 0.1(1/11) 0 0 +# MODEL 1.1 1.2 +MODEL CLASS 0 0 +1.1 0 0 0 +1.2 0 0 0 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/partitions/final_partition.hard.best --- a/test-data/RESULTS/partitions/final_partition.hard.best Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/partitions/final_partition.hard.best Wed May 31 14:53:30 2017 -0400 @@ -1,59 +1,38 @@ -SEQ5#26#65#+ 43.3 2.2e-08 1.1 1.1 1 -SEQ37#27#75#+ 43.0 2.6e-08 1.1 1.1 1 -SEQ26#26#65#+ 42.9 2.6e-08 1.1 1.1 1 -SEQ35#26#65#+ 42.0 4.1e-08 1.1 1.1 1 -SEQ7#27#76#+ 39.0 1.8e-07 1.1 1.1 1 -SEQ14#26#66#+ 33.9 2e-06 1.1 1.1 1 -SEQ22#26#65#+ 31.6 5.9e-06 1.1 1.1 1 -SEQ29#21#59#+ 24.3 0.0002 1.1 1.1 1 -SEQ32#26#73#+ 54.0 8.3e-10 1.2 1.2 2 -SEQ31#26#73#+ 53.2 1.2e-09 1.2 1.2 2 -SEQ9#26#73#+ 52.7 1.4e-09 1.2 1.2 2 -SEQ28#25#71#+ 51.1 2.8e-09 1.2 1.2 2 -SEQ11#26#82#+ 50.0 4.6e-09 1.2 1.2 2 -SEQ15#26#73#+ 49.2 6.6e-09 1.2 1.2 2 -SEQ19#27#82#+ 49.1 6.9e-09 1.2 1.2 2 -SEQ50#26#73#+ 48.8 7.8e-09 1.2 1.2 2 -SEQ17#25#71#+ 48.2 9.8e-09 1.2 1.2 2 -SEQ23#27#74#+ 47.1 1.6e-08 1.2 1.2 2 -SEQ12#26#82#+ 47.0 1.7e-08 1.2 1.2 2 -SEQ13#26#82#+ 46.5 2e-08 1.2 1.2 2 -SEQ36#26#73#+ 46.5 2.1e-08 1.2 1.2 2 -SEQ10#26#73#+ 45.6 3e-08 1.2 1.2 2 -SEQ18#26#72#+ 45.5 3.1e-08 1.2 1.2 2 -SEQ46#26#72#+ 45.5 3.2e-08 1.2 1.2 2 -SEQ21#27#74#+ 45.0 3.9e-08 1.2 1.2 2 -SEQ24#26#73#+ 45.0 4e-08 1.2 1.2 2 -SEQ4#26#73#+ 44.8 4.4e-08 1.2 1.2 2 -SEQ33#26#72#+ 42.6 1.1e-07 1.2 1.2 2 -SEQ45#25#72#+ 41.4 1.8e-07 1.2 1.2 2 -SEQ30#25#72#+ 41.2 2e-07 1.2 1.2 2 -SEQ20#25#72#+ 40.8 2.4e-07 1.2 1.2 2 -SEQ16#25#72#+ 40.4 2.8e-07 1.2 1.2 2 -SEQ40#21#66#+ 30.4 2.1e-05 1.2 1.2 2 -SEQ42#1#50#+ 45.6 2.6e-16 1.3 1.3 3 -SEQ38#1#50#+ 45.2 3.9e-16 1.3 1.3 3 -SEQ44#1#51#+ 43.7 1.7e-15 1.3 1.3 3 -SEQ6#1#51#+ 43.6 1.7e-15 1.3 1.3 3 -SEQ41#1#50#+ 40.6 3.3e-14 1.3 1.3 3 -SEQ8#1#48#+ 39.1 1.4e-13 1.3 1.3 3 -SEQ47#2#50#+ 38.0 4e-13 1.3 1.3 3 -SEQ48#1#52#+ 37.9 4.5e-13 1.3 1.3 3 -SEQ49#1#50#+ 35.7 3.9e-12 1.3 1.3 3 -SEQ43#1#52#+ 35.3 5.8e-12 1.3 1.3 3 -SEQ39#1#50#+ 28.6 3.7e-09 1.3 1.3 3 -SEQ34#1#51#+ 22.2 1.9e-06 1.3 1.3 3 -SEQ74#1#50#+ 86.4 6.3e-48 1.4 1.4 4 -SEQ75#1#50#+ 83.9 1.3e-46 1.4 1.4 4 -SEQ72#1#50#+ 82.8 5.2e-46 1.4 1.4 4 -SEQ73#1#50#+ 79.7 2.1e-44 1.4 1.4 4 -SEQ84#1#50#+ 37.2 3.7e-21 1.5 1.5 5 -SEQ78#1#50#+ 36.0 3.2e-20 1.5 1.5 5 -SEQ87#1#49#+ 32.1 2.5e-17 1.5 1.5 5 -SEQ85#1#50#+ 31.3 1e-16 1.5 1.5 5 -SEQ86#1#50#+ 31.2 1.2e-16 1.5 1.5 5 -SEQ56#1#53#+ 30.0 9.3e-16 1.5 1.5 5 -SEQ58#1#50#+ 28.0 3.4e-14 1.5 1.5 5 -SEQ82#1#51#+ 25.3 3.6e-12 1.5 1.5 5 -SEQ76#1#49#+ 24.4 1.5e-11 1.5 1.5 5 -SEQ79#1#50#+ 22.6 3.5e-10 1.5 1.5 5 +SEQ31#1#73#+ 88.9 1.2e-150 1.1 1.1 1 +SEQ11#1#82#+ 88.3 8e-150 1.1 1.1 1 +SEQ9#1#73#+ 87.8 4.6e-149 1.1 1.1 1 +SEQ32#1#73#+ 87.3 2.6e-148 1.1 1.1 1 +SEQ13#1#82#+ 86.3 8.9e-147 1.1 1.1 1 +SEQ36#1#73#+ 83.0 1.1e-141 1.1 1.1 1 +SEQ12#1#82#+ 82.7 3.1e-141 1.1 1.1 1 +SEQ26#1#72#+ 82.0 4.9e-140 1.1 1.1 1 +SEQ5#1#72#+ 81.7 1.3e-139 1.1 1.1 1 +SEQ50#1#73#+ 80.8 3.1e-138 1.1 1.1 1 +SEQ28#1#71#+ 80.7 4.6e-138 1.1 1.1 1 +SEQ15#1#73#+ 80.6 5.9e-138 1.1 1.1 1 +SEQ24#1#73#+ 80.3 1.5e-137 1.1 1.1 1 +SEQ4#1#73#+ 79.2 7.3e-136 1.1 1.1 1 +SEQ46#1#72#+ 78.4 1.3e-134 1.1 1.1 1 +SEQ17#1#71#+ 77.7 1.6e-133 1.1 1.1 1 +SEQ10#1#73#+ 76.3 2.8e-131 1.1 1.1 1 +SEQ37#1#82#+ 76.3 2.5e-131 1.1 1.1 1 +SEQ23#1#74#+ 75.9 1.2e-130 1.1 1.1 1 +SEQ20#1#72#+ 75.8 1.7e-130 1.1 1.1 1 +SEQ16#1#72#+ 74.9 4e-129 1.1 1.1 1 +SEQ30#1#72#+ 74.9 4e-129 1.1 1.1 1 +SEQ21#1#74#+ 74.8 4.8e-129 1.1 1.1 1 +SEQ18#1#72#+ 72.9 4.3e-126 1.1 1.1 1 +SEQ35#1#72#+ 71.9 1.2e-124 1.1 1.1 1 +SEQ45#1#72#+ 71.6 4.5e-124 1.1 1.1 1 +SEQ7#1#83#+ 71.2 2e-123 1.1 1.1 1 +SEQ33#1#72#+ 69.2 2e-120 1.1 1.1 1 +SEQ19#1#82#+ 69.0 4e-120 1.1 1.1 1 +SEQ22#1#72#+ 48.1 5.1e-88 1.1 1.1 1 +SEQ40#1#66#+ 44.2 4.7e-82 1.1 1.1 1 +SEQ29#1#66#+ 31.0 8.7e-62 1.1 1.1 1 +SEQ14#1#73#+ 29.5 2.2e-59 1.1 1.1 1 +SEQ39#1#69#+ 21.6 2.5e-47 1.1 1.1 1 +SEQ74#1#100#+ 163.2 7.9e-68 1.2 1.2 2 +SEQ72#1#100#+ 163.1 8.9e-68 1.2 1.2 2 +SEQ73#1#100#+ 161.5 3.4e-67 1.2 1.2 2 +SEQ75#1#100#+ 160.5 8.2e-67 1.2 1.2 2 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/partitions/final_partition.hard.merged --- a/test-data/RESULTS/partitions/final_partition.hard.merged Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/partitions/final_partition.hard.merged Wed May 31 14:53:30 2017 -0400 @@ -1,59 +1,38 @@ -SEQ32#26#73#+ 54.0 8.3e-10 1.1 1.2 1 -SEQ31#26#73#+ 53.2 1.2e-09 1.1 1.2 1 -SEQ9#26#73#+ 52.7 1.4e-09 1.1 1.2 1 -SEQ28#25#71#+ 51.1 2.8e-09 1.1 1.2 1 -SEQ11#26#82#+ 50.0 4.6e-09 1.1 1.2 1 -SEQ15#26#73#+ 49.2 6.6e-09 1.1 1.2 1 -SEQ19#27#82#+ 49.1 6.9e-09 1.1 1.2 1 -SEQ50#26#73#+ 48.8 7.8e-09 1.1 1.2 1 -SEQ17#25#71#+ 48.2 9.8e-09 1.1 1.2 1 -SEQ23#27#74#+ 47.1 1.6e-08 1.1 1.2 1 -SEQ12#26#82#+ 47.0 1.7e-08 1.1 1.2 1 -SEQ13#26#82#+ 46.5 2e-08 1.1 1.2 1 -SEQ36#26#73#+ 46.5 2.1e-08 1.1 1.2 1 -SEQ10#26#73#+ 45.6 3e-08 1.1 1.2 1 -SEQ18#26#72#+ 45.5 3.1e-08 1.1 1.2 1 -SEQ46#26#72#+ 45.5 3.2e-08 1.1 1.2 1 -SEQ21#27#74#+ 45.0 3.9e-08 1.1 1.2 1 -SEQ24#26#73#+ 45.0 4e-08 1.1 1.2 1 -SEQ4#26#73#+ 44.8 4.4e-08 1.1 1.2 1 -SEQ5#26#65#+ 43.3 2.2e-08 1.1 1.1 1 -SEQ37#27#75#+ 43.0 2.6e-08 1.1 1.1 1 -SEQ26#26#65#+ 42.9 2.6e-08 1.1 1.1 1 -SEQ33#26#72#+ 42.6 1.1e-07 1.1 1.2 1 -SEQ35#26#65#+ 42.0 4.1e-08 1.1 1.1 1 -SEQ45#25#72#+ 41.4 1.8e-07 1.1 1.2 1 -SEQ30#25#72#+ 41.2 2e-07 1.1 1.2 1 -SEQ20#25#72#+ 40.8 2.4e-07 1.1 1.2 1 -SEQ16#25#72#+ 40.4 2.8e-07 1.1 1.2 1 -SEQ7#27#76#+ 39.0 1.8e-07 1.1 1.1 1 -SEQ14#26#66#+ 33.9 2e-06 1.1 1.1 1 -SEQ22#26#65#+ 31.6 5.9e-06 1.1 1.1 1 -SEQ40#21#66#+ 30.4 2.1e-05 1.1 1.2 1 -SEQ29#21#59#+ 24.3 0.0002 1.1 1.1 1 -SEQ42#1#50#+ 45.6 2.6e-16 1.3 1.3 2 -SEQ38#1#50#+ 45.2 3.9e-16 1.3 1.3 2 -SEQ44#1#51#+ 43.7 1.7e-15 1.3 1.3 2 -SEQ6#1#51#+ 43.6 1.7e-15 1.3 1.3 2 -SEQ41#1#50#+ 40.6 3.3e-14 1.3 1.3 2 -SEQ8#1#48#+ 39.1 1.4e-13 1.3 1.3 2 -SEQ47#2#50#+ 38.0 4e-13 1.3 1.3 2 -SEQ48#1#52#+ 37.9 4.5e-13 1.3 1.3 2 -SEQ49#1#50#+ 35.7 3.9e-12 1.3 1.3 2 -SEQ43#1#52#+ 35.3 5.8e-12 1.3 1.3 2 -SEQ39#1#50#+ 28.6 3.7e-09 1.3 1.3 2 -SEQ34#1#51#+ 22.2 1.9e-06 1.3 1.3 2 -SEQ74#1#50#+ 86.4 6.3e-48 1.4 1.4 3 -SEQ75#1#50#+ 83.9 1.3e-46 1.4 1.4 3 -SEQ72#1#50#+ 82.8 5.2e-46 1.4 1.4 3 -SEQ73#1#50#+ 79.7 2.1e-44 1.4 1.4 3 -SEQ84#1#50#+ 37.2 3.7e-21 1.5 1.5 4 -SEQ78#1#50#+ 36.0 3.2e-20 1.5 1.5 4 -SEQ87#1#49#+ 32.1 2.5e-17 1.5 1.5 4 -SEQ85#1#50#+ 31.3 1e-16 1.5 1.5 4 -SEQ86#1#50#+ 31.2 1.2e-16 1.5 1.5 4 -SEQ56#1#53#+ 30.0 9.3e-16 1.5 1.5 4 -SEQ58#1#50#+ 28.0 3.4e-14 1.5 1.5 4 -SEQ82#1#51#+ 25.3 3.6e-12 1.5 1.5 4 -SEQ76#1#49#+ 24.4 1.5e-11 1.5 1.5 4 -SEQ79#1#50#+ 22.6 3.5e-10 1.5 1.5 4 +SEQ31#1#73#+ 88.9 1.2e-150 1.1 1.1 1 +SEQ11#1#82#+ 88.3 8e-150 1.1 1.1 1 +SEQ9#1#73#+ 87.8 4.6e-149 1.1 1.1 1 +SEQ32#1#73#+ 87.3 2.6e-148 1.1 1.1 1 +SEQ13#1#82#+ 86.3 8.9e-147 1.1 1.1 1 +SEQ36#1#73#+ 83.0 1.1e-141 1.1 1.1 1 +SEQ12#1#82#+ 82.7 3.1e-141 1.1 1.1 1 +SEQ26#1#72#+ 82.0 4.9e-140 1.1 1.1 1 +SEQ5#1#72#+ 81.7 1.3e-139 1.1 1.1 1 +SEQ50#1#73#+ 80.8 3.1e-138 1.1 1.1 1 +SEQ28#1#71#+ 80.7 4.6e-138 1.1 1.1 1 +SEQ15#1#73#+ 80.6 5.9e-138 1.1 1.1 1 +SEQ24#1#73#+ 80.3 1.5e-137 1.1 1.1 1 +SEQ4#1#73#+ 79.2 7.3e-136 1.1 1.1 1 +SEQ46#1#72#+ 78.4 1.3e-134 1.1 1.1 1 +SEQ17#1#71#+ 77.7 1.6e-133 1.1 1.1 1 +SEQ10#1#73#+ 76.3 2.8e-131 1.1 1.1 1 +SEQ37#1#82#+ 76.3 2.5e-131 1.1 1.1 1 +SEQ23#1#74#+ 75.9 1.2e-130 1.1 1.1 1 +SEQ20#1#72#+ 75.8 1.7e-130 1.1 1.1 1 +SEQ16#1#72#+ 74.9 4e-129 1.1 1.1 1 +SEQ30#1#72#+ 74.9 4e-129 1.1 1.1 1 +SEQ21#1#74#+ 74.8 4.8e-129 1.1 1.1 1 +SEQ18#1#72#+ 72.9 4.3e-126 1.1 1.1 1 +SEQ35#1#72#+ 71.9 1.2e-124 1.1 1.1 1 +SEQ45#1#72#+ 71.6 4.5e-124 1.1 1.1 1 +SEQ7#1#83#+ 71.2 2e-123 1.1 1.1 1 +SEQ33#1#72#+ 69.2 2e-120 1.1 1.1 1 +SEQ19#1#82#+ 69.0 4e-120 1.1 1.1 1 +SEQ22#1#72#+ 48.1 5.1e-88 1.1 1.1 1 +SEQ40#1#66#+ 44.2 4.7e-82 1.1 1.1 1 +SEQ29#1#66#+ 31.0 8.7e-62 1.1 1.1 1 +SEQ14#1#73#+ 29.5 2.2e-59 1.1 1.1 1 +SEQ39#1#69#+ 21.6 2.5e-47 1.1 1.1 1 +SEQ74#1#100#+ 163.2 7.9e-68 1.2 1.2 2 +SEQ72#1#100#+ 163.1 8.9e-68 1.2 1.2 2 +SEQ73#1#100#+ 161.5 3.4e-67 1.2 1.2 2 +SEQ75#1#100#+ 160.5 8.2e-67 1.2 1.2 2 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/partitions/final_partition.soft --- a/test-data/RESULTS/partitions/final_partition.soft Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/partitions/final_partition.soft Wed May 31 14:53:30 2017 -0400 @@ -1,99 +1,38 @@ -SEQ24#26#66#+ 44.3 1.4e-08 1.1 1.1 1 -SEQ15#26#66#+ 44.1 1.5e-08 1.1 1.1 1 -SEQ46#26#65#+ 43.5 2.1e-08 1.1 1.1 1 -SEQ5#26#65#+ 43.3 2.2e-08 1.1 1.1 1 -SEQ37#27#75#+ 43.0 2.6e-08 1.1 1.1 1 -SEQ26#26#65#+ 42.9 2.6e-08 1.1 1.1 1 -SEQ35#26#65#+ 42.0 4.1e-08 1.1 1.1 1 -SEQ50#25#66#+ 40.8 7.3e-08 1.1 1.1 1 -SEQ11#26#75#+ 40.5 8.4e-08 1.1 1.1 1 -SEQ13#26#75#+ 40.0 1.1e-07 1.1 1.1 1 -SEQ21#27#67#+ 40.0 1.1e-07 1.1 1.1 1 -SEQ12#26#75#+ 39.8 1.2e-07 1.1 1.1 1 -SEQ28#25#64#+ 39.7 1.2e-07 1.1 1.1 1 -SEQ18#25#65#+ 39.4 1.4e-07 1.1 1.1 1 -SEQ33#26#65#+ 39.4 1.5e-07 1.1 1.1 1 -SEQ4#25#66#+ 39.3 1.5e-07 1.1 1.1 1 -SEQ31#26#66#+ 39.2 1.6e-07 1.1 1.1 1 -SEQ9#26#66#+ 39.2 1.6e-07 1.1 1.1 1 -SEQ7#27#76#+ 39.0 1.8e-07 1.1 1.1 1 -SEQ17#25#64#+ 38.7 2e-07 1.1 1.1 1 -SEQ23#27#67#+ 38.6 2.1e-07 1.1 1.1 1 -SEQ20#24#65#+ 38.2 2.6e-07 1.1 1.1 1 -SEQ10#25#66#+ 37.5 3.6e-07 1.1 1.1 1 -SEQ30#25#65#+ 37.4 3.8e-07 1.1 1.1 1 -SEQ45#25#65#+ 37.4 3.7e-07 1.1 1.1 1 -SEQ32#25#66#+ 37.0 4.4e-07 1.1 1.1 1 -SEQ16#25#65#+ 35.6 8.9e-07 1.1 1.1 1 -SEQ19#26#75#+ 35.1 1.2e-06 1.1 1.1 1 -SEQ36#26#66#+ 34.4 1.6e-06 1.1 1.1 1 -SEQ14#26#66#+ 33.9 2e-06 1.1 1.1 1 -SEQ22#26#65#+ 31.6 5.9e-06 1.1 1.1 1 -SEQ39#23#62#+ 26.1 8.3e-05 1.1 1.1 1 -SEQ48#24#64#+ 26.1 8.5e-05 1.1 1.1 1 -SEQ29#21#59#+ 24.3 0.0002 1.1 1.1 1 -SEQ32#26#73#+ 54.0 8.3e-10 1.2 1.2 2 -SEQ31#26#73#+ 53.2 1.2e-09 1.2 1.2 2 -SEQ9#26#73#+ 52.7 1.4e-09 1.2 1.2 2 -SEQ28#25#71#+ 51.1 2.8e-09 1.2 1.2 2 -SEQ11#26#82#+ 50.0 4.6e-09 1.2 1.2 2 -SEQ15#26#73#+ 49.2 6.6e-09 1.2 1.2 2 -SEQ19#27#82#+ 49.1 6.9e-09 1.2 1.2 2 -SEQ50#26#73#+ 48.8 7.8e-09 1.2 1.2 2 -SEQ17#25#71#+ 48.2 9.8e-09 1.2 1.2 2 -SEQ23#27#74#+ 47.1 1.6e-08 1.2 1.2 2 -SEQ12#26#82#+ 47.0 1.7e-08 1.2 1.2 2 -SEQ13#26#82#+ 46.5 2e-08 1.2 1.2 2 -SEQ36#26#73#+ 46.5 2.1e-08 1.2 1.2 2 -SEQ10#26#73#+ 45.6 3e-08 1.2 1.2 2 -SEQ18#26#72#+ 45.5 3.1e-08 1.2 1.2 2 -SEQ46#26#72#+ 45.5 3.2e-08 1.2 1.2 2 -SEQ21#27#74#+ 45.0 3.9e-08 1.2 1.2 2 -SEQ24#26#73#+ 45.0 4e-08 1.2 1.2 2 -SEQ4#26#73#+ 44.8 4.4e-08 1.2 1.2 2 -SEQ33#26#72#+ 42.6 1.1e-07 1.2 1.2 2 -SEQ45#25#72#+ 41.4 1.8e-07 1.2 1.2 2 -SEQ30#25#72#+ 41.2 2e-07 1.2 1.2 2 -SEQ20#25#72#+ 40.8 2.4e-07 1.2 1.2 2 -SEQ35#26#72#+ 40.7 2.5e-07 1.2 1.2 2 -SEQ16#25#72#+ 40.4 2.8e-07 1.2 1.2 2 -SEQ26#26#72#+ 39.4 4.4e-07 1.2 1.2 2 -SEQ5#26#72#+ 39.2 4.9e-07 1.2 1.2 2 -SEQ37#45#82#+ 32.4 9e-06 1.2 1.2 2 -SEQ40#21#66#+ 30.4 2.1e-05 1.2 1.2 2 -SEQ7#45#83#+ 26.7 0.00011 1.2 1.2 2 -SEQ43#27#71#+ 25.6 0.00017 1.2 1.2 2 -SEQ42#1#50#+ 45.6 2.6e-16 1.3 1.3 3 -SEQ38#1#50#+ 45.2 3.9e-16 1.3 1.3 3 -SEQ44#1#51#+ 43.7 1.7e-15 1.3 1.3 3 -SEQ6#1#51#+ 43.6 1.7e-15 1.3 1.3 3 -SEQ41#1#50#+ 40.6 3.3e-14 1.3 1.3 3 -SEQ8#1#48#+ 39.1 1.4e-13 1.3 1.3 3 -SEQ47#2#50#+ 38.0 4e-13 1.3 1.3 3 -SEQ48#1#52#+ 37.9 4.5e-13 1.3 1.3 3 -SEQ49#1#50#+ 35.7 3.9e-12 1.3 1.3 3 -SEQ43#1#52#+ 35.3 5.8e-12 1.3 1.3 3 -SEQ20#1#48#+ 29.7 1.3e-09 1.3 1.3 3 -SEQ15#1#49#+ 29.2 2.1e-09 1.3 1.3 3 -SEQ50#1#53#+ 29.0 2.5e-09 1.3 1.3 3 -SEQ39#1#50#+ 28.6 3.7e-09 1.3 1.3 3 -SEQ14#1#53#+ 27.9 7e-09 1.3 1.3 3 -SEQ4#1#53#+ 26.6 2.6e-08 1.3 1.3 3 -SEQ21#1#52#+ 24.0 3.2e-07 1.3 1.3 3 -SEQ10#1#53#+ 23.2 7.4e-07 1.3 1.3 3 -SEQ34#1#51#+ 22.2 1.9e-06 1.3 1.3 3 -SEQ74#1#50#+ 86.4 6.3e-48 1.4 1.4 4 -SEQ75#1#50#+ 83.9 1.3e-46 1.4 1.4 4 -SEQ72#1#50#+ 82.8 5.2e-46 1.4 1.4 4 -SEQ73#1#50#+ 79.7 2.1e-44 1.4 1.4 4 -SEQ84#1#50#+ 37.2 3.7e-21 1.5 1.5 5 -SEQ78#1#50#+ 36.0 3.2e-20 1.5 1.5 5 -SEQ87#1#49#+ 32.1 2.5e-17 1.5 1.5 5 -SEQ85#1#50#+ 31.3 1e-16 1.5 1.5 5 -SEQ86#1#50#+ 31.2 1.2e-16 1.5 1.5 5 -SEQ56#1#53#+ 30.0 9.3e-16 1.5 1.5 5 -SEQ58#1#50#+ 28.0 3.4e-14 1.5 1.5 5 -SEQ47#3#53#+ 27.2 1.3e-13 1.5 1.5 5 -SEQ82#1#51#+ 25.3 3.6e-12 1.5 1.5 5 -SEQ76#1#49#+ 24.4 1.5e-11 1.5 1.5 5 -SEQ79#1#50#+ 22.6 3.5e-10 1.5 1.5 5 +SEQ31#1#73#+ 88.9 1.2e-150 1.1 1.1 1 +SEQ11#1#82#+ 88.3 8e-150 1.1 1.1 1 +SEQ9#1#73#+ 87.8 4.6e-149 1.1 1.1 1 +SEQ32#1#73#+ 87.3 2.6e-148 1.1 1.1 1 +SEQ13#1#82#+ 86.3 8.9e-147 1.1 1.1 1 +SEQ36#1#73#+ 83.0 1.1e-141 1.1 1.1 1 +SEQ12#1#82#+ 82.7 3.1e-141 1.1 1.1 1 +SEQ26#1#72#+ 82.0 4.9e-140 1.1 1.1 1 +SEQ5#1#72#+ 81.7 1.3e-139 1.1 1.1 1 +SEQ50#1#73#+ 80.8 3.1e-138 1.1 1.1 1 +SEQ28#1#71#+ 80.7 4.6e-138 1.1 1.1 1 +SEQ15#1#73#+ 80.6 5.9e-138 1.1 1.1 1 +SEQ24#1#73#+ 80.3 1.5e-137 1.1 1.1 1 +SEQ4#1#73#+ 79.2 7.3e-136 1.1 1.1 1 +SEQ46#1#72#+ 78.4 1.3e-134 1.1 1.1 1 +SEQ17#1#71#+ 77.7 1.6e-133 1.1 1.1 1 +SEQ10#1#73#+ 76.3 2.8e-131 1.1 1.1 1 +SEQ37#1#82#+ 76.3 2.5e-131 1.1 1.1 1 +SEQ23#1#74#+ 75.9 1.2e-130 1.1 1.1 1 +SEQ20#1#72#+ 75.8 1.7e-130 1.1 1.1 1 +SEQ16#1#72#+ 74.9 4e-129 1.1 1.1 1 +SEQ30#1#72#+ 74.9 4e-129 1.1 1.1 1 +SEQ21#1#74#+ 74.8 4.8e-129 1.1 1.1 1 +SEQ18#1#72#+ 72.9 4.3e-126 1.1 1.1 1 +SEQ35#1#72#+ 71.9 1.2e-124 1.1 1.1 1 +SEQ45#1#72#+ 71.6 4.5e-124 1.1 1.1 1 +SEQ7#1#83#+ 71.2 2e-123 1.1 1.1 1 +SEQ33#1#72#+ 69.2 2e-120 1.1 1.1 1 +SEQ19#1#82#+ 69.0 4e-120 1.1 1.1 1 +SEQ22#1#72#+ 48.1 5.1e-88 1.1 1.1 1 +SEQ40#1#66#+ 44.2 4.7e-82 1.1 1.1 1 +SEQ29#1#66#+ 31.0 8.7e-62 1.1 1.1 1 +SEQ14#1#73#+ 29.5 2.2e-59 1.1 1.1 1 +SEQ39#1#69#+ 21.6 2.5e-47 1.1 1.1 1 +SEQ74#1#100#+ 163.2 7.9e-68 1.2 1.2 2 +SEQ72#1#100#+ 163.1 8.9e-68 1.2 1.2 2 +SEQ73#1#100#+ 161.5 3.4e-67 1.2 1.2 2 +SEQ75#1#100#+ 160.5 8.2e-67 1.2 1.2 2 diff -r e080ebe95476 -r b5f49453af8c test-data/RESULTS/partitions/final_partition.used_cmsearch --- a/test-data/RESULTS/partitions/final_partition.used_cmsearch Sat Mar 25 16:50:38 2017 -0400 +++ b/test-data/RESULTS/partitions/final_partition.used_cmsearch Wed May 31 14:53:30 2017 -0400 @@ -1,5 +1,2 @@ -1.3 +1.1 1.2 -1.1 -1.4 -1.5