# HG changeset patch
# User rnateam
# Date 1511171448 18000
# Node ID c7ca5d1734823439b4119048d0ab8d4a6b004ea5
# Parent  98ceca65a0b6ba87b6b51192d4d495d63b12bd23
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e

diff -r 98ceca65a0b6 -r c7ca5d173482 glob_report.xml
--- a/glob_report.xml	Tue Jul 18 01:41:51 2017 -0400
+++ b/glob_report.xml	Mon Nov 20 04:50:48 2017 -0500
@@ -1,14 +1,14 @@
-<tool id="glob_report" name="cluster_collection_report" version="0.2">
+<tool id="glob_report" name="cluster_collection_report" version="0.3" >
   <requirements>
-    <requirement type="package" version="0.3.1">graphclust-wrappers</requirement>
+    <requirement type="package" version="0.5.2">graphclust-wrappers</requirement>
     <requirement type="package" version='0.5'>perl-array-utils</requirement>
     <requirement type="package" version='0.18.1'>scikit-learn</requirement>
     <requirement type="package" version='1.8.10'>locarna</requirement>
     <requirement type="package" version='2.1'>rnaz</requirement>
-    <requirement type="package" version="1.1">infernal</requirement>
+    <requirement type="package" version="1.1.2">infernal</requirement>
     <requirement type="package" version='2.2.10'>viennarna</requirement>
-    <requirement type="package" version='1.3.23'>graphicsmagick</requirement>
-    <requirement type="package" version='0.3.1'>rscape</requirement>
+    <requirement type="package" version='1.3.26'>graphicsmagick</requirement>
+    <requirement type="package" version='0.6.1'>rscape</requirement>
     <requirement type="package" version='6.0'>unzip</requirement>
     
   </requirements>
@@ -37,6 +37,8 @@
             ln -f -s  '$mods' ./MODEL/$mods.element_identifier &&
         #end for
         #set $inputFilesTrees = $inputFilesTrees[:-1]
+
+     
         'glob_res.pl'
                 ##'$inputFiles'
                 $merge_cluster_ol
@@ -72,6 +74,7 @@
 
         &&
         python '$__tool_directory__/evaluation.py'
+       
     #if $cdhit:
         &&
         python '$__tool_directory__/addCdhitseqs.py' '$cdhit'
diff -r 98ceca65a0b6 -r c7ca5d173482 test-data/1.cluster.top5.alirna.png
Binary file test-data/1.cluster.top5.alirna.png has changed
diff -r 98ceca65a0b6 -r c7ca5d173482 test-data/1.cluster.top5.aln.png
Binary file test-data/1.cluster.top5.aln.png has changed
diff -r 98ceca65a0b6 -r c7ca5d173482 test-data/1.cluster.top5.result.aln_1.R2R.sto.pdf
--- a/test-data/1.cluster.top5.result.aln_1.R2R.sto.pdf	Tue Jul 18 01:41:51 2017 -0400
+++ b/test-data/1.cluster.top5.result.aln_1.R2R.sto.pdf	Mon Nov 20 04:50:48 2017 -0500
@@ -71,6 +71,12 @@
 92.815958 30.658227 l
 S
 72 w
+81.834458 40.910727 m
+99.909458 40.910727 l
+99.909458 35.525727 l
+81.834458 35.525727 l
+h
+f
 1.44 w
 88.927958 38.218227 m
 92.815958 38.218227 l
@@ -858,7 +864,7 @@
 << /Font <</FH 5 0 R>> /ProcSet[/PDF/Text/ImageC]/XObject << >>/ExtGState<</GS0 10 0 R>>/Properties<</MC0<</Color[20224.0 -32768.0 -1.0]/Title(Layer 1)/Visible true/Preview true/Editable true/Printed true/Dimmed true>>>>>>
 endobj
 8 0 obj
-14532
+14624
 endobj
 1 0 obj
 <<
@@ -883,21 +889,21 @@
 xref
 0 11
 0000000000 65535 f 
-0000015224 00000 n 
-0000015347 00000 n 
-0000015289 00000 n 
+0000015316 00000 n 
+0000015439 00000 n 
+0000015381 00000 n 
 0000000116 00000 n 
 0000000009 00000 n 
 0000000152 00000 n 
 0000000270 00000 n 
-0000015203 00000 n 
-0000014965 00000 n 
-0000014853 00000 n 
+0000015295 00000 n 
+0000015057 00000 n 
+0000014945 00000 n 
 trailer
 <<
 /Size 11
 /Root 1 0 R
 >>
 startxref
-15393
+15485
 %%EOF
diff -r 98ceca65a0b6 -r c7ca5d173482 test-data/2.cluster.top5.alirna.png
Binary file test-data/2.cluster.top5.alirna.png has changed
diff -r 98ceca65a0b6 -r c7ca5d173482 test-data/2.cluster.top5.aln.png
Binary file test-data/2.cluster.top5.aln.png has changed
diff -r 98ceca65a0b6 -r c7ca5d173482 test-data/RESULTS.zip
Binary file test-data/RESULTS.zip has changed