Mercurial > repos > rnateam > graphclust_postprocessing

changeset 7:870dfc90473f draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit b3fe72d71e27a7b66621ecaae3e2da4bc4ca6986
author rnateam
date Thu, 23 Feb 2017 13:03:17 -0500
parents 869a6e807d76
children 9a69a6098b71
files glob_report.xml test-data/1.cluster.top5.result.aln_1.R2R.sto.pdf test-data/2.cluster.top5.result.aln_1.R2R.sto.pdf test-data/3.cluster.top5.result.aln_1.R2R.sto.pdf test-data/4.cluster.top5.result.aln_1.R2R.sto.pdf test-data/RESULTS.zip
diffstat 6 files changed, 2377 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/glob_report.xml	Wed Feb 22 16:51:06 2017 -0500
+++ b/glob_report.xml	Thu Feb 23 13:03:17 2017 -0500
@@ -8,6 +8,8 @@
     <requirement type="package" version="1.1">infernal</requirement>
     <requirement type="package" version='2.2.10'>viennarna</requirement>
     <requirement type="package" version='1.3.23'>graphicsmagick</requirement>
+    <requirement type="package" version='0.3.1'>rscape</requirement>
+
   </requirements>
   <stdio>
     <exit_code range="1:" />
@@ -29,7 +31,7 @@
             #set $inputFilesTrees += str($mods)+','
         #end for
         #set $inputFilesTrees = $inputFilesTrees[:-1]
-      'glob_res.pl'
+        'glob_res.pl'
                 '$inputFiles'
                 $merge_cluster_ol
                 $merge_overlap
@@ -153,6 +155,9 @@
     <collection name="topDot" type="list" label="Top $results_top_num aln.ps">
       <discover_datasets format="png" pattern="(?P&lt;name&gt;^.*\.aln.png$)"  />
     </collection>
+    <collection name="rscapePlot" type="list" label="R-scape Plot">
+      <discover_datasets format="pdf" pattern="(?P&lt;name&gt;^.*\.pdf$)"  />
+    </collection>
     <data name="RESULTS_zip" format="zip" from_work_dir="RESULTS.zip" label="RESULTS.zip"  />
   </outputs>
   <tests>
@@ -212,7 +217,15 @@
         <element name="3.cluster.top5.aln.png" file="3.cluster.top5.aln.png"  ftype="png" compare="sim_size" />
         <element name="4.cluster.top5.aln.png" file="4.cluster.top5.aln.png"  ftype="png" compare="sim_size" />
       </output_collection>
-      <output name="RESULTS_zip" file="RESULTS.zip" ftype="zip" compare="sim_size" />
+
+      <output_collection name="rscapePlot" type="list">
+        <element name="1.cluster.top5.result.aln_1.R2R.sto.pdf" file="1.cluster.top5.result.aln_1.R2R.sto.pdf"  ftype="pdf" compare="sim_size" />
+        <element name="2.cluster.top5.result.aln_1.R2R.sto.pdf" file="2.cluster.top5.result.aln_1.R2R.sto.pdf"  ftype="pdf" compare="sim_size" />
+        <element name="3.cluster.top5.result.aln_1.R2R.sto.pdf" file="3.cluster.top5.result.aln_1.R2R.sto.pdf"  ftype="pdf" compare="sim_size" />
+        <element name="4.cluster.top5.result.aln_1.R2R.sto.pdf" file="4.cluster.top5.result.aln_1.R2R.sto.pdf"  ftype="pdf" compare="sim_size" />
+      </output_collection>
+
+      <output name="RESULTS_zip" file="RESULTS.zip" ftype="zip" compare="sim_size" delta="20000"/>
 
     </test>
   </tests>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/1.cluster.top5.result.aln_1.R2R.sto.pdf	Thu Feb 23 13:03:17 2017 -0500
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