Mercurial > repos > rnateam > graphclust_preprocessing

comparison test-data/sample_4_all.stk @ 11:c0c9d19bc7b2 draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust commit 746497a64b955f6b9afc1944d1c1d8d877e53267
author rnateam
date Tue, 18 Jul 2017 01:43:49 -0400
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equal deleted inserted replaced
10:16bcaef3dc1e 11:c0c9d19bc7b2
1 # STOCKHOLM 1.0
2 #=GF SQ 5
3 ath1 TAACTCGGAAGTTGTCGATTGAACAAACTTGAGGTTTTGTCGTTTCCACG---------GCTGTCGTAGACGGTGGCAGCTGCTGCTGCAGCGGTTGATGATAGTGGTAGGCGGAGAAGT
4 bol1 TTACTTTGAAGTTGTCAACTAGGCAACCGCGAGGTTTTGTCTCCTTGACGGTCTTCAACACCGCTGTTGATGGTGGTGGCACG---TGTAACGTTTGGTGGTTATAGTAAGCTGTCAAGT
5 bna1 TTACTTTGAAGTTGTCAACTAGGCAACCGCGAGGTTTTGTCTCCTTGACGGTCTTCAACACCGCTGTTGATGGTGGCGGCACG---TGTAACGTTTGATGGTTATAGTAAGCTGTCAAGT
6 bra1 TTACTCGGAAGTTGTCAACTAGGGAACCGCGAGGTTTTGTCGCCTTGACGGTCTTCAACACCGTCGTCGATGGT---GGCACG---------------TGATTATAGTATGCGGTCAAGT
7 aly1 TTACTCGGAAGTTGTCGATTGAACAAACTTGAGGTTTTATCGTCTTCACATCTCTCACCGCCGCCGGAGACGGTGGCTGCTGCTGCTGCAGCGGTTGATGAGAGTAGTAGGCGGAGAAGT
8 //
9 # STOCKHOLM 1.0
10 #=GF SQ 5
11 ath2 GGTCGAGAAAGGAACCGGCAATATCGAACCGGAAAAATCCGAGATAACCACGTTTTGCATAAACTGGTACATAAGCAGAACGTCACCGTTAACCAAAGCCATGTCCTTAAACCGGTCTCG
12 bol2 AGCAGAGAACGGAACCGGTAGAATTGAACCGGTTGAACCGGAGCTGACCACGTTTTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAACGCCATGTCTTTAAACCGGTCTCG
13 bna2 AGCAGAGAACGGAACCGGTAGAATTGAACCGGTTGAACCGGAGCTGACCACGTTTTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAGCGCCATGTCTTTAAACCGGTCTCG
14 bra2 AGCAGAGAACGGAACCGGTAAAATCGAACCGGTTGAACCGGAGCTGACCACGTTCTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAACGCCATGTCTTTAAACCGGTCTCG
15 aly2 GGTCGAGAAAGGAACCGGCAAAATCGAACCGGAAACATTCGAGCTAACCACGTTTTGCATAAACTGGTACATAAGCAAAACGTCACCGTTAACCAAAGCCACGTCCTTAAACCGGTCTCG
16 //
17 # STOCKHOLM 1.0
18 #=GF SQ 5
19 ath3 CTGCACCATCTCCAAACAGAGCAGCTCCAACTAGGTCGTACGGACGCGCTTTGTTTGGTGGCCGAAATCCGAGAATGGTGGTTTCAGAGGTTGTGAGCAGAACACGGCTTCCGGGGTTGTTCTCAGCAATGTCTTTGGCCACACGGAGGCCAGTCACACCTCCGTAGCATCCCAGAAAATACAGCATCACTCTGTTCACGTCATTCCTCAGGCCTAGCTTTGCTGAGAGGTAAAGGTCAC
20 bna3 CCGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGGGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGCACACGGCTTCCGGGGTTGTTCTCGGCTATGTCTTTGGCGACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAATAAAGCATCACTCTGTTCACGTCGTTCTTTAAGCCTAGCTTGGCGGAGAGGTAAAGGTCAC
21 bol3 CCGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGAGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGCACACGGCTTCCGGGGTTGTTCTCGGCTATGTCTTTGGCGACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAGTAAAGCATTACTCTGTTCACGTCGCTCTTTAGGCCTAGCTTGGCTGAGAGGTAAAGGTCGC
22 bra3 CTGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGGGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGAACACGGCTTCCGGGGTTGTTCTCAGCGATGTCTTTGGCCACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAATAAAGCATTACTCTGTTCACGTCGCTCTTTAGGCCTAGCTTGGCTGAGAGGTAAAGGTCGC
23 aly3 CTGCACCATCTCCAAACAGAGCAGCTCCAACTAGGTCGTACGGACGAGCTTTGTTTGGTGGGCGAAACCCGAGAATGGTGGTTTCAGAGGTTGTGAGCAGAACACGGCTTCCCGGGTTGTTCTCAGCAATGTCTTTGGCCACACGGAGGCCAGTCACACCTCCGTAGCATCCCAGAAAATACAGCATCACTCTGTTCACGTCATTCCTCAGGCCTAGCTTTGCTGAGAGGTAAAGGTCAC
24 //
25 # STOCKHOLM 1.0
26 #=GF SQ 5
27 ath4 A----------TGAAGGAGGACTACTTACGAGTGTTGGAAGCGGCAGCGGCAGTGACCGCAGCTGAAGAGCTTGTCGGAGAAACCGACATCACCGCACATGCAACACACTCTCTCCATGa
28 bna4 ATATATAGCCTTGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGTTTGTCGGAAAATCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT
29 bol4 ATATATAGCCTTGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGTTTGTCGGAAAATCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT
30 bra4 ATATATGGCCTAGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGCTTGTCGGAAAAGCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT
31 aly4 -----------TAAAGGAGGACTACTTACGAGTGCTGTAAGCGGCAGCGGCAGTGCCCGCAGCTGAAGAGCTTGTCGGAGAAACCGACGTCGCCGCACATGCAACATACTCTCTCCATGA
32 //
33 # STOCKHOLM 1.0
34 #=GF SQ 5
35 ath5 AACGGCGTCAAGGATCTCCTTCAAATTCTTGTGCCTTACCACCA-ATTTGGT--------------------CTTGTAGCAGTCGGAAGAAGTGGTAACATGGTCAGAGTGCTC
36 bra5 GATCGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGGCGACATCTCCT------------CCTCCACCTCTATAGCTACCTGAAAACGTCGTCGCATCATCTGCTTTATC
37 bol5 GATGGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGgcgacatctcctcctccgcctccgcctCCGCCTCTATAGCTACCGCAATACGTCGTCGCATCATCTTCTTTATC
38 bna5 GATGGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGGCGACATCTCCT------CCTCCGCCTCCGCCTCTATAGCTACCGCAATACGTCGTCGCATCATCTTCTTTATC
39 aly5 AACGGCGTCGAGGATCTCCTTCAAATTCTTGTGCCTTACCACCA-ATTTGGT--------------------CTTGTAGCAGTCGGAAGAAGTGGTAACATGGTCAGAGTTGTC
40 //
41 # STOCKHOLM 1.0
42 #=GF SQ 5
43 ath6 TAAAAAATAAAGAAT---CTTACCATCACCACGACTGTTTGTTCTAGCCAACTGATAAATAGTGTAGCCTGAAGATGAAAGCTGGTGGTGGTACATGTTCACTAATTCCTCATTCCCAAC
44 bol6 TAAAATGGAGAACCTTTGCTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATTGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCACCAATTCTTCATTTGCAAC
45 bna6 TAAAATGGAGAACCTTTACTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATTGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCACCAATTCTTCATTTGCAAC
46 bra6 TAAAATGGAGAACCTTTACTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATCGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCGCCAATTCTTCATTTGCAAC
47 aly6 TaaaaaaaaaaGAAT---GTTACCATCACCACGACTGTTTGTTCTAGCCAACTGGAAAATAGTGTAGCCAGAAGTGCCAAGCTGGTCGTGGTACATGTTGACTAATTCCTCATTCCCAAC
48 //
49 # STOCKHOLM 1.0
50 #=GF SQ 5
51 ath7 TGGATCTCTGGATCAGCTGTGCGACCAGACGTGGATGATCCAAACGCTAAACGCCTTTGAGCGATTGGTCGAACACGTGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGATTG---C
52 bra7 TGAAGCTCCGGGTCAGCAGTTCGGCCGGACGTTGATGATCCAAACGCTAAACTCCTTTGAACGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC
53 bol7 TGAAGCTCCGGATCAGCAGCTCGGCCGGACGTTGAAGATCCAAACGCTAAACGACTTTGAGCGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC
54 bna7 TGAAGCTCCGGATCAGCAGCTCGGCCGGACGTTGAAGATCCAAACGCTAAACGACTTTGAGCGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC
55 aly7 TGGATCTCTGGATCAGCGGTGCGGCCAGACGTGGATGATCCAAACGCTAAACGCCTTTGAGCGATTGGTCGAACACGGGAACGCGCCGCAGAAGCAAACGCTAATAATCGGGATTGCATC
56 //
57 # STOCKHOLM 1.0
58 #=GF SQ 5
59 ath8 TTGCTCTTCTAAACTCGGTCGGGGAGTATCGTCTACGATTTCTTCCGCCGCCGTTTTAGGGTTTGCAACATCATCCATACCCTGAAACACAAGCAATCACCAAAA---ACTTAAACAAAG
60 bra8 TTGCTCTTCTAAACTTGACCGTGGTTGTTCATCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCTACATCATCCATACCCTGAAGCATAATCAATCACAAAACAATATTT-AAAAGAG
61 bol8 TtgttgtTctaaacttgaccgtggttGTTCGTCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCCACGTCATCCATACCCTGAAGCATAATCAATAACAAAACAATATTT-AAAAGA-
62 bna8 TTGTTGTTCTAAACTTGACCGTGGTTGTTCGTCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCCACGTCATCCATACCCTGAAGCATAATCAATAACAAAACAATATTT-AAAAGA-
63 aly8 TTGCTCTTCTAAACTCGGTCGTGGGGTGTCGTCTACGATTTCATCCGCCGCCGTTTTAGGGTTTGCAACATCATCCATAACCTGAAACACAAGGAATCAC--------ACTT-AACAGAG
64 //
65 # STOCKHOLM 1.0
66 #=GF SQ 5
67 ath9 CGTAGAAAAGGCTTGACCGCAAAATGGATATATTATATGTACCTATGAGTTTTTCGAGCTTTGTTTGAAGTAGTAATCCTC---TCTACAATATTGAAGCCAA-CTATGGTCAAACCACAATCAAATTCCCTATAGCTCCTCaaaaaaaaCTACTCAAGC
68 bna9 C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGTAGTAATCCTCTTCCCTGTAATATTCAAGCAAAGCTGTGAGTAAACTACAACC----------TATTTGGGCAAA---------------
69 bol9 C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGTAGTAATCCTCTTCCCTGTAATATTCAAGCAAAGCTGTGAGTAAACTACAACC----------TATTTGGGCAAA---------------
70 bra9 C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGAAGTAATCCTCTTCCCTATAATATCCAAGCAAAGCTGTGAGTAAACTGCAACC----------TAATTGGGCAAA---------------
71 aly9 CATAGAAAAGGCTTGACCACAAACTGGA-----TATATATACCTATGAGTTTTTCGAGCTTTGTTTGAAGTAGTAATCCTC---CCTAAAATATTGAAGCCAA-CTACTGTCAAACCACAATAAATTTCCCTATAGCTCCTCAAA---------------
72 //