Mercurial > repos > rnateam > graphclust_preprocessing

view test-data/sample_4_all.stk @ 12:8a1786cdcf95 draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust commit 6767a5ffb02052c844e9d862c79912f998f39d8e
author rnateam
date Mon, 20 Nov 2017 04:55:04 -0500
parents c0c9d19bc7b2
children
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# STOCKHOLM 1.0
#=GF SQ 5
ath1  TAACTCGGAAGTTGTCGATTGAACAAACTTGAGGTTTTGTCGTTTCCACG---------GCTGTCGTAGACGGTGGCAGCTGCTGCTGCAGCGGTTGATGATAGTGGTAGGCGGAGAAGT 
bol1  TTACTTTGAAGTTGTCAACTAGGCAACCGCGAGGTTTTGTCTCCTTGACGGTCTTCAACACCGCTGTTGATGGTGGTGGCACG---TGTAACGTTTGGTGGTTATAGTAAGCTGTCAAGT 
bna1  TTACTTTGAAGTTGTCAACTAGGCAACCGCGAGGTTTTGTCTCCTTGACGGTCTTCAACACCGCTGTTGATGGTGGCGGCACG---TGTAACGTTTGATGGTTATAGTAAGCTGTCAAGT 
bra1  TTACTCGGAAGTTGTCAACTAGGGAACCGCGAGGTTTTGTCGCCTTGACGGTCTTCAACACCGTCGTCGATGGT---GGCACG---------------TGATTATAGTATGCGGTCAAGT 
aly1  TTACTCGGAAGTTGTCGATTGAACAAACTTGAGGTTTTATCGTCTTCACATCTCTCACCGCCGCCGGAGACGGTGGCTGCTGCTGCTGCAGCGGTTGATGAGAGTAGTAGGCGGAGAAGT 
//
# STOCKHOLM 1.0
#=GF SQ 5
ath2  GGTCGAGAAAGGAACCGGCAATATCGAACCGGAAAAATCCGAGATAACCACGTTTTGCATAAACTGGTACATAAGCAGAACGTCACCGTTAACCAAAGCCATGTCCTTAAACCGGTCTCG 
bol2  AGCAGAGAACGGAACCGGTAGAATTGAACCGGTTGAACCGGAGCTGACCACGTTTTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAACGCCATGTCTTTAAACCGGTCTCG 
bna2  AGCAGAGAACGGAACCGGTAGAATTGAACCGGTTGAACCGGAGCTGACCACGTTTTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAGCGCCATGTCTTTAAACCGGTCTCG 
bra2  AGCAGAGAACGGAACCGGTAAAATCGAACCGGTTGAACCGGAGCTGACCACGTTCTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAACGCCATGTCTTTAAACCGGTCTCG 
aly2  GGTCGAGAAAGGAACCGGCAAAATCGAACCGGAAACATTCGAGCTAACCACGTTTTGCATAAACTGGTACATAAGCAAAACGTCACCGTTAACCAAAGCCACGTCCTTAAACCGGTCTCG 
//
# STOCKHOLM 1.0
#=GF SQ 5
ath3  CTGCACCATCTCCAAACAGAGCAGCTCCAACTAGGTCGTACGGACGCGCTTTGTTTGGTGGCCGAAATCCGAGAATGGTGGTTTCAGAGGTTGTGAGCAGAACACGGCTTCCGGGGTTGTTCTCAGCAATGTCTTTGGCCACACGGAGGCCAGTCACACCTCCGTAGCATCCCAGAAAATACAGCATCACTCTGTTCACGTCATTCCTCAGGCCTAGCTTTGCTGAGAGGTAAAGGTCAC 
bna3  CCGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGGGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGCACACGGCTTCCGGGGTTGTTCTCGGCTATGTCTTTGGCGACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAATAAAGCATCACTCTGTTCACGTCGTTCTTTAAGCCTAGCTTGGCGGAGAGGTAAAGGTCAC 
bol3  CCGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGAGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGCACACGGCTTCCGGGGTTGTTCTCGGCTATGTCTTTGGCGACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAGTAAAGCATTACTCTGTTCACGTCGCTCTTTAGGCCTAGCTTGGCTGAGAGGTAAAGGTCGC 
bra3  CTGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGGGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGAACACGGCTTCCGGGGTTGTTCTCAGCGATGTCTTTGGCCACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAATAAAGCATTACTCTGTTCACGTCGCTCTTTAGGCCTAGCTTGGCTGAGAGGTAAAGGTCGC 
aly3  CTGCACCATCTCCAAACAGAGCAGCTCCAACTAGGTCGTACGGACGAGCTTTGTTTGGTGGGCGAAACCCGAGAATGGTGGTTTCAGAGGTTGTGAGCAGAACACGGCTTCCCGGGTTGTTCTCAGCAATGTCTTTGGCCACACGGAGGCCAGTCACACCTCCGTAGCATCCCAGAAAATACAGCATCACTCTGTTCACGTCATTCCTCAGGCCTAGCTTTGCTGAGAGGTAAAGGTCAC 
//
# STOCKHOLM 1.0
#=GF SQ 5
ath4  A----------TGAAGGAGGACTACTTACGAGTGTTGGAAGCGGCAGCGGCAGTGACCGCAGCTGAAGAGCTTGTCGGAGAAACCGACATCACCGCACATGCAACACACTCTCTCCATGa 
bna4  ATATATAGCCTTGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGTTTGTCGGAAAATCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT 
bol4  ATATATAGCCTTGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGTTTGTCGGAAAATCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT 
bra4  ATATATGGCCTAGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGCTTGTCGGAAAAGCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT 
aly4  -----------TAAAGGAGGACTACTTACGAGTGCTGTAAGCGGCAGCGGCAGTGCCCGCAGCTGAAGAGCTTGTCGGAGAAACCGACGTCGCCGCACATGCAACATACTCTCTCCATGA 
//
# STOCKHOLM 1.0
#=GF SQ 5
ath5  AACGGCGTCAAGGATCTCCTTCAAATTCTTGTGCCTTACCACCA-ATTTGGT--------------------CTTGTAGCAGTCGGAAGAAGTGGTAACATGGTCAGAGTGCTC 
bra5  GATCGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGGCGACATCTCCT------------CCTCCACCTCTATAGCTACCTGAAAACGTCGTCGCATCATCTGCTTTATC 
bol5  GATGGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGgcgacatctcctcctccgcctccgcctCCGCCTCTATAGCTACCGCAATACGTCGTCGCATCATCTTCTTTATC 
bna5  GATGGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGGCGACATCTCCT------CCTCCGCCTCCGCCTCTATAGCTACCGCAATACGTCGTCGCATCATCTTCTTTATC 
aly5  AACGGCGTCGAGGATCTCCTTCAAATTCTTGTGCCTTACCACCA-ATTTGGT--------------------CTTGTAGCAGTCGGAAGAAGTGGTAACATGGTCAGAGTTGTC 
//
# STOCKHOLM 1.0
#=GF SQ 5
ath6  TAAAAAATAAAGAAT---CTTACCATCACCACGACTGTTTGTTCTAGCCAACTGATAAATAGTGTAGCCTGAAGATGAAAGCTGGTGGTGGTACATGTTCACTAATTCCTCATTCCCAAC 
bol6  TAAAATGGAGAACCTTTGCTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATTGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCACCAATTCTTCATTTGCAAC 
bna6  TAAAATGGAGAACCTTTACTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATTGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCACCAATTCTTCATTTGCAAC 
bra6  TAAAATGGAGAACCTTTACTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATCGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCGCCAATTCTTCATTTGCAAC 
aly6  TaaaaaaaaaaGAAT---GTTACCATCACCACGACTGTTTGTTCTAGCCAACTGGAAAATAGTGTAGCCAGAAGTGCCAAGCTGGTCGTGGTACATGTTGACTAATTCCTCATTCCCAAC 
//
# STOCKHOLM 1.0
#=GF SQ 5
ath7  TGGATCTCTGGATCAGCTGTGCGACCAGACGTGGATGATCCAAACGCTAAACGCCTTTGAGCGATTGGTCGAACACGTGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGATTG---C 
bra7  TGAAGCTCCGGGTCAGCAGTTCGGCCGGACGTTGATGATCCAAACGCTAAACTCCTTTGAACGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC 
bol7  TGAAGCTCCGGATCAGCAGCTCGGCCGGACGTTGAAGATCCAAACGCTAAACGACTTTGAGCGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC 
bna7  TGAAGCTCCGGATCAGCAGCTCGGCCGGACGTTGAAGATCCAAACGCTAAACGACTTTGAGCGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC 
aly7  TGGATCTCTGGATCAGCGGTGCGGCCAGACGTGGATGATCCAAACGCTAAACGCCTTTGAGCGATTGGTCGAACACGGGAACGCGCCGCAGAAGCAAACGCTAATAATCGGGATTGCATC 
//
# STOCKHOLM 1.0
#=GF SQ 5
ath8  TTGCTCTTCTAAACTCGGTCGGGGAGTATCGTCTACGATTTCTTCCGCCGCCGTTTTAGGGTTTGCAACATCATCCATACCCTGAAACACAAGCAATCACCAAAA---ACTTAAACAAAG 
bra8  TTGCTCTTCTAAACTTGACCGTGGTTGTTCATCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCTACATCATCCATACCCTGAAGCATAATCAATCACAAAACAATATTT-AAAAGAG 
bol8  TtgttgtTctaaacttgaccgtggttGTTCGTCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCCACGTCATCCATACCCTGAAGCATAATCAATAACAAAACAATATTT-AAAAGA- 
bna8  TTGTTGTTCTAAACTTGACCGTGGTTGTTCGTCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCCACGTCATCCATACCCTGAAGCATAATCAATAACAAAACAATATTT-AAAAGA- 
aly8  TTGCTCTTCTAAACTCGGTCGTGGGGTGTCGTCTACGATTTCATCCGCCGCCGTTTTAGGGTTTGCAACATCATCCATAACCTGAAACACAAGGAATCAC--------ACTT-AACAGAG 
//
# STOCKHOLM 1.0
#=GF SQ 5
ath9  CGTAGAAAAGGCTTGACCGCAAAATGGATATATTATATGTACCTATGAGTTTTTCGAGCTTTGTTTGAAGTAGTAATCCTC---TCTACAATATTGAAGCCAA-CTATGGTCAAACCACAATCAAATTCCCTATAGCTCCTCaaaaaaaaCTACTCAAGC 
bna9  C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGTAGTAATCCTCTTCCCTGTAATATTCAAGCAAAGCTGTGAGTAAACTACAACC----------TATTTGGGCAAA--------------- 
bol9  C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGTAGTAATCCTCTTCCCTGTAATATTCAAGCAAAGCTGTGAGTAAACTACAACC----------TATTTGGGCAAA--------------- 
bra9  C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGAAGTAATCCTCTTCCCTATAATATCCAAGCAAAGCTGTGAGTAAACTGCAACC----------TAATTGGGCAAA--------------- 
aly9  CATAGAAAAGGCTTGACCACAAACTGGA-----TATATATACCTATGAGTTTTTCGAGCTTTGTTTGAAGTAGTAATCCTC---CCTAAAATATTGAAGCCAA-CTACTGTCAAACCACAATAAATTTCCCTATAGCTCCTCAAA--------------- 
//