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comparison intarna.xml @ 5:233dfabc8592 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna commit 9f58716ffd4e4e223d37046318818c39338c4880
author rnateam
date Tue, 10 Apr 2018 09:19:19 -0400
parents e1d64afef3ba
children 3f6715821198
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4:e1d64afef3ba 5:233dfabc8592
1 <tool id="intarna" name="IntaRNA" version="2.1.0.1"> 1 <tool id="intarna" name="IntaRNA" version="2.1.0.2">
2 <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description> 2 <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description>
3 <macros> 3 <macros>
4 <macro name="query_macro"> 4 <macro name="query_macro">
5 <param name="_query" argument="--query" format="fasta" type="data" label="Query sequence(s)" help="Sequences have to use IUPAC nucleotide encoding. File must be in FASTA format" /> 5 <param name="_query" argument="--query" format="fasta" type="data" label="Query sequence(s)" help="Sequences have to use IUPAC nucleotide encoding. File must be in FASTA format" />
6 <conditional name="qAcc_cond"> 6 <conditional name="qAcc_cond">
126 #if $advancedOptions.target.tRegion 126 #if $advancedOptions.target.tRegion
127 --tRegion '$advancedOptions.target.tRegion' 127 --tRegion '$advancedOptions.target.tRegion'
128 #end if 128 #end if
129 129
130 ## Seed param. 130 ## Seed param.
131 --noSeed $advancedOptions.seed.noSeed 131 $advancedOptions.seed.noSeed
132 --seedBP $advancedOptions.seed.seedBP 132 --seedBP $advancedOptions.seed.seedBP
133 --seedMaxUP $advancedOptions.seed.seedMaxUP 133 --seedMaxUP $advancedOptions.seed.seedMaxUP
134 --seedQMaxUP $advancedOptions.seed.seedQMaxUP 134 --seedQMaxUP $advancedOptions.seed.seedQMaxUP
135 --seedTMaxUP $advancedOptions.seed.seedTMaxUP 135 --seedTMaxUP $advancedOptions.seed.seedTMaxUP
136 --seedMaxE $advancedOptions.seed.seedMaxE 136 --seedMaxE $advancedOptions.seed.seedMaxE
183 #end if 183 #end if
184 --tAccW $advancedOptions.target.tAccW 184 --tAccW $advancedOptions.target.tAccW
185 --tAccL $advancedOptions.target.tAccL 185 --tAccL $advancedOptions.target.tAccL
186 186
187 ## Seed param. 187 ## Seed param.
188 --noSeed $advancedOptions.seed.noSeed 188 $advancedOptions.seed.noSeed
189 --seedBP $advancedOptions.seed.seedBP 189 --seedBP $advancedOptions.seed.seedBP
190 --seedMaxUP $advancedOptions.seed.seedMaxUP 190 --seedMaxUP $advancedOptions.seed.seedMaxUP
191 191
192 ## Interaction param. 192 ## Interaction param.
193 --mode $advancedOptions.interaction.mode 193 --mode $advancedOptions.interaction.mode