Mercurial > repos > rnateam > intarna

comparison intarna.xml @ 1:34de9855c962 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna commit 8f81e944ec7edd1777f0eb679b8a425e4f58b69e-dirty
author rnateam
date Thu, 07 Sep 2017 08:47:05 -0400
parents 33c0836ea386
children 4616bc52f157
comparison
equal deleted inserted replaced
0:33c0836ea386 1:34de9855c962
1 <tool id="intarna" name="IntaRNA" version="2.0.0"> 1 <tool id="intarna" name="IntaRNA" version="2.0.4">
2 <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description> 2 <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description>
3 <macros> 3 <macros>
4 <macro name="query_macro"> 4 <macro name="query_macro">
5 <param name="_query" argument="--query" format="fasta" type="data" label="Query sequence(s)" help="Sequences have to use IUPAC nucleotide encoding. File must be in FASTA format" /> 5 <param name="_query" argument="--query" format="fasta" type="data" label="Query sequence(s)" help="Sequences have to use IUPAC nucleotide encoding. File must be in FASTA format" />
6 <conditional name="qAcc_cond"> 6 <conditional name="qAcc_cond">
82 <option value="B">in both sequences</option> 82 <option value="B">in both sequences</option>
83 </param> 83 </param>
84 </macro> 84 </macro>
85 </macros> 85 </macros>
86 <requirements> 86 <requirements>
87 <requirement type="package" version="2.0.0">intarna</requirement> 87 <requirement type="package" version="2.0.4">intarna</requirement>
88 </requirements> 88 </requirements>
89 <stdio> 89 <stdio>
90 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" /> 90 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
91 <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" /> 91 <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" />
92 </stdio> 92 </stdio>
266 </param> 266 </param>
267 <param argument="--energy" type="select" label="Energy computation" help=""> 267 <param argument="--energy" type="select" label="Energy computation" help="">
268 <!-- <option value="B">Base pair == -1 ()</option> --> 268 <!-- <option value="B">Base pair == -1 ()</option> -->
269 <option value="V" selected="true">VRNA-based computation</option> 269 <option value="V" selected="true">VRNA-based computation</option>
270 </param> 270 </param>
271 <param argument="--energyVRNA" type="data" format="*" optional="true" 271 <param argument="--energyVRNA" type="data" format="txt" optional="true"
272 label="Energy parameter file of VRNA package" help="If not provided, the default parameter set of the linked Vienna RNA package is used."/> 272 label="Energy parameter file of VRNA package" help="If not provided, the default parameter set of the linked Vienna RNA package is used."/>
273 <param argument="--temperature" type="integer" value="37" min="0" max="100" 273 <param argument="--temperature" type="integer" value="37" min="0" max="100"
274 label="Temperature [°C]" help="VRNA energy parameters"/> 274 label="Temperature [°C]" help="VRNA energy parameters"/>
275 </section> 275 </section>
276 <section name="output" title="Output Options"> 276 <section name="output" title="Output Options">