Mercurial > repos > rnateam > intarna
changeset 5:233dfabc8592 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna commit 9f58716ffd4e4e223d37046318818c39338c4880
| author | rnateam |
|---|---|
| date | Tue, 10 Apr 2018 09:19:19 -0400 |
| parents | e1d64afef3ba |
| children | 3f6715821198 |
| files | intarna.xml test-data/intarna_result.tabular |
| diffstat | 2 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/intarna.xml Fri Mar 23 17:55:25 2018 -0400 +++ b/intarna.xml Tue Apr 10 09:19:19 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="intarna" name="IntaRNA" version="2.1.0.1"> +<tool id="intarna" name="IntaRNA" version="2.1.0.2"> <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description> <macros> <macro name="query_macro"> @@ -128,7 +128,7 @@ #end if ## Seed param. - --noSeed $advancedOptions.seed.noSeed + $advancedOptions.seed.noSeed --seedBP $advancedOptions.seed.seedBP --seedMaxUP $advancedOptions.seed.seedMaxUP --seedQMaxUP $advancedOptions.seed.seedQMaxUP @@ -185,7 +185,7 @@ --tAccL $advancedOptions.target.tAccL ## Seed param. - --noSeed $advancedOptions.seed.noSeed + $advancedOptions.seed.noSeed --seedBP $advancedOptions.seed.seedBP --seedMaxUP $advancedOptions.seed.seedMaxUP
--- a/test-data/intarna_result.tabular Fri Mar 23 17:55:25 2018 -0400 +++ b/test-data/intarna_result.tabular Tue Apr 10 09:19:19 2018 -0400 @@ -1,5 +1,4 @@ id1 start1 end1 id2 start2 end2 subseqDP hybridDP E mRNA1 85 95 ncRNA1 21 32 GUGGUGAGGAG&CUCCUCACACAC (((((((((((&)))))))).))) -12.0345 -mRNA1 127 135 ncRNA2 18 25 GGCACCUGC&GCAGGGCC (((.(((((&)))))))) -7.20671 +mRNA1 52 58 ncRNA2 28 34 UCAGUUA&UGACUGA (((((((&))))))) -3.32148 mRNA2 86 97 ncRNA1 20 31 UGUGUGACGAGU&ACUCCUCACACA (((((((.((((&)))).))))))) -8.33678 -mRNA2 15 18 ncRNA2 22 25 GGCC&GGCC ((((&)))) -5.12558