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comparison test-data/haca.snoRNA-default.stdout @ 3:a80f279b4ad0 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
author bgruening
date Mon, 19 Aug 2024 18:53:00 +0000
parents e66514da3a99
children
comparison
equal deleted inserted replaced
2:e66514da3a99 3:a80f279b4ad0
1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0 1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 2.0.1
2 Copyright Sebastian Will
3
4 Compute pair probs ...
5 Compute pairwise alignments ...
6 Perform progressive alignment ...
7 2
8 3
9 alifold .((((((((........((((.(((((((......))))))).))))......))..)))))).............(((((((...((......((((((((((((.....))))))))) 4 ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAGGCACCCAUUC-CAUUCCCAGCUUGCUCCGUAGCUGGCG
10 ))).........)).))).))))......... (-62.29 = -34.50 + -27.79) 5 ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAAC---CC-UUG--AUUGUAUU-CUUGCCCUGGG---AUUAUACCAGUGG
6 ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACAC--UGUGAC-----UCAUG-GGCCCUGUUCCUGUGUCCCAGGCUCAG
7 ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG--CCCAUGGGUGA-CCCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA
8 #A1 ................................................................AAAAAA..................................................
9 #A2 ................................................................123456..................................................
10
11 ACA7 AUUGGA-----AGACACU-CUGCG-----ACA
12 ACA30 CAACUG-----UCACUCA-AUGGG-----ACA
13 ACA5 GGAUAA-----AUUUGGU-UACAG-----ACA
14 ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA
15 #A1 .............................BBB
16 #A2 .............................123
17
18 alifold .((((((..........((((..(((((........)))))..))))..........)))))).............((((((.............((((((((..........)))).))
19 ))..............)).))))......... (-53.08 = -26.63 + -26.46)
20 Results written to target directory /tmp/tmpstsz4a83/job_working_directory/000/4/working/mlocarna_results.