Mercurial > repos > rnateam > locarna_multiple

comparison test-data/haca.snoRNA-default.stdout @ 0:8414fea2a6fd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 1d1d9aac8cb96d043be07f2e4059baa3b05c2afc
author rnateam
date Wed, 28 Dec 2016 18:52:14 -0500
parents
children 7554c0df9139
comparison
equal deleted inserted replaced
-1:000000000000 0:8414fea2a6fd
1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0
2 Copyright Sebastian Will
3
4 Compute pair probs ...
5 Compute pairwise alignments ...
6 Perform progressive alignment ...
7
8
9
10 ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGG
11 ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGU
12 ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGC
13 ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCU
14 #A1 ............................................................
15 #A2 ............................................................
16
17 ACA7 AGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG
18 ACA30 GCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG
19 ACA5 UGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG
20 ACA59 GGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA
21 #A1 ....AAAAAA..................................................
22 #A2 ....123456..................................................
23
24 ACA7 AUUGGA--AGA---CACU-CUGCG-----ACA
25 ACA30 CAACUG--UCA---CUCA-AUGGG-----ACA
26 ACA5 GGAUAA--AUU---UGGU-UACAG-----ACA
27 ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA
28 #A1 .............................BBB
29 #A2 .............................123
30
31 alifold .((((((((........((((.(((((((......))))))).))))......))..)))
32 ))).............((((((.....((.....((((((((((((.....)))))))))
33 )))......)).....)).))))......... (-61.69 = -33.85 + -27.84)