Mercurial > repos > rnateam > locarna_pairwise
comparison test-data/archaea-default.stdout @ 4:4839df2b2f6b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
| author | bgruening |
|---|---|
| date | Mon, 19 Aug 2024 18:52:50 +0000 |
| parents | f3f08a777c10 |
| children |
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| 3:f3f08a777c10 | 4:4839df2b2f6b |
|---|---|
| 1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0 | 1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 2.0.1 |
| 2 Copyright Sebastian Will | |
| 3 | |
| 4 Compute pair probs ... | |
| 5 Compute pairwise alignments ... | |
| 6 Perform progressive alignment ... | |
| 7 | 2 |
| 8 | 3 |
| 4 vhuU AG-CUCACAACCGAACCC-AU------------UUGGGAGGUUGUGAGCU- | |
| 5 fwdB AU-GUUGGAGGGGAACCC-GU------------AAGGGACCCUCCAAGAU- | |
| 6 selD UUACGAUGUGCCGAACCCUUU------------AAGGGAGGCACAUCGAAA | |
| 7 hdrA GG--CACCACUCGAAGGC--U------------AAGCCAAAGUGGUG-CU- | |
| 8 vhuD GU--UCUCUCGGGAACCCGUC------------AAGGGACCGAGAGA-AC- | |
| 9 fruA ---CCUCGAGGGGAACCC-GA------------AAGGGACCCGAGAGG--- | |
| 10 fdhA CG-CCACCCUGCGAACCCAAUAUAAAAUAAUACAAGGGAGCAG-GUGGCG- | |
| 11 | |
| 9 alifold ((.(((((((((...(((.................))).))))))))))). (-31.36 = -20.01 + -11.34) | 12 alifold ((.(((((((((...(((.................))).))))))))))). (-31.36 = -20.01 + -11.34) |
| 13 Results written to target directory /tmp/tmpstsz4a83/job_working_directory/000/2/working/mlocarna_results. |