Mercurial > repos > rnateam > locarna_pairwise

diff locarna_pairwise.xml @ 2:433601e9f132 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
author rnateam
date Sat, 21 Jan 2017 17:38:54 -0500
parents b06dc2bb3716
children f3f08a777c10
line wrap: on
line diff
--- a/locarna_pairwise.xml	Fri Jan 13 16:49:33 2017 -0500
+++ b/locarna_pairwise.xml	Sat Jan 21 17:38:54 2017 -0500
@@ -48,6 +48,10 @@
 
     @HEURISTIC_ARGS@
     
+    #if str($alignment_mode.alignment_mode_selector) == "sparse"
+        @HEURISTIC_SPARSE_ARGS@
+    #end if
+
     @CONSTRAINT_ARGS@
     
     ## -------------------- output
@@ -93,7 +97,7 @@
                 <option value="global_locarna">Global alignment
                 (LocARNA)</option>
                 <option value="local_locarna">Local alignment (LocARNA)</option>
-                <option value="sparse">Global alignment (SPARSE)</option>
+                <option value="sparse">Global fast alignment (SPARSE)</option>
                 <option value="structure_sequence_local_locarna">
                     Structure and sequence local alignment (LocARNA)
                 </option>
@@ -119,7 +123,13 @@
             </when>
             <when value="local_locarna">
             </when>
-            <when value="sparse" />
+            <when value="sparse">
+                <section name="HeuristicsSparse" title="Heuristic parameters for SPARSE">
+                    <expand macro="common_heuristic_parameters_sparse" />
+                </section>
+
+             </when>
+
             <when value="structure_sequence_local_locarna" />
             <when value="structure_local_locarna" />
         </conditional>