Mercurial > repos > rnateam > locarna_pairwise
diff locarna_pairwise.xml @ 2:433601e9f132 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86
author | rnateam |
---|---|
date | Sat, 21 Jan 2017 17:38:54 -0500 |
parents | b06dc2bb3716 |
children | f3f08a777c10 |
line wrap: on
line diff
--- a/locarna_pairwise.xml Fri Jan 13 16:49:33 2017 -0500 +++ b/locarna_pairwise.xml Sat Jan 21 17:38:54 2017 -0500 @@ -48,6 +48,10 @@ @HEURISTIC_ARGS@ + #if str($alignment_mode.alignment_mode_selector) == "sparse" + @HEURISTIC_SPARSE_ARGS@ + #end if + @CONSTRAINT_ARGS@ ## -------------------- output @@ -93,7 +97,7 @@ <option value="global_locarna">Global alignment (LocARNA)</option> <option value="local_locarna">Local alignment (LocARNA)</option> - <option value="sparse">Global alignment (SPARSE)</option> + <option value="sparse">Global fast alignment (SPARSE)</option> <option value="structure_sequence_local_locarna"> Structure and sequence local alignment (LocARNA) </option> @@ -119,7 +123,13 @@ </when> <when value="local_locarna"> </when> - <when value="sparse" /> + <when value="sparse"> + <section name="HeuristicsSparse" title="Heuristic parameters for SPARSE"> + <expand macro="common_heuristic_parameters_sparse" /> + </section> + + </when> + <when value="structure_sequence_local_locarna" /> <when value="structure_local_locarna" /> </conditional>