Mercurial > repos > rnateam > locarna_pairwise
diff test-data/haca.snoRNA-default.stdout @ 4:4839df2b2f6b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
| author | bgruening |
|---|---|
| date | Mon, 19 Aug 2024 18:52:50 +0000 |
| parents | f3f08a777c10 |
| children |
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--- a/test-data/haca.snoRNA-default.stdout Mon Dec 05 14:29:12 2022 +0000 +++ b/test-data/haca.snoRNA-default.stdout Mon Aug 19 18:52:50 2024 +0000 @@ -1,10 +1,20 @@ -mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0 -Copyright Sebastian Will - -Compute pair probs ... -Compute pairwise alignments ... -Perform progressive alignment ... +mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 2.0.1 -alifold .((((((((........((((.(((((((......))))))).))))......))..)))))).............(((((((...((......((((((((((((.....))))))))) - ))).........)).))).))))......... (-62.29 = -34.50 + -27.79) +ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAGGCACCCAUUC-CAUUCCCAGCUUGCUCCGUAGCUGGCG +ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAAC---CC-UUG--AUUGUAUU-CUUGCCCUGGG---AUUAUACCAGUGG +ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACAC--UGUGAC-----UCAUG-GGCCCUGUUCCUGUGUCCCAGGCUCAG +ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG--CCCAUGGGUGA-CCCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA +#A1 ................................................................AAAAAA.................................................. +#A2 ................................................................123456.................................................. + +ACA7 AUUGGA-----AGACACU-CUGCG-----ACA +ACA30 CAACUG-----UCACUCA-AUGGG-----ACA +ACA5 GGAUAA-----AUUUGGU-UACAG-----ACA +ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA +#A1 .............................BBB +#A2 .............................123 + +alifold .((((((..........((((..(((((........)))))..))))..........)))))).............((((((.............((((((((..........)))).)) + ))..............)).))))......... (-53.08 = -26.63 + -26.46) +Results written to target directory /tmp/tmpstsz4a83/job_working_directory/000/4/working/mlocarna_results.