Mercurial > repos > rnateam > locarna_pairwise_p
comparison test-data/haca.snoRNA-default.stdout @ 0:c5f150d2686f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
author | rnateam |
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date | Fri, 13 Jan 2017 16:48:31 -0500 |
parents | |
children | 535f2e41d4f7 |
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-1:000000000000 | 0:c5f150d2686f |
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1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0 | |
2 Copyright Sebastian Will | |
3 | |
4 Compute pair probs ... | |
5 Compute pairwise alignments ... | |
6 Perform progressive alignment ... | |
7 | |
8 | |
9 | |
10 ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGG | |
11 ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGU | |
12 ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGC | |
13 ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCU | |
14 #A1 ............................................................ | |
15 #A2 ............................................................ | |
16 | |
17 ACA7 AGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG | |
18 ACA30 GCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG | |
19 ACA5 UGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG | |
20 ACA59 GGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA | |
21 #A1 ....AAAAAA.................................................. | |
22 #A2 ....123456.................................................. | |
23 | |
24 ACA7 AUUGGA--AGA---CACU-CUGCG-----ACA | |
25 ACA30 CAACUG--UCA---CUCA-AUGGG-----ACA | |
26 ACA5 GGAUAA--AUU---UGGU-UACAG-----ACA | |
27 ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA | |
28 #A1 .............................BBB | |
29 #A2 .............................123 | |
30 | |
31 alifold .((((((((........((((.(((((((......))))))).))))......))..))) | |
32 ))).............((((((.....((.....((((((((((((.....))))))))) | |
33 )))......)).....)).))))......... (-61.69 = -33.85 + -27.84) |