view test-data/archaea-default.stdout @ 0:c5f150d2686f draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 287021573c592fdb70fdbbc88943aa16a8740fc0
author rnateam
date Fri, 13 Jan 2017 16:48:31 -0500
parents
children 535f2e41d4f7
line wrap: on
line source

mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0
Copyright Sebastian Will

Compute pair probs ...
Compute pairwise alignments ... 
Perform progressive alignment ...



vhuU               AG-CUCACAACCGAACCC-AU------------UUGGGAGGUUGUGAGCU-
fwdB               AU-GUUGGAGGGGAACCC-GU------------AAGGGACCCUCCAAGAU-
selD               UUACGAUGUGCCGAACCCUUU------------AAGGGAGGCACAUCGAAA
hdrA               GG--CACCACUCGAAGGC--U------------AAGCCAAAGUGGUG-CU-
vhuD               GU--UCUCUCGGGAACCCGUC------------AAGGGACCGAGAGA-AC-
fruA               ---CCUCGAGGGGAACCC-GA------------AAGGGACCCGAGAGG---
fdhA               CG-CCACCCUGCGAACCCAAUAUAAAAUAAUACAAGGGAGCAG-GUGGCG-

alifold            ((.(((((((((...(((.................))).))))))))))). (-31.59 = -20.01 + -11.58)