Mercurial > repos > rnateam > mafft

comparison mafft.xml @ 8:4de39704d423 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 7f48fa9f0c2ef08ffe621a8215ea307ab780b9b5"
author bgruening
date Sat, 13 Mar 2021 22:18:32 +0000
parents aaefa93c2dd2
children 6f28e90db932
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7:aaefa93c2dd2 8:4de39704d423
225 </test> 225 </test>
226 <test expect_num_outputs="1" > 226 <test expect_num_outputs="1" >
227 <param name="inputSequences" value="sample.fa"/> 227 <param name="inputSequences" value="sample.fa"/>
228 <param name="flavourType" value="mafft-nwns"/> 228 <param name="flavourType" value="mafft-nwns"/>
229 <param name="outputFormat" value="--clustalout"/> 229 <param name="outputFormat" value="--clustalout"/>
230 <output name="outputAlignment" ftype="clustal" file="mafft_nwns_result.aln"/> 230 <output name="outputAlignment" ftype="clustal" file="mafft_nwns_result.aln" lines_diff="2" />
231 </test> 231 </test>
232 <test expect_num_outputs="1" > 232 <test expect_num_outputs="1" >
233 <param name="inputSequences" value="sample.fa"/> 233 <param name="inputSequences" value="sample.fa"/>
234 <param name="flavourType" value="custom"/> 234 <param name="flavourType" value="custom"/>
235 <param name="matrix_condition" value="BLOSUM"/> 235 <param name="matrix_condition" value="BLOSUM"/>
236 <param name="BLOSUM" value="62"/> 236 <param name="BLOSUM" value="62"/>
237 <param name="distance_method" value="--fastapair"/> 237 <param name="distance_method" value="--fastapair"/>
238 <param name="weighti" value="2.7"/> 238 <param name="weighti" value="2.7"/>
239 <param name="iterations" value="1000"/> 239 <param name="iterations" value="1000"/>
240 <param name="outputFormat" value="--clustalout"/> 240 <param name="outputFormat" value="--clustalout"/>
241 <output name="outputAlignment" ftype="clustal" file="mafft_custom_result.aln"/> 241 <output name="outputAlignment" ftype="clustal" file="mafft_custom_result.aln" lines_diff="2" />
242 </test> 242 </test>
243 </tests> 243 </tests>
244 <help> <![CDATA[ 244 <help> <![CDATA[
245 **What it does** 245 **What it does**
246 MAFFT is a multiple sequence alignment program for unix-like operating systems. 246 MAFFT is a multiple sequence alignment program for unix-like operating systems.