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comparison mafft.xml @ 4:f0606dfd5195 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 9d8962636c9b7e9370770ce343de332201ff9fe3-dirty
author rnateam
date Tue, 23 Feb 2016 07:28:36 -0500
parents a681631ccee6
children 15974dd17515
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3:a681631ccee6 4:f0606dfd5195
19 19
20 #elif $cond_flavour.flavourType == 'custom' 20 #elif $cond_flavour.flavourType == 'custom'
21 ### full parameter options 21 ### full parameter options
22 mafft 22 mafft
23 $cond_flavour.distance_method 23 $cond_flavour.distance_method
24 --ep $cond_flavour.ep
25 --retree $cond_flavour.retree 24 --retree $cond_flavour.retree
26 --maxiterate $cond_flavour.iterations 25 --maxiterate $cond_flavour.iterations
27 #end if 26 #end if
28 27
29 ## specify threads to use 28 ## specify threads to use
30 --thread \${GALAXY_SLOTS:-1} 29 --thread \${GALAXY_SLOTS:-1}
31 30
32 $datatype 31 $datatype
32 --ep $ep
33 --op $op 33 --op $op
34 $adjustdirection 34 $adjustdirection
35 35
36 #if $matrix_condition.matrix == "BLOSUM" 36 #if $matrix_condition.matrix == "BLOSUM"
37 --bl ${matrix_condition.BLOSUM} 37 --bl ${matrix_condition.BLOSUM}