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comparison test-data/seed.aln @ 18:0a507f4bd19a draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 3216eed8c66b2fff7c571ab27d3f1e6aaddc186f
author bgruening
date Mon, 14 Jul 2025 18:16:36 +0000
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17:1233363389c1 18:0a507f4bd19a
1 >PINI_ARATH/9-617
2 HVMTAMVPLYVAMILA-YGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIAANNPYAMNLRFLAADSLQK
3 VIVLSLLFLWCKLSR---NGSLDWTITLFSLSTLPNTLVMGIPLLKGMYGN-------------------FS
4 GDLMVQIVVLQCIIWYTLML------------------FLFEYRGAKLLISEQFP-DTAGSIVSIHVDSDIM
5 SLDGRQ-PLETEAEIKEDGKLHVTVRRSNASRSDIYS-----RRSQGL-SATPRPSNLTNAEIYSLQSSRNP
6 TPRGSSFNHTDFY---------------SMMASGGGRNSNFGPGEA---------------VFGSKGPTPRP
7 SNYEEDGGPAKPTAAGTAAGAGRFHYQSGGSGGGGGAHYPAPNPGMFSPNTGGGGGTAAKGNAPVVGGKRQD
8 GN------GRDLHMFVWSSSASPVSDVFGGGGGNHHADYSTATNDHQKDVKISVPQGNSNDNQYVEREEFSF
9 GNKDDDSKVLATDGGNNISNKTTQAKVMPPTSVMTRLILIMVWRKLIRNPNSYSSLFGITWSLI-SFKWNIE
10 MP------------ALIAKSISILSDAGLGMAMFSLGLFMALNPRIIACGNRRAAFA--------AAMRFVV
11 GPAVMLVASYAVGLRGV-LLHVAIIQ------------AALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIA
12 LPITLLYY
13 >Q9FVF6_POPPZ/9-609
14 HVMTAMVPLYVAMILA-YGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYNMNLRFITADSLQK
15 VIVLVVLALWTKLSK---RGCLEWTITLFSLSTLPNTLVMGIPLLKGMYGD-------------------YS
16 GSLMVQVVVLQCIIWYTLML------------------FMFEYRGAKLLISEQFP-DTAGSIVSIHVDSDIM
17 SLDGRQ-PLETEAAIKEDGKLHVTVRKSNASRSDIFS-----RRSQGLSSTTPRPSNLTNAEIYSLQSSRNP
18 TPRGSSFNHTDFY---------------SMMA--AGRNSNFGASDVY-------------GLSASRGPTPRP
19 SNFEEEHGGSNKPRFHHYHAPGGATHYPAPNPGMFSPTTAASKGVSANANNAAAAAAKKPNGQAQQKAED--
20 -----------GRDLHMFVWSSSASPVSDVFGGHDYGAHDLKDVRVAVSPGKVEGQRENQEDYNLERDDFSF
21 GNRGLDRERNSHEGEKGGFD--GKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLV-SFRWNVK
22 MP------------LIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFS--------MAVRFLT
23 GPAIMAAASIAVGIRGT-LLHIAIVQ------------AALPQGIVPFVFAKEYNVHPEILSTGVIFGMLIA
24 LPITLVYY
25 >B8AIF2_ORYSI/9-590
26 HVMTAMVPLYVAMILA-YGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQK
27 LMVLAMLTAWSHLSR---RGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGE-------------------FS
28 GSLMVQIVVLQCIIWYTLML------------------FMFEYRGARMLITEQFP-DTAANIASIVVDPDVV
29 SLDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYS-----RRSMGFSSTTPRPSNLTNAEIYSLQSSRNP
30 TPRGSSFNHTDFY---------------SMV----GRSSNFGAADA---------------FGVRTGATPRP
31 SNYEDDASKPKYPLPASNAAPMAGHYPAPNPAVSSAPKGAKKAATNGQAKGEDLHMFVWSS-----------
32 --------------------SASPVSDVFGGGAPDYNDAAAVKSPRKMDGAKDREDYVERDDFSFGNRGVMD
33 RDAEAGDEKAAAAAGADPSKAMAAPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLV-CFRWNFE
34 MP------------AIVLKSISILSDAGLGMAMFSLGLFMALQPHIIACGNKVATYA--------MAVRFLA
35 GPAVMAAASFAVGLRGT-LLHVAIVQ------------AALPQGIVPFVFAKEYSVHPSILSTAVIFGMLIA
36 LPITLVYY
37 >PIN6_ARATH/9-565
38 TVMCAMAPLYFAMFVA-YGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFISQNNPYKMDTMFILADTLSK
39 IFVFVLLSLWAVFFK---AGGLDWLITLFSIATLPNTLVMGIPLLQAMYGD-------------------YT
40 QTLMVQLVVLQCIIWYTLLL------------------FLFELRAARLLIRAEFPGQAAGSIAKIQVDDDVI
41 SLDGMD-PLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLC--------LTPRASNLSNAEIFSVN-----
42 -----TPNNRFFHGGGGSGTLQFYNGSNEIMF-CNGDLGGFGFTRPGLGASPRRLSGYASSDAYSLQPTPRA
43 SNFNELDVNGNGTPVWMKSPAAGRIYRQSSPKMMWESGQRHAAK----------------------------
44 --------------------------------------DINGSVPEKEISFRDALKAAPQATAAGGGASMEE
45 GAAGKDTTPVA-AIG-K-QE-------MPSAIVMMRLILTVVGRKLSRNPNTYSSLLGLVWSLI-SFKWNIP
46 MP------------NIVDFSIKIISDAGLGMAMFSLGLFMALQPKMIPCGAKKATMG--------MLIRFIS
47 GPLFMAGASLLVGLRGS-RLHAAIVQ------------AALPQGIVPFVFAREYNLHPDLLSTLVIFGMIVS
48 LPVTILYY
49 >YFDV_ECOLI/4-307
50 FFIGDLLPIIVIMLLG-YFSGRR-ETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLV
51 VIVGCFFFSWFGCYK-FFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGD----------------SVSTG
52 LVVAIISIIVNAITIPIGLY------------------LLNPSSGADGKK----------------------
53 ------------------------------------------------------------------------
54 ------------------------------------------------------------------------
55 ------------------------------------------------------------------------
56 ------------------------------------------------------------------------
57 ------------------------------------NSNLSALISAAKEPVVWAPVLATILVLV-GVKIP--
58 --------------AAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYN-----------TFLKLIL
59 MPLALLLVGMACHLNSE-HLQMMVLA------------GALPPAFSGIIIASRFNVYTRTGTASLAVSVLGF
60 VVTAPLWI
61 >YWKB_BACSU/5-315
62 DILILLAPIFFVIVLG-WFAGHF-GSYDAKSAKGVSTLVTKYALPAHFIAGILTTSRSEFLSQVPLMISLII
63 GIVGFYIIILLVCRF-IFKYDLTNSSVFSLNSAQPTFAFMGIPVLGSLFGA-------------------NE
64 VAIPIAVTGIVVNAILDPLA------------------IIIATVGESSKKNEESGD----------------
65 ------------------------------------------------------------------------
66 ------------------------------------------------------------------------
67 ------------------------------------------------------------------------
68 ------------------------------------------------------------------------
69 ---------------------------------SFWKMTGKSILHGLCEPLAAAPLISMILVLVFNFTLP--
70 --------------ELGVKMLDQLGSTTSGVALFAVGVTVGIRKIKLSMPAIG-----------IALLKVAV
71 QPALMFLIALAIGLPADQTTKAILL-------------VAFPGSAVAAMIATRFEKQEEETATAFVVSAILS
72 LISLPIII
73 >P71425_KLEPN/4-313
74 VIIHALAPIFVIMLLG-FWAGKA-GMVDNKNVSLLNIFVMDFALPATLFSATVQTPWAGIVAQSPLVLVLTG
75 AMWITYAAIYFLATS-VFKRTPQDGAVLTLTVALPNYAALGLPILGSVLGE------------------GAS
76 TSLSVAVSIACGSVLMTPFC------------------LLILEREKARAAGENSG-----------------
77 ------------------------------------------------------------------------
78 ------------------------------------------------------------------------
79 ------------------------------------------------------------------------
80 ------------------------------------------------------------------------
81 ---------------------------------STLAMLPVLMWRSVKKPIVWGPLLGVVLSAI-GIKMP--
82 --------------DLLLASIKPLGLAATAAALFLTGVILSARKLQLNALIAAS-----------TIVKLLV
83 QPFIAWGLVMLLGLHGSIAITAILM-------------IALAAGFFGVVFGNRFGVQSPDAEAVLLLSSVLC
84 ILSLPLFI
85 >Q98L58_RHILO/3-308
86 PLTETVLFVFSLVALG-YLAGLT-GYLRPASGEGISDFAVSVAMPLLLFQTMVKADFHG--VAPWPLWGAYF
87 TAVAITWAAGHLVTTRIFGRDARAGVVGGVSSAYSNVVLLGAPFILGIFGP-----------------SGFE
88 VLSLLVSVHLPVMMMASIVL------------------FEMFGRGGGEHV----------------------
89 ------------------------------------------------------------------------
90 ------------------------------------------------------------------------
91 ------------------------------------------------------------------------
92 ------------------------------------------------------------------------
93 ---------------------------------HPLRVLRSFLRRLFINPLIIGILLGLAWRLS-GVPLP--
94 --------------SLVMRLVDALANTAGPVALFAMGLSLRRFGVSGNVRPALA----------LSALKLFL
95 MPALVLAFVLLLGLPPL-TAKVAVVV------------AALPSGINSYLIAVQFNTGQALASNQMTIATACA
96 AVTTAFWL
97 >O67397_AQUAE/2-289
98 FIYEKVFFILLIIAFA-YTLKRG-GIFKEEHALPFINYVIYFALPFTIFKNLRF---LEIGKEVLGVVLIAW
99 GAIFLSILFAFLFGK-FLKLEEKTLRAFLLVSSFGNTAFMGYPFLYALEGN-------------------EG
100 LKYAILYDQLGSFLMVITLG----------------------------------------------------
101 ------------------------------------------------------------------------
102 ------------------------------------------------------------------------
103 ------------------------------------------------------------------------
104 ------------------------------------------------------------------------
105 ---------------------------------LFLAIGKFDLKELILFPPFIALVLSFLLHGV-RFP----
106 --------------QFFEHSVEIISGSLIPVILFSLGLRLNFTDMKSDYRTLFSA----------LFIKMFL
107 VPLLILVFLKIFGLTSL-PYRVALIE------------SAMPPMVFAGVLALKYELDFRLAFSAITLGIVIS
108 LFTVPVFR
109 >Q97M34_CLOAB/2-296
110 YVFEQIVILFLIMGIG-YYAAKS-KIIDDDTTSHLSNFIVSITLPLMILTSFNVEYSRKTVITIINLLVFSV
111 AAFIISIVIGKII---SFKFAMDKRDILMFMSIFSNCGFIGFPVLKVVYGN-------------------KG
112 VLYTSIFNLVYNVFIWTIGI------------------VIINDKREKIDY----------------------
113 ------------------------------------------------------------------------
114 ------------------------------------------------------------------------
115 ------------------------------------------------------------------------
116 ------------------------------------------------------------------------
117 -------------------------------------------KKILFNHNIIAVIVGVFLMLL-SIKIP--
118 --------------YVMSSAFNLIGSMTAPLSMIVIGSILA--------GVDFNDIFKDWSLYYIAILRLII
119 IPLIIYFALKPFQINKI-VIGVIIIC------------EAMPGGTLCPILAKSCNRNFKYASKIVLITTILS
120 MMTIPFMT
121 >YB8B_YEAST/13-413
122 LVFESVLQVVIIALAG-FWSASS-GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIAIIPIFFG
123 LTTGISFISGKIMSR-ILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPNLTWDQIPNDNRDNVASRG
124 ILYLLIFQQIGQMLRWSWGY------------------NKLMKWSGENTQHMPPSQVQSLLERTPNIDNEEL
125 VNEEQEEQELLEEENNRMNSSFLSSSSIGDKIWQKSCTVFER------------------------------
126 ------------------------------------------------------------------------
127 ------------------------------------------------------------------------
128 ------------------------------------------------------------------------
129 -------------------------------------------IRANLNPPLYSMIFAVVVAAI-GPLQREL
130 F------MEDGFINNTFAEAVTQLGSVSIPLILVVLGSNLYPSA-----EVFPKTVHHSKLLIGSIIGRMIL
131 PSCFLLPIIAIAV-----KYINVSILDDPIFLVVGFLLTVSPPAIQLTQITQLNEFFEAEMADILFWGYAVL
132 SLPVSIIV
133 >YDQ4_SCHPO/18-440
134 PIIESDLEVIVIALGG-YVLAKK-GFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSLLPVFYV
135 IISAASILISFLLAK-LFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDLLWDKIPDDTPDKVASRG
136 IMYLLIFSQLGQALRWSYGY------------------RILLSPNQPEDPLPIGNRSWSHSDVNEEEIQNLL
137 ASSANVDGVQNSVQANEGSTVQTDSSAISKNDNVQVETSNEEVGGFGAASSKISK-----------------
138 ------------------------------------------------------------------------
139 ------------------------------------------------------------------------
140 ------------------------------------------------------------------------
141 ---------------------------------------FIVLLLDFFSPPLYSLFIALFIAVV-PPLQRFF
142 F------EEGSFVEGSITSGIRMAGQVAVPMILVVLGASLATDISKTEPTQEVRKNNDTRVIIVCLLGRMVV
143 VPLALLPAFSLLS-----YFSEISTVDDPVFVVVIFLLVGSPTAIQLTQICQLNGVFERECAKVLWWSYAVF
144 TPPNSLLL
145 >PILS4_ARATH/9-407
146 ASSKPVVETLLITSVGFYLALDTVNLLGHDARKHLNNIVFYVFSPSLIGSRLADSVTYESLVKMWFMPVNVL
147 LTFMIGSLLGWIVIV-ITKPPSQLRGLIISCCASGNLGTMPLIIIPAICKE------KGGPFGDSESCEKYG
148 MGYVTLSMT--AFFISVYKHDTNWYVSGGNGLLMDLYINLMR------VLSNSPVETHTHSIESNYDDSCKV
149 QLISSK------------------------------------------EEEKEEDNHQVGRWEEVKQ-----
150 ------------------------------------------------------------------------
151 ------------------------------------------------------------------------
152 ------------------------------------------------------------------------
153 ---------------------------------RVVSLSKKVNLGSIFAPATIAAIIALVIGLI-TPLRNLI
154 IGTVAPF-------RVIQDSLTLLGDGAIPAMTLILGGNLLKGMRRSEVRSSEMKNSCIIGV---LVARYIL
155 LPVSGVLLVRGAY------KLDLVTS-EPLYQFVLLLQYAVPPAMNLGTKTQLFGAGESECSVIMLWTYSLA
156 AVSLTVWP
157 >PILS5_ARATH/9-388
158 VASMPVIQVLFMSLVGAFMASDRCKLFPVEARNSMNKVVFVLFAPALMFANLAQTVTLEDIISWWFMPVNMG
159 LTFLIGGLLGWLVVK-ILKPPPYLEGLIVATCSAGNMGNLPIILVPAICDE------DKSPFGNRSVCRTVG
160 LSYASFSMALGGFYIWTYTF------------------RLIKGSAMKVQAIEESEKIAIKSSNSDLEADHKT
161 HLLGAP-----------------------------------------EDKENKVVKEKTGFWRKGVD-----
162 ------------------------------------------------------------------------
163 ------------------------------------------------------------------------
164 ------------------------------------------------------------------------
165 ---------------------------------FLHEI-----LEELLAPPTLGAIIGFIFGAV-RWLRNLI
166 IGDDAPL-------RIVQSTAKLLGDGTIPCMTIILGGNLIQG-----LRSSAVKPMVVLGI---VCVRYIA
167 MPIIGIGIVLTAA------NLGFLPA-DPLFQYVLMLQFTLPPAMNIGTMTQLYNVAQDECSVLMLWTYLVA
168 ILALTVWS
169 >PILS2_ARATH/18-441
170 SGVVPLLKLICLTVIGLLLAHPKTQLVPRATFRLLSKLVFALFLPCLIFTELGESITLDNIVQWWFIPVNVL
171 LSAVVGSLIGYLVVL-ICRPPPEFNRFTIVMTAFGNTGNLLLAIVSSVCHT--------KTNPFGPNCNSRG
172 VSYVSFAQWVAVILVYTVVY------------------HMMEPPLEYYEVVEEEG-VEIEEINVENHDASRP
173 LLVEAEWPGIEDKETEHCKTPFIARVFNSISSFSQTSFPEVDLGGEYGGESSSPRSIQCLAEPRVMR-----
174 ------------------------------------------------------------------------
175 ------------------------------------------------------------------------
176 ------------------------------------------------------------------------
177 ---------------------------------RIRVVAEQTPVKHILQPPTIASLLAIIIGSV-PQLKSVV
178 FGYDAPL-------SFITDSLNIMGSAMVPSVMLVLGGMLSEGPNESTLGLRTTIGI--------SVARLLV
179 LPLVGIGIVMSAD------KLGLISSADPMFKFVLLLQYSTPSAILLGAIASLRGYAVREASALLFWQHIFA
180 LLSLTFYI
181 >PILS6_ARATH/30-423
182 IAVMPIAKVFTMCFLGLLMASKYVNILPPSGRKLLNGLVFSLLLPCLIFSQLGQAVTLQKMLQWWFIPVNVV
183 LGTISGSIIGFIVAS-IVRPPYPYFKFTIIQIGVGNIGNVPLVLLAALCRD------TSNPFGDSEKCSIDG
184 TAYISFGQWVGAIILYTYVY------------------QMFAPPPEGFDAEEENLALKTLPVDAAPEQVPLL
185 TQNFPKDFSPTQDL--------------------------------LPVQSTEPRGRGVSRKGKIAQ-----
186 ------------------------------------------------------------------------
187 ------------------------------------------------------------------------
188 ------------------------------------------------------------------------
189 ---------------------------------IFVFLYEKLKLKQIVQPAIVASILAMILGAI-PFTKKLI
190 FTNGAPL-------FFFTDSCMILGDAMIPCILLALGGNLINGPGSSKLGFKTTAAI--------IIGRLVL
191 VPPVGLGIVTVAD------KLGFLPADDKMFRFVLLLQHTMPTSVLSGAVANLRGCG-RESAAVLFWVHIFA
192 IFSMAGWM
193 >PIN4_ARATH/9-611
194 TVLTAVVPLYVAMILA-YGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFVAADTLQK
195 IIMLVLLALWANLTK---NGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGT-------------------YA
196 GSLMVQVVVLQCIIWYTLLL------------------FLFEYRGAKLLIMEQFP-ETGASIVSFKVESDVV
197 SLDGHD-FLETDAEIGNDGKLHVTVRKSNASRRSLMM--------------TPRPSNLTGAEIYSLS----S
198 TPRGSNFNHSDFY---------------SVMGFPGGRLSNFGPADLY-------------SVQSSRGPTPRP
199 SNFEENNAVKYGFYNNTNSSVPAAGSYPAPNPEFSTGTGVSTKPNKIPKENQQQLQEKDSKASHDAKELHMF
200 VWSSSASPVSDVFGGGAGDNVATEQSEQGAKEIRMVVSDQPRKSNARGGGDDIGGLDSGEGEREIEKATAGL
201 NKMGSNSTAELEAAG-G-DGGGNNGTHMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWALV-AYRWHVA
202 MP------------KILQQSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFA--------MAVRFIT
203 GPAIMAVAGIAIGLHGD-LLRIAIVQ------------AALPQGIVPFVFAKEYNVHPTILSTGVIFGMLIA
204 LPITLVYY
205 >PIN7_ARATH/9-614
206 TVLTAVIPLYVAMILA-YGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK
207 LIMLTLLIIWANFTR---SGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGE-------------------YS
208 GSLMVQIVVLQCIIWYTLLL------------------FLFEYRGAKILIMEQFP-ETGASIVSFKVESDVV
209 SLDGHD-FLETDAQIGDDGKLHVTVRKSNASRRSFYG--------GGGTNMTPRPSNLTGAEIYSL----NT
210 TPRGSNFNHSDFY---------------SMMGFPGGRLSNFGPADMY-------------SVQSSRGPTPRP
211 SNFEESCAMASSPRFGYYPGGAPGSYPAPNPEFSTGNKTGSKAPKENHHHVGKSNSNDAKELHMFVWGSNGS
212 PV-----SDRAGLQVDNGANEQVGKSDQGGAKEIRMLISDHTQNGENKAGPMNGDYGGEEESERVKEVPNGL
213 HKLRCNSTAELNPKEAIETGETVPVKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALV-AFRWDVA
214 MP------------KIIQQSISILSDAGLGMAMFSLGLFMALQPKLIACGNSTATFA--------MAVRFFT
215 GPAVMAVAAMAIGLRGD-LLRVAIVQ------------AALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIA
216 LPITLVYY