Mercurial > repos > rnateam > mafft
diff test-data/mafft_custom_result.aln @ 7:aaefa93c2dd2 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit eff9db2cd18c82a7de37851571b8989b48014c71"
| author | rnateam |
|---|---|
| date | Wed, 15 Apr 2020 15:33:37 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mafft_custom_result.aln Wed Apr 15 15:33:37 2020 -0400 @@ -0,0 +1,458 @@ +CLUSTAL format alignment by MAFFT F-INS-i (v7.455) + + +1== MN------------------------GTE--GDNFYVPFS--------NKTGL-ARSPYE +2== MN------------------------GTE--GPNFYVPFS--------NITGV-VRSPFE +3== MN------------------------GTE--GINFYVPMS--------NKTGV-VRSPFE +4=p MN------------------------GTE--GKNFYVPMS--------NRTGL-VRSPFE +5=p MN------------------------GTE--GNNFYVPLS--------NRTGL-VRSPFE +6== MK------------------------QVPEFHEDFYIPIP-------LDINNLSAYSPFL +7== MR------------------------KMS--EEEFYL------------FKNISSVGPWD +8=opsin, ------------------------------------------------------------ +9== MAQQWSLQ-RLAGRHPQDS----YEDSTQ--SSIFTYTNS--------NS----TRGPFE +10== MAQQWSLQ-RLAGRHPQDS----YEDSTQ--SSIFTYTNS--------NS----TRGPFE +11== MTEAWNVAVFAARRSRDD------DDTTR--GSVFTYTNT--------NN----TRGPFE +12== MA-AWEAA-FAARRRHEE------EDTTR--DSVFTYTNS--------NN----TRGPFE +13== MS----------------------SNSSQ--------------AP--PNG----TPGPFD +14== MESG-NV-----------------------------------------SSSLFGNVSTAL +15== MEYH-NV------------------------------------------SSVLGNVSSVL +16== MEPLCNA------------------------------------------------SEPPL +17== MDALCNA------------------------------------------------SEPPL +18== MT-------------------------------------------------------NAT +19== MA-------------------------------------------------------NVT +20== ME-------------------------------------------------SFAVAAAQL +21== ME-------------------------------------------------SFAVAAAQL +22== MD-------------------------------------------------SFAAVATQL +23== MERS--------------------------------------------HLPETPFDLAHS +24== MERS--------------------------------------------LLPEPPLAMALL +25== MI-------------------------------------------------------AVS +26== M----------------------------------------------------------- +27== MVESTT------------------------------------------------------ +28== MGRD-------------------------------------------------------- +29== MM-----DVNSSGRPDLYGH-----------LRSFLLPEVGRGLPDLSPDGGADPVAGSW +30== M----------------------------------------------------------- +31=p M----------------------------------------------------------- +32== MD------VLSPGQ----------------------------------GNNTTSPPAPFE +33=p MD------VFSFGQ----------------------------------GNNTTASQEPFG +34== MA------NFTFGDLALDVARMGGLASTPS------------------GLRSTGLTTPGL +35=p MA------NFTFGDLALDVARMGGLASTPS------------------GLRSTGLTTPGL +36== ME-------GAEGQEELD-------------WEALYLRL---------PLQNCSWNSTGW + + +1== YP---------------------------------------------------------- +2== QP---------------------------------------------------------- +3== YP---------------------------------------------------------- +4=p YP---------------------------------------------------------- +5=p YP---------------------------------------------------------- +6== VP---------------------------------------------------------- +7== GP---------------------------------------------------------- +8=opsin, ------------------------------------------------------------ +9== GP---------------------------------------------------------- +10== GP---------------------------------------------------------- +11== GP---------------------------------------------------------- +12== GP---------------------------------------------------------- +13== GP---------------------------------------------------------- +14== RPEARL----------------------SAETRLLGWNVPPEELRHIPEHWL-------- +15== RPDARL----------------------SAESRLLGWNVPPDELRHIPEHWL-------- +16== RPEAR-SSG-------------------NGDLQFLGWNVPPDQIQYIPEHWL-------- +17== RPEARMSSG-------------------SDELQFLGWNVPPDQIQYIPEHWL-------- +18== GPQMAYYGAASMDFG-------------YPEGVSIVDFVRPEIKPYVHQHWY-------- +19== GPQMAFYGSGAATFG-------------YPEGMTVADFVPDRVKHMVLDHWY-------- +20== GPHFAPLS-----------------------NGSVVDKVTPDMAHLISPYWN-------- +21== GPHFAPLS-----------------------NGSVVDKVTPDMAHLISPYWN-------- +22== GPQFAAPS-----------------------NGSVVDKVTPDMAHLISPYWD-------- +23== GPRFQAQSSG---------------------NGSVLDNVLPDMAHLVNPYWS-------- +24== GPRFEAQTGG---------------------NRSVLDNVLPDMAPLVNPHWS-------- +25== GPSYEAFSYG--GQA-------------RFNNQTVVDKVPPDMLHLIDANWY-------- +26== -ANQLSYSSL--GWP-------------YQPNASVVDTMPKEMLYMIHEHWY-------- +27== ----------LVNQT-------------WWYNPTV----------DIHPHWA-------- +28== ---------LRDNET-------------WWYNPSI----------VVHPHWR-------- +29== APHLLS-----------------------------------EVTASPAPTWDAPPDNASG +30== -PHLLSGF--------------------------------LEVTASPAPTWDAPPDNVSG +31=p -PHLLSGF--------------------------------LEVTASPAPTWDAPPDNVSG +32== TG--------------------------------------GNTTGI-------------- +33=p TG--------------------------------------GNVTSI-------------- +34== SPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTD--DRYWSL------- +35=p SPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTD--DRYWSL------- +36== EPNW-------------------------------------NVTVVPNTTWWQ------- + + +1== -----QY-YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAM +2== -----QY-YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAV +3== -----QY-YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAV +4=p -----QY-YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAV +5=p -----QY-YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAV +6== -----QD-HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSI +7== -----QY-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF +8=opsin, ------------------------------------------------------------ +9== -----NY-HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAV +10== -----NY-HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAV +11== -----NY-HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAF +12== -----NY-HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAV +13== -----QWPYQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAV +14== -----TY-PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAF +15== -----IY-PEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAF +16== -----TQ-LEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAV +17== -----TQ-LEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAV +18== -----NY-PPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLAL +19== -----NY-PPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLAL +20== -----QF-PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI +21== -----QF-PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI +22== -----QF-PAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI +23== -----RF-APMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAF +24== -----RF-APMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAF +25== -----QY-PPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAI +26== -----AF-PPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAF +27== -----KF-DPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAM +28== -----EF-DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAF +29== CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLAL +30== CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLAL +31=p CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLAL +32== SDVTVSY--------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAV +33=p SDVTFSY--------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAV +34== TVYSHEH--------LVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAV +35=p TVYSHEH--------LVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAV +36== --ASAPFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAV + + +1== ANLFMVLFG-FTVTMYTSMNG-YFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYI +2== ADLFMVFGG-FTTTLYTSLHG-YFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYV +3== ADLFMACFG-FTVTFYTAWNG-YFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYI +4=p AGTIMVCFG-FTVTFYTAING-YFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYI +5=p AGAIMVCFG-FTVTFYTAING-YFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYI +6== ANLFVAIFG-SPLSFYSFFNR-YFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWL +7== GGFLLCIFS-VFPVFVASCNG-YFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYI +8=opsin, -DLAETVIA-STISIVNQVSG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWL +9== ADLAETVIA-STISVVNQVYG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWM +10== ADLAETVIA-STISIVNQVSG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWL +11== VDLVETLVA-STISVFNQIFG-YFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWF +12== ADLGETVIA-STISVINQISG-YFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWF +13== ADLLVTLCG-SSVSLSNNING-FFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYV +14== CDFMMMVK--TPIFIYNSFHQ-GYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFN +15== CDFMMMIK--TPIFIYNSFHQ-GYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYN +16== FDLIMCLK--APIF--NSFHR-GFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYN +17== FDLIMCLK--APIFIYNSFHR-GFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYN +18== SDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYN +19== SDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYN +20== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ +21== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ +22== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ +23== SDFCMMASQ-SPVMIINFYYE-TWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYN +24== SDFCMMASQ-SPVMIINFYYE-TWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYN +25== SNFLMMFCM-SPPMVINCYYE-TWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYN +26== SDFCMMAFM-MPTMTSNCFAE-TWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYN +27== SDLSFSAINGFPLKTISAFMK-KWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYN +28== SDFTFSLVNGFPLMTISCFLK-KWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYN +29== ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL +30== ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL +31=p ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL +32== TDLMVSVLV-LPMAALYQVLN-KWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYW +33=p TDLMVSVLV-LPMAALYQVLN-KWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYW +34== ADLMVAVLV-MPLSVVSEISK-VWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYW +35=p ADLMVAVLV-MPLSVVSEISK-VWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYW +36== ADLLVACLV-MPLGAVYEVVQ-RWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYW + . : : * : : :*: + +1== VICKPMGNFR-FGNTHAIMGVAFTWIMALACA-APPLV-GWSRYIPEGMQCSCGPDYYTL +2== VVCKPMSNFR-FGENHAIMGVAFTWVMALACA-APPLV-GWSRYIPEGMQCSCGIDYYTL +3== VVCKPMGNFR-FSATHAMMGIAFTWVMAFSCA-APPLF-GWSRYMPEGMQCSCGPDYYTH +4=p VVCKPMGSFK-FSSSHAFAGIAFTWVMALACA-APPLF-GWSRYIPEGMQCSCGPDYYTL +5=p VVCKPMGSFK-FSSTHASAGIAFTWVMAMACA-APPLV-GWSRYIPEGIQCSCGPDYYTL +6== VICKPLGNFT-FKTPHAIAGCILPWISALAAS-LPPLF-GWSRYIPEGLQCSCGPDWYTT +7== VICKPFGNFR-FSSKHALTVVLATWTIGIGVS-IPPFF-GWSRFIPEGLQCSCGPDWYTV +8=opsin, VVCKPFGNVR-FDAKLAIVGIAFSWIWAAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG +9== VVCKPFGNVR-FDAKLAIVGIAFSWIWAAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG +10== VVCKPFGNVR-FDAKLAIVGIAFSWIWSAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG +11== VVCKPFGNIK-FDSKLAIIGIVFSWVWAWGWS-APPIF-GWSRYWPHGLKTSCGPDVFSG +12== VVCKPFGNIK-FDGKLAVAGILFSWLWSCAWT-APPIF-GWSRYWPHGLKTSCGPDVFSG +13== VVCKPLGDFQ-FQRRHAVSGCAFTWGWALLWS-APPLL-GWSSYVPEGLRTSCGPNWYTG +14== VITRPMEGK--MTHGKAIAMIIFIYMYATPWV-VACYTETWGRFVPEGYLTSCTFDYLTD +15== VITRPMEGK--MTHGKAIAMIIFIYLYATPWV-VACYTESWGRFVPEGYLTSCTFDYLTD +16== VITKPMNRN--MTFTKAVIMNIIIWLYCTPWV-VLPLTQFWDRFVPEGYLTSCSFDYLSD +17== VITKPMNRN--MTFTKAVIMNIIIWLYCTPWV-VLPLTQFWDRFVPEGYLTSCSFDYLSD +18== IICNGFNGPK-LTTGKAVVFALISWVIAIGCA-LPPFF-GWGNYILEGILDSCSYDYLTQ +19== IICNGFNGPK-LTQGKATFMCGLAWVISVGWS-LPPFF-GWGSYTLEGILDSCSYDYFTR +20== VIVKGMAGRP-MTIPLALGKM----------------------YVPEGNLTSCGIDYLER +21== VIVKGMAGRP-MTIPLALGKIAYIWFMSSIWC-LAPAF-GWSRYVPEGNLTSCGIDYLER +22== VIVKGMAGRP-MTIPLALGKIAYIWFMSTIWCCLAPVF-GWSRYVPEGNLTSCGIDYLER +23== VIVKGINGTP-MTIKTSIMKILFIWMMAVFWT-VMPLI-GWSAYVPEGNLTACSIDYMTR +24== VIVKGINGTP-MTIKTSIMKIAFIWMMAVFWT-IMPLI-GWSSYVPEGNLTACSIDYMTR +25== VIVKGLSGKP-LSINGALIRIIAIWLFSLGWT-IAPMF-GWNRYVPEGNMTACGTDYFNR +26== VIVRGMAAAP-LTHKKATLLLLFVWIWSGGWT-ILPFF-GWSRYVPEGNLTSCTVDYLTK +27== VIGRPMAASKKMSHRRAFLMIIFVWMWSIVWS-VGPVF-NWGAYVPEGILTSCSFDYLST +28== VIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA-IGPIF-GWGAYTLEGVLCNCSFDYISR +29== GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ +30== GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ +31=p GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ +32== AITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPML-GWRTPEDRSDPDAC---TISK +33=p AITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPML-GWRTPEDRSDPDAC---TISK +34== AVTS-IDYIRRRSARRILLMIMVVWIVALFIS-IPPLF-GWRD--PNNDPDKTGTCIISQ +35=p AVTS-IDYIRRRSARRILLMIMVVWIVALFIS-IPPLF-GWRD--PNNDPDKTGTCIISQ +36== AVTN-IDYIHASTAKRVGMMIACVWTVSFFVC-IAQLL-GWKDPDWNQRVSEDLRCVVSQ + : : + +1== NPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQE--------------- +2== KPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQE--------------- +3== NPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQE--------------- +4=p NPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQD--------------- +5=p NPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQD--------------- +6== NNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQAD--------------- +7== GTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQE--------------- +8=opsin, SSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKE--------------- +9== SSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKE--------------- +10== SSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKE--------------- +11== SVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKE--------------- +12== SSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKE--------------- +13== GS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKE--------------- +14== NF--DTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNV- +15== NF--DTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDSLRSNV- +16== NF--DTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNV- +17== NF--DTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVESLRSNV- +18== DF--NTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVSTLRSN-- +19== DM--NTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTNLRSN-- +20== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- +21== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- +22== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- +23== MW--NPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSS-- +24== QW--NPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKSLRSS-- +25== GL--LSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSS-- +26== DW--SSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVASLRANA- +27== DP--STRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA-- +28== DS--TTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA-- +29== D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- +30== D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- +31=p D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- +32== D-----HGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASP +33=p D-----HGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSS +34== D-----KGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV +35=p D-----KGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV +36== D-----VGYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGA-------TARGGVG + * : * : + +1== ------------------------------------------------------------ +2== ------------------------------------------------------------ +3== ------------------------------------------------------------ +4=p ------------------------------------------------------------ +5=p ------------------------------------------------------------ +6== ------------------------------------------------------------ +7== ------------------------------------------------------------ +8=opsin, ------------------------------------------------------------ +9== ------------------------------------------------------------ +10== ------------------------------------------------------------ +11== ------------------------------------------------------------ +12== ------------------------------------------------------------ +13== ------------------------------------------------------------ +14== ------------------------------------------------------------ +15== ------------------------------------------------------------ +16== ------------------------------------------------------------ +17== ------------------------------------------------------------ +18== ------------------------------------------------------------ +19== ------------------------------------------------------------ +20== ------------------------------------------------------------ +21== ------------------------------------------------------------ +22== ------------------------------------------------------------ +23== ------------------------------------------------------------ +24== ------------------------------------------------------------ +25== ------------------------------------------------------------ +26== ------------------------------------------------------------ +27== ------------------------------------------------------------ +28== ------------------------------------------------------------ +29== GFPRVE--------------------------------PDSVI----------ALNGIVK +30== GFPRVQ--------------------------------PESVI----------SLNGVVK +31=p GFPRVQ--------------------------------PESVI----------SLNGVVK +32== A-PQPKKS-VNGESGSRNWRLGVESKAGGAL-----C-----------------ANGAVR +33=p A-PPPKKS-LNGQPGSGDWRRCAENRAVGTP-----C-----------------TNGAVR +34== ASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGV-- +35=p ASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGV-- +36== PPPVPAGGALVAGGGSGGIAAAVVAVIGR---------PLPTISET-------TTTGFTN + + +1== ------------------------------------------------------------ +2== ------------------------------------------------------------ +3== ------------------------------------------------------------ +4=p ------------------------------------------------------------ +5=p ------------------------------------------------------------ +6== ------------------------------------------------------------ +7== ------------------------------------------------------------ +8=opsin, ------------------------------------------------------------ +9== ------------------------------------------------------------ +10== ------------------------------------------------------------ +11== ------------------------------------------------------------ +12== ------------------------------------------------------------ +13== ------------------------------------------------------------ +14== ------------------------------------------------------------ +15== ------------------------------------------------------------ +16== ------------------------------------------------------------ +17== ------------------------------------------------------------ +18== ------------------------------------------------------------ +19== ------------------------------------------------------------ +20== ------------------------------------------------------------ +21== ------------------------------------------------------------ +22== ------------------------------------------------------------ +23== ------------------------------------------------------------ +24== ------------------------------------------------------------ +25== ------------------------------------------------------------ +26== ------------------------------------------------------------ +27== ------------------------------------------------------------ +28== ------------------------------------------------------------ +29== -------------LQKEVEEC-AN------------------LSRLLKHER--------- +30== -------------LQKEVEEC-AN------------------LSRLLKHER--------- +31=p -------------LQKEVEEC-AN------------------LSRLLKHER--------- +32== QGDDGAALEV-----IEVHRV-GNSKEHLPLPSEAGP--TPCAPASFERKNERN------ +33=p QGDDEATLEV-----IEVHRV-GNSKEHLPLPSESGS--NSYAPACLERKNERN------ +34== -NSNSSSSERLKQIQIETAEAFANGC------------AEEASIAMLERQCNNGKKISSN +35=p -NSNSSSSERLKQIQIETAEAFANGC------------AEEASIAMLERQCNNGKKISSN +36== VSSNNTSP--------EKQSC-ANGLEADPPTTGYGAVAAAYYPSLVRRKP--------- + + +1== --------SASTQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT--HQGSDFGAT-FM +2== --------SATTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT--HQGSNFGPI-FM +3== --------SATTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT--NKGADFTAT-LM +4=p --------SASTQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF--NKGADFSAK-FM +5=p --------SASTQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF--NKGAAFSAQ-FM +6== --------SASTQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS--HRGEEFDLR-MA +7== --------SATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN--NRNHGLDLR-LV +8=opsin, --------SESTQKAEKEVTRMVVVMVLAFC----------------------------- +9== --------SESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA--NPGYPFHPL-MA +10== --------SESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA--NPGYAFHPL-MA +11== --------SESTQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA--NPGYAFHPL-AA +12== --------SESTQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA--NPGYAFHPL-AA +13== --------ADTTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT--HKGIIIQPV-LA +14== --------DKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF--GDKTLLTPG-AT +15== --------DKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF--GDKTLLTPG-AT +16== --------DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSLLTQG-AT +17== --------DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSLLTPG-AT +18== --------EADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM--GDTSGITPL-VS +19== --------EAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL--GNAEGITPL-LT +20== --------EDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT +21== --------EDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT +22== --------EDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT +23== --------EDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF--KI-DGLTPL-TT +24== --------EDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF--KI-DGLTPL-TT +25== --------ENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF--NL-VKISPL-FT +26== --------DQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF--SSGTRLTPL-AT +27== --------Q-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF--GPAEWVTPY-AA +28== --------Q-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF--GPLEWVTPY-AA +29== -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE +30== -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE +31=p -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE +32== ----AEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCHMPTL-LG +33=p ----AEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCHMPAL-LG +34== DTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF--VDPEGIPPF-AR +35=p DTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF--VDPEGIPPF-AR +36== -------KEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-CD--CEVSPV-LT + * . : + +1== TLPAFFAKSSALYNPVIYILMNKQFRNCMITTL-----CC-----GKNPLGDDE-SGA-S +2== TLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL-----CC-----GKNPLGDDE-ASA-T +3== AVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI-----CC-----GKNPFGDEDVSSTVS +4=p AIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI-----FC-----GKNPLGDDE-SSTVS +5=p AIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL-----FC-----GKNPLGDEE-SSTVS +6== TIPSCLSKASTVYNPVIYVLMNKQFRSCMMK-M-----VC-----GKN-IEEDE-AST-S +7== TIPSFFSKSACIYNPIIYCFMNKQFQACIMK-M-----VC-----GKA-MTDES-DTC-S +8=opsin, ------------------------------------------------------------ +9== ALPAFFAKSATIYNPVIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-ELS-S +10== ALPAYFAKSATIYNPVIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-ELS-S +11== ALPAYFAKSATIYNPVIYVFMNRQFRNCIMQ-L-----F------GKK-VDDGS-EAS-T +12== ALPAYFAKSATIYNPIIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-EVS-T +13== SLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML-----CC-----GYQPQRTGKASPGTP +14== MIPACACKMVACIDPFVYAISHPRYRMELQKRCPW---LALN---EK----APE-SSA-V +15== MIPACTCKMVACIDPFVYAISHPRYRMELQKRCPW---LAIS---EK----APE-SRA-A +16== MIPACTCKLVACIDPFVYAISHPRYRLELQKRCPW---LGVN---EK----SGE-ISS-A +17== MIPACTCKLVACIEPFVYAISHPRYRMELQKRCPW---LGVN---EK----SGE-ASS-A +18== TLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPW---FCVH---ET----ETK-SND-D +19== TLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPW---FCVH---EK----DPN-DVE-E +20== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSD-A +21== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSD-A +22== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSE-A +23== IWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCP----MCVF---GNT--DEPK-PDA-P +24== IWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCP----MCVC---GTT--DEPK-PDA-P +25== IWGSLFAKANAVYNPIVYGISHPKYRAALFAKFP----SLAC---AA----EPS-SDA-V +26== IWGSVFAKANSCYNPIVYGISHPRYKAALYQRFP----SLAC---GS---GESG-SDV-K +27== ELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQF---DEK--ECED-AND-A +28== QLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQF---DDK--ETED-DKD-A +29== RTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----QCQYRNINRKL------SAAGM +30== RTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL-----QCQYRNINRKL------SAAGM +31=p RTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----QCQYRNINRKL------SAAGM +32== AIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----KCKF---CRQ------------ +33=p AIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----KCKF---CRR------------ +34== SFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYR-RGHR------------ +35=p SFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYR-RGHR------------ +36== SLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL------CGRRVRRRR------------ + + +1== TSKTEVSSVSTS------------------------------------------------ +2== ASKTETSQVA-------------------------------------------------- +3== QSKTEVSSVSSS------------------------------------------------ +4=p TSKTEVSSVS-------------------------------------------------- +5=p TSKTEVSSVS-------------------------------------------------- +6== SQVTQVSSVA-------------------------------------------------- +7== SQKTEVSTVSST------------------------------------------------ +8=opsin, ------------------------------------------------------------ +9== ASKTEVSSVS-------------------------------------------------- +10== ASKTEVSSVS-------------------------------------------------- +11== TSRTEVSSVSNS------------------------------------------------ +12== -SRTEVSSVSNS------------------------------------------------ +13== GPHADVTAAGLR------------------------------------------------ +14== ASTS-TTQEPQ------------------------------------------------- +15== ISTS-TTQEQQ------------------------------------------------- +16== QSTT-TQEQ-Q------------------------------------------------- +17== QSTT-TQEQTQ------------------------------------------------- +18== SQSNSTVAQDK------------------------------------------------- +19== NQSSNTQTQEK------------------------------------------------- +20== QSQA-TASEAE------------------------------------------------- +21== QSQA-TASEAE------------------------------------------------- +22== QSQA-TTSEAE------------------------------------------------- +23== ASDTETTSEAD------------------------------------------------- +24== PSDTETTSEAE------------------------------------------------- +25== STTSGTTTVTDN------------------------------------------------ +26== SEASATTTMEEK------------------------------------------------ +27== EEEV-VASERG--GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGA +28== ETEI-PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQG- +29== HEALKLAERPERP-----------------EFVLQNA----------------------- +30== HEALKLAERPERS-----------------EFVLQNS----------------------- +31=p HEALKLAERPERS-----------------EFVLQNS----------------------- +32== ------------------------------------------------------------ +33=p ------------------------------------------------------------ +34== ------------------------------------------------------------ +35=p ------------------------------------------------------------ +36== ------------------------------------------------------------ + + +1== --------------------------------------------PVSP-A--- +2== -----------------------------------------------P-A--- +3== --------------------------------------------QVSP-A--- +4=p -----------------------------------------------P-A--- +5=p -----------------------------------------------P-A--- +6== -----------------------------------------------PEK--- +7== --------------------------------------------QVGP-N--- +8=opsin, ----------------------------------------------------- +9== --------------------------------------------SVSP-A--- +10== --------------------------------------------SVSP-A--- +11== --------------------------------------------SVAP-A--- +12== --------------------------------------------SVSP-A--- +13== -------------------------------------------NKVMP-AHPV +14== --------------------------------------------QTTA-A--- +15== --------------------------------------------QTTA-A--- +16== --------------------------------------------QTTA-A--- +17== --------------------------------------------QTSA-A--- +18== -------------------------------------------------A--- +19== -------------------------------------------------S--- +20== ----------------------------------------------SK-A--- +21== ----------------------------------------------SK-A--- +22== ----------------------------------------------SK-A--- +23== ----------------------------------------------SK-A--- +24== ----------------------------------------------SK-D--- +25== -------------------------------------------EK-SN-A--- +26== -------------------------------------------PKIPE-A--- +27== YPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQ-A--- +28== YPP-QGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQ-A--- +29== -------------------------------------------DYCRKKGHDS +30== -------------------------------------------DHCGKKGHDT +31=p -------------------------------------------DHCGKKGHDT +32== ----------------------------------------------------- +33=p ----------------------------------------------------- +34== ----------------------------------------------------- +35=p ----------------------------------------------------- +36== -------------------------------------------------A-PQ +