Mercurial > repos > rnateam > mafft

diff test-data/amino_withU.fa @ 17:1233363389c1 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 16082a6848975215c251a4440c7c3c359fc7d34c
author bgruening
date Wed, 05 Mar 2025 16:46:36 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/amino_withU.fa	Wed Mar 05 16:46:36 2025 +0000
@@ -0,0 +1,56 @@
+>CALJE_DJ01Gene08198
+MDRVKNQNEDLLSGVVPLMKLLCLTVIGLVLAHPKIQIVPRATFKLLSKLVFALFLPCLI
+FVHLGESVTLNSVLLWWFVPVNVLISTAIGCALGYIVAIICRPPPQFYRFAVIMTGFGNT
+GNLPIAIVGSVCHSSENPFGPDCHRTGVAYVSFAQWVAVILVYTLVYHMMEPPMQYYEIV
+SEENEIQEETVNNISRPLLHEAEWPGMVDKETVHSKTPFIARVFMSISGSSQNTFPDLDL
+TEDGGAGPSSPKSLRCLAEPKVVRRIRIVAEETPIRHILQPPTIASLLALIVGMVPLFRD
+FVFGTDAPLSFFTDSLEILAGAVVPSVMLILGGMLAEGPNDSALGTRTMIGITVARLLVL
+PLVGIGVVALADKLNFLVEGDQMYRFVLLLQYTTPSAILLGAIASLRVMLSRKLRHSCSG
+STSVQUSSNSICNLLILLHSLADEDVGASQSGELIKGTDATRHQLFPGKDAGFAREQRHG
+FHAAEVFIAPCSQKEEKMLFEARRLVRWGFHEPHGPRHAAFQPWPDLSRARKHCLAPEAG
+VDSIAKSAHRSHFSAFSPTP
+>CALJE_DJ01Gene07324
+MHQKRDIDPADLWLPYSFRSSNMISLATVYHVLEATVPLYAAMMLAYLSIKWWKLFTPDQ
+CTGINKFVAKFSVPLLSFHVISTNNPYQMNLKLLFSDSMQKILALLFFAVISKACFRGSL
+DWLITGFSLSTLPNTLIVGIPLLKDLYGDEAAKLLGQIIVLQSLVWYTLLLFLFEFRVAK
+AVAANRNDNTGELEASGGMQPKPEEDEAKTLSMRSIKSLLMKSLLILCMVGKKLMINPNT
+YASLAGFVWALISFRWGIELPLMIRSCISILSDGGLGMAMFSLGLFTASQSSIIACGTRM
+MVLSMGLRFIVGPALIAIPSYAIGMRATLLKVAIVQAALPQGIVPWVFAKEYGVQPDILS
+TGVIIGMIIAVPIALAYYSILDHN
+>CALJE_DJ01Gene04286
+MITWHDLYTVLTAVVPLYVAMILAYGSVRWWRIFSPDQCSGINRFVAIFAVPLLSFHFIS
+TNNPYTMNFRFIAADTLQKLIVLSALAAWARLSSRGSLDWAITVFSLATLPNTLVMGIPL
+LIAMYGSFSGSLMVQIVVLQCIIWYTLLLFLFEYRAARLLIADQFPDTAASIVSFRVDSD
+VVSLDGGRDLLQADAEVGGDGKIHVTVRRSNASRRSVSMAMTPRPSNLTGAEIYSLSSSR
+NPTPRGSNFNHSDFFAMVGGAPPPLRPSNFGPADLYSLHSSRGPTPRPSNFDDGAAVGSP
+RFVHYPAPNPEISASAPVTKKPTPTNPAPPSTAAATQQQNRAAHHDAKELHMFVWSSSAS
+PVSEVGGLHVFGGADFAAPDLAGRPDHGGAKEIRMLIPTDLPQNGGTKGVAIPEGEDYGG
+GGEDFSFGGGKGLEDLVGRDKENGPEGLSKLGSSSTAELHPKGGGGPSDGAKQAHPQMPP
+ASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVAFRWHVTMPKIVEKSISILSDAGLGM
+AMFSLGLFMALQPKIIACGNSVATFAMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAA
+LPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLVYYIILGL
+>CALJE_DJ01Gene08527
+MISLVIVYHVLEATVPLYAAMILAYLSVKWWKLFTPDQCTGINNFVAKFSVPLLSFHVIS
+PNNPYPINLKLLFSDSVQKILALLVFAVLSRPCFRGSLDWLITGFSTSTLPNTLIIGIPL
+LKGLYGDEAVKLLGQIIVLQSLVWNTLLLFLFEVRAAKAVAANPTDNTGELESSGGIQPK
+PEEDEVKCLLAGFIWALILFRWEVELPLIISKCISILSDGGLGMAMFSLGLFMASQSSII
+ASGTWMMVLSMGLRFIIGPALIAIPSYAIGLRATLLKVAIVQAALPQGIVPFVFAKEYSV
+HPDILSTGFKLDQGFLLADERAIEKIDAVELRENPDNEMGRSPESRRKGAVIVPIISDAI
+GADAGGGLFQAVSSAFRRPHC
+>CALJE_DJ01Gene19453
+MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS
+TNNPYAMNYHFIGADSLQKVVILFALFLWHNLSKRGNLDWTITLFSLSTLPNTLVMGIPL
+LRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQFPPDIAGSITSFRVDS
+DVVSLNGREPLQADAEIRQDGKLHVVVRRSTSSAARSMSSSYNKSHGLNSITSMTPRASN
+LTGVEIYSLQSSREPTPRASSFNQTDFYAMFSSKVTSPRPDPSKPALHQDIPAPKGLHAP
+SGNASPIRKAGTNGDLEIEDGCKSQEGKFPASPFVAQKKGTDTGGVAGLVENNHRMPPAS
+VMTRLILIMVWRKLIRNPNTYSSLLGLVWSLVSFRWNIEMPTIIKGSISILSDAGLGMAM
+FSLGLFMALQPKIIACGKSVAAFSMAVRFLTGPAVIAATSIAIGVRGVLLHVAIVQAALP
+QGIVPFVFAKEYNCHPDILSTAVIFGMLIALPITILYYVLLGV
+>CALJE_DJ01Gene20884
+MIGWEDVCKVVASMVPLYVALGLGYGSVRWWHVFTPDQCDAVNRLVFSFTLPFYAFEFAI
+HADPFSMNCRLIAADIIGKLIVILVLSLWAKCREGSHRCSWFITAFSLSTLNNSLVLGLP
+LLTSLYGPSVRGLVVQTTVMQAIIWLTLLLFMLEIKKAKGILLEESPMKEERSWPSFWCL
+MRMVWLKLALNPNFYASILGITWAFIANRWQLEMPSIMEGSVLVISRAGTGMAMFCIGLF
+MALQKKMLACGARLTALALVLRFVVGPATMAISAFAVGLHGDVLRLAIIQAALPQSVTSF
+IFAREYGLHADVLSTAVILGLLVCLPVLVAYNVLLGFVT