Mercurial > repos > rnateam > mafft
view test-data/seed.aln @ 18:0a507f4bd19a draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 3216eed8c66b2fff7c571ab27d3f1e6aaddc186f
author | bgruening |
---|---|
date | Mon, 14 Jul 2025 18:16:36 +0000 |
parents | |
children |
line wrap: on
line source
>PINI_ARATH/9-617 HVMTAMVPLYVAMILA-YGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIAANNPYAMNLRFLAADSLQK VIVLSLLFLWCKLSR---NGSLDWTITLFSLSTLPNTLVMGIPLLKGMYGN-------------------FS GDLMVQIVVLQCIIWYTLML------------------FLFEYRGAKLLISEQFP-DTAGSIVSIHVDSDIM SLDGRQ-PLETEAEIKEDGKLHVTVRRSNASRSDIYS-----RRSQGL-SATPRPSNLTNAEIYSLQSSRNP TPRGSSFNHTDFY---------------SMMASGGGRNSNFGPGEA---------------VFGSKGPTPRP SNYEEDGGPAKPTAAGTAAGAGRFHYQSGGSGGGGGAHYPAPNPGMFSPNTGGGGGTAAKGNAPVVGGKRQD GN------GRDLHMFVWSSSASPVSDVFGGGGGNHHADYSTATNDHQKDVKISVPQGNSNDNQYVEREEFSF GNKDDDSKVLATDGGNNISNKTTQAKVMPPTSVMTRLILIMVWRKLIRNPNSYSSLFGITWSLI-SFKWNIE MP------------ALIAKSISILSDAGLGMAMFSLGLFMALNPRIIACGNRRAAFA--------AAMRFVV GPAVMLVASYAVGLRGV-LLHVAIIQ------------AALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIA LPITLLYY >Q9FVF6_POPPZ/9-609 HVMTAMVPLYVAMILA-YGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYNMNLRFITADSLQK VIVLVVLALWTKLSK---RGCLEWTITLFSLSTLPNTLVMGIPLLKGMYGD-------------------YS GSLMVQVVVLQCIIWYTLML------------------FMFEYRGAKLLISEQFP-DTAGSIVSIHVDSDIM SLDGRQ-PLETEAAIKEDGKLHVTVRKSNASRSDIFS-----RRSQGLSSTTPRPSNLTNAEIYSLQSSRNP TPRGSSFNHTDFY---------------SMMA--AGRNSNFGASDVY-------------GLSASRGPTPRP SNFEEEHGGSNKPRFHHYHAPGGATHYPAPNPGMFSPTTAASKGVSANANNAAAAAAKKPNGQAQQKAED-- -----------GRDLHMFVWSSSASPVSDVFGGHDYGAHDLKDVRVAVSPGKVEGQRENQEDYNLERDDFSF GNRGLDRERNSHEGEKGGFD--GKPKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLV-SFRWNVK MP------------LIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSIATFS--------MAVRFLT GPAIMAAASIAVGIRGT-LLHIAIVQ------------AALPQGIVPFVFAKEYNVHPEILSTGVIFGMLIA LPITLVYY >B8AIF2_ORYSI/9-590 HVMTAMVPLYVAMILA-YGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNLRFIAADTLQK LMVLAMLTAWSHLSR---RGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGE-------------------FS GSLMVQIVVLQCIIWYTLML------------------FMFEYRGARMLITEQFP-DTAANIASIVVDPDVV SLDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYS-----RRSMGFSSTTPRPSNLTNAEIYSLQSSRNP TPRGSSFNHTDFY---------------SMV----GRSSNFGAADA---------------FGVRTGATPRP SNYEDDASKPKYPLPASNAAPMAGHYPAPNPAVSSAPKGAKKAATNGQAKGEDLHMFVWSS----------- --------------------SASPVSDVFGGGAPDYNDAAAVKSPRKMDGAKDREDYVERDDFSFGNRGVMD RDAEAGDEKAAAAAGADPSKAMAAPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLV-CFRWNFE MP------------AIVLKSISILSDAGLGMAMFSLGLFMALQPHIIACGNKVATYA--------MAVRFLA GPAVMAAASFAVGLRGT-LLHVAIVQ------------AALPQGIVPFVFAKEYSVHPSILSTAVIFGMLIA LPITLVYY >PIN6_ARATH/9-565 TVMCAMAPLYFAMFVA-YGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFISQNNPYKMDTMFILADTLSK IFVFVLLSLWAVFFK---AGGLDWLITLFSIATLPNTLVMGIPLLQAMYGD-------------------YT QTLMVQLVVLQCIIWYTLLL------------------FLFELRAARLLIRAEFPGQAAGSIAKIQVDDDVI SLDGMD-PLRTETETDVNGRIRLRIRRSVSSVPDSVMSSSLC--------LTPRASNLSNAEIFSVN----- -----TPNNRFFHGGGGSGTLQFYNGSNEIMF-CNGDLGGFGFTRPGLGASPRRLSGYASSDAYSLQPTPRA SNFNELDVNGNGTPVWMKSPAAGRIYRQSSPKMMWESGQRHAAK---------------------------- --------------------------------------DINGSVPEKEISFRDALKAAPQATAAGGGASMEE GAAGKDTTPVA-AIG-K-QE-------MPSAIVMMRLILTVVGRKLSRNPNTYSSLLGLVWSLI-SFKWNIP MP------------NIVDFSIKIISDAGLGMAMFSLGLFMALQPKMIPCGAKKATMG--------MLIRFIS GPLFMAGASLLVGLRGS-RLHAAIVQ------------AALPQGIVPFVFAREYNLHPDLLSTLVIFGMIVS LPVTILYY >YFDV_ECOLI/4-307 FFIGDLLPIIVIMLLG-YFSGRR-ETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLV VIVGCFFFSWFGCYK-FFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGD----------------SVSTG LVVAIISIIVNAITIPIGLY------------------LLNPSSGADGKK---------------------- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------NSNLSALISAAKEPVVWAPVLATILVLV-GVKIP-- --------------AAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYN-----------TFLKLIL MPLALLLVGMACHLNSE-HLQMMVLA------------GALPPAFSGIIIASRFNVYTRTGTASLAVSVLGF VVTAPLWI >YWKB_BACSU/5-315 DILILLAPIFFVIVLG-WFAGHF-GSYDAKSAKGVSTLVTKYALPAHFIAGILTTSRSEFLSQVPLMISLII GIVGFYIIILLVCRF-IFKYDLTNSSVFSLNSAQPTFAFMGIPVLGSLFGA-------------------NE VAIPIAVTGIVVNAILDPLA------------------IIIATVGESSKKNEESGD---------------- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------SFWKMTGKSILHGLCEPLAAAPLISMILVLVFNFTLP-- --------------ELGVKMLDQLGSTTSGVALFAVGVTVGIRKIKLSMPAIG-----------IALLKVAV QPALMFLIALAIGLPADQTTKAILL-------------VAFPGSAVAAMIATRFEKQEEETATAFVVSAILS LISLPIII >P71425_KLEPN/4-313 VIIHALAPIFVIMLLG-FWAGKA-GMVDNKNVSLLNIFVMDFALPATLFSATVQTPWAGIVAQSPLVLVLTG AMWITYAAIYFLATS-VFKRTPQDGAVLTLTVALPNYAALGLPILGSVLGE------------------GAS TSLSVAVSIACGSVLMTPFC------------------LLILEREKARAAGENSG----------------- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------STLAMLPVLMWRSVKKPIVWGPLLGVVLSAI-GIKMP-- --------------DLLLASIKPLGLAATAAALFLTGVILSARKLQLNALIAAS-----------TIVKLLV QPFIAWGLVMLLGLHGSIAITAILM-------------IALAAGFFGVVFGNRFGVQSPDAEAVLLLSSVLC ILSLPLFI >Q98L58_RHILO/3-308 PLTETVLFVFSLVALG-YLAGLT-GYLRPASGEGISDFAVSVAMPLLLFQTMVKADFHG--VAPWPLWGAYF TAVAITWAAGHLVTTRIFGRDARAGVVGGVSSAYSNVVLLGAPFILGIFGP-----------------SGFE VLSLLVSVHLPVMMMASIVL------------------FEMFGRGGGEHV---------------------- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------HPLRVLRSFLRRLFINPLIIGILLGLAWRLS-GVPLP-- --------------SLVMRLVDALANTAGPVALFAMGLSLRRFGVSGNVRPALA----------LSALKLFL MPALVLAFVLLLGLPPL-TAKVAVVV------------AALPSGINSYLIAVQFNTGQALASNQMTIATACA AVTTAFWL >O67397_AQUAE/2-289 FIYEKVFFILLIIAFA-YTLKRG-GIFKEEHALPFINYVIYFALPFTIFKNLRF---LEIGKEVLGVVLIAW GAIFLSILFAFLFGK-FLKLEEKTLRAFLLVSSFGNTAFMGYPFLYALEGN-------------------EG LKYAILYDQLGSFLMVITLG---------------------------------------------------- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------LFLAIGKFDLKELILFPPFIALVLSFLLHGV-RFP---- --------------QFFEHSVEIISGSLIPVILFSLGLRLNFTDMKSDYRTLFSA----------LFIKMFL VPLLILVFLKIFGLTSL-PYRVALIE------------SAMPPMVFAGVLALKYELDFRLAFSAITLGIVIS LFTVPVFR >Q97M34_CLOAB/2-296 YVFEQIVILFLIMGIG-YYAAKS-KIIDDDTTSHLSNFIVSITLPLMILTSFNVEYSRKTVITIINLLVFSV AAFIISIVIGKII---SFKFAMDKRDILMFMSIFSNCGFIGFPVLKVVYGN-------------------KG VLYTSIFNLVYNVFIWTIGI------------------VIINDKREKIDY---------------------- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ -------------------------------------------KKILFNHNIIAVIVGVFLMLL-SIKIP-- --------------YVMSSAFNLIGSMTAPLSMIVIGSILA--------GVDFNDIFKDWSLYYIAILRLII IPLIIYFALKPFQINKI-VIGVIIIC------------EAMPGGTLCPILAKSCNRNFKYASKIVLITTILS MMTIPFMT >YB8B_YEAST/13-413 LVFESVLQVVIIALAG-FWSASS-GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIAIIPIFFG LTTGISFISGKIMSR-ILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPNLTWDQIPNDNRDNVASRG ILYLLIFQQIGQMLRWSWGY------------------NKLMKWSGENTQHMPPSQVQSLLERTPNIDNEEL VNEEQEEQELLEEENNRMNSSFLSSSSIGDKIWQKSCTVFER------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ -------------------------------------------IRANLNPPLYSMIFAVVVAAI-GPLQREL F------MEDGFINNTFAEAVTQLGSVSIPLILVVLGSNLYPSA-----EVFPKTVHHSKLLIGSIIGRMIL PSCFLLPIIAIAV-----KYINVSILDDPIFLVVGFLLTVSPPAIQLTQITQLNEFFEAEMADILFWGYAVL SLPVSIIV >YDQ4_SCHPO/18-440 PIIESDLEVIVIALGG-YVLAKK-GFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSLLPVFYV IISAASILISFLLAK-LFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDLLWDKIPDDTPDKVASRG IMYLLIFSQLGQALRWSYGY------------------RILLSPNQPEDPLPIGNRSWSHSDVNEEEIQNLL ASSANVDGVQNSVQANEGSTVQTDSSAISKNDNVQVETSNEEVGGFGAASSKISK----------------- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------------FIVLLLDFFSPPLYSLFIALFIAVV-PPLQRFF F------EEGSFVEGSITSGIRMAGQVAVPMILVVLGASLATDISKTEPTQEVRKNNDTRVIIVCLLGRMVV VPLALLPAFSLLS-----YFSEISTVDDPVFVVVIFLLVGSPTAIQLTQICQLNGVFERECAKVLWWSYAVF TPPNSLLL >PILS4_ARATH/9-407 ASSKPVVETLLITSVGFYLALDTVNLLGHDARKHLNNIVFYVFSPSLIGSRLADSVTYESLVKMWFMPVNVL LTFMIGSLLGWIVIV-ITKPPSQLRGLIISCCASGNLGTMPLIIIPAICKE------KGGPFGDSESCEKYG MGYVTLSMT--AFFISVYKHDTNWYVSGGNGLLMDLYINLMR------VLSNSPVETHTHSIESNYDDSCKV QLISSK------------------------------------------EEEKEEDNHQVGRWEEVKQ----- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------RVVSLSKKVNLGSIFAPATIAAIIALVIGLI-TPLRNLI IGTVAPF-------RVIQDSLTLLGDGAIPAMTLILGGNLLKGMRRSEVRSSEMKNSCIIGV---LVARYIL LPVSGVLLVRGAY------KLDLVTS-EPLYQFVLLLQYAVPPAMNLGTKTQLFGAGESECSVIMLWTYSLA AVSLTVWP >PILS5_ARATH/9-388 VASMPVIQVLFMSLVGAFMASDRCKLFPVEARNSMNKVVFVLFAPALMFANLAQTVTLEDIISWWFMPVNMG LTFLIGGLLGWLVVK-ILKPPPYLEGLIVATCSAGNMGNLPIILVPAICDE------DKSPFGNRSVCRTVG LSYASFSMALGGFYIWTYTF------------------RLIKGSAMKVQAIEESEKIAIKSSNSDLEADHKT HLLGAP-----------------------------------------EDKENKVVKEKTGFWRKGVD----- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------FLHEI-----LEELLAPPTLGAIIGFIFGAV-RWLRNLI IGDDAPL-------RIVQSTAKLLGDGTIPCMTIILGGNLIQG-----LRSSAVKPMVVLGI---VCVRYIA MPIIGIGIVLTAA------NLGFLPA-DPLFQYVLMLQFTLPPAMNIGTMTQLYNVAQDECSVLMLWTYLVA ILALTVWS >PILS2_ARATH/18-441 SGVVPLLKLICLTVIGLLLAHPKTQLVPRATFRLLSKLVFALFLPCLIFTELGESITLDNIVQWWFIPVNVL LSAVVGSLIGYLVVL-ICRPPPEFNRFTIVMTAFGNTGNLLLAIVSSVCHT--------KTNPFGPNCNSRG VSYVSFAQWVAVILVYTVVY------------------HMMEPPLEYYEVVEEEG-VEIEEINVENHDASRP LLVEAEWPGIEDKETEHCKTPFIARVFNSISSFSQTSFPEVDLGGEYGGESSSPRSIQCLAEPRVMR----- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------RIRVVAEQTPVKHILQPPTIASLLAIIIGSV-PQLKSVV FGYDAPL-------SFITDSLNIMGSAMVPSVMLVLGGMLSEGPNESTLGLRTTIGI--------SVARLLV LPLVGIGIVMSAD------KLGLISSADPMFKFVLLLQYSTPSAILLGAIASLRGYAVREASALLFWQHIFA LLSLTFYI >PILS6_ARATH/30-423 IAVMPIAKVFTMCFLGLLMASKYVNILPPSGRKLLNGLVFSLLLPCLIFSQLGQAVTLQKMLQWWFIPVNVV LGTISGSIIGFIVAS-IVRPPYPYFKFTIIQIGVGNIGNVPLVLLAALCRD------TSNPFGDSEKCSIDG TAYISFGQWVGAIILYTYVY------------------QMFAPPPEGFDAEEENLALKTLPVDAAPEQVPLL TQNFPKDFSPTQDL--------------------------------LPVQSTEPRGRGVSRKGKIAQ----- ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ ---------------------------------IFVFLYEKLKLKQIVQPAIVASILAMILGAI-PFTKKLI FTNGAPL-------FFFTDSCMILGDAMIPCILLALGGNLINGPGSSKLGFKTTAAI--------IIGRLVL VPPVGLGIVTVAD------KLGFLPADDKMFRFVLLLQHTMPTSVLSGAVANLRGCG-RESAAVLFWVHIFA IFSMAGWM >PIN4_ARATH/9-611 TVLTAVVPLYVAMILA-YGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFVAADTLQK IIMLVLLALWANLTK---NGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGT-------------------YA GSLMVQVVVLQCIIWYTLLL------------------FLFEYRGAKLLIMEQFP-ETGASIVSFKVESDVV SLDGHD-FLETDAEIGNDGKLHVTVRKSNASRRSLMM--------------TPRPSNLTGAEIYSLS----S TPRGSNFNHSDFY---------------SVMGFPGGRLSNFGPADLY-------------SVQSSRGPTPRP SNFEENNAVKYGFYNNTNSSVPAAGSYPAPNPEFSTGTGVSTKPNKIPKENQQQLQEKDSKASHDAKELHMF VWSSSASPVSDVFGGGAGDNVATEQSEQGAKEIRMVVSDQPRKSNARGGGDDIGGLDSGEGEREIEKATAGL NKMGSNSTAELEAAG-G-DGGGNNGTHMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWALV-AYRWHVA MP------------KILQQSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFA--------MAVRFIT GPAIMAVAGIAIGLHGD-LLRIAIVQ------------AALPQGIVPFVFAKEYNVHPTILSTGVIFGMLIA LPITLVYY >PIN7_ARATH/9-614 TVLTAVIPLYVAMILA-YGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISSNNPYAMNLRFIAADTLQK LIMLTLLIIWANFTR---SGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGE-------------------YS GSLMVQIVVLQCIIWYTLLL------------------FLFEYRGAKILIMEQFP-ETGASIVSFKVESDVV SLDGHD-FLETDAQIGDDGKLHVTVRKSNASRRSFYG--------GGGTNMTPRPSNLTGAEIYSL----NT TPRGSNFNHSDFY---------------SMMGFPGGRLSNFGPADMY-------------SVQSSRGPTPRP SNFEESCAMASSPRFGYYPGGAPGSYPAPNPEFSTGNKTGSKAPKENHHHVGKSNSNDAKELHMFVWGSNGS PV-----SDRAGLQVDNGANEQVGKSDQGGAKEIRMLISDHTQNGENKAGPMNGDYGGEEESERVKEVPNGL HKLRCNSTAELNPKEAIETGETVPVKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALV-AFRWDVA MP------------KIIQQSISILSDAGLGMAMFSLGLFMALQPKLIACGNSTATFA--------MAVRFFT GPAVMAVAAMAIGLRGD-LLRVAIVQ------------AALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIA LPITLVYY