Mercurial > repos > rnateam > mafft
view test-data/mafft_fftns_result.aln @ 5:15974dd17515 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit fc3727b1b39cd5654a523d03e0df2b9ac87ddcda
| author | rnateam |
|---|---|
| date | Tue, 20 Sep 2016 09:30:47 -0400 |
| parents | a4e086689fae |
| children | aaefa93c2dd2 |
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> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] --------------------------------MNGTE--------------GDNF----- -------------YVP-----F-SNKTG----------LARSPYEYPQY-YLAEPWK--- --------------YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMA NLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIV ICKPMGN-FRFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPD YYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE-------------- ------------------------------------------------------AAAAQQ ------------------------------------------------------------ --------------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVA FYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC------ --GKNPLGDDE--SGASTSKTEVSSVS-TSPVS--------------------------- -----------------------------------PA----------------------- -- > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] --------------------------------MNGTE--------------GPNF----- -------------YVP-----F-SNITG----------VVRSPFEQPQY-YLAEPWQ--- --------------FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA DLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVV VCKPMSN-FRFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGID YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE-------------- ------------------------------------------------------AAAQQQ ------------------------------------------------------------ --------------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVA MYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC------ --GKNPLGDDE--ASATASKTE------TSQVA--------------------------- -----------------------------------PA----------------------- -- > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 --------------------------------MNGTE--------------GINF----- -------------YVP-----M-SNKTG----------VVRSPFEYPQY-YLAEPWK--- --------------YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVA DLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIV VCKPMGN-FRFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPD YYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE-------------- ------------------------------------------------------AAAQQQ ------------------------------------------------------------ --------------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVA FWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC------ --GKNPFGDEDVSSTVSQSKTEVSSVS-SSQVS--------------------------- -----------------------------------PA----------------------- -- > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish --------------------------------MNGTE--------------GKNF----- -------------YVP-----M-SNRTG----------LVRSPFEYPQY-YLAEPWQ--- --------------FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVA GTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIV VCKPMGS-FKFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPD YYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA-------------- ------------------------------------------------------AAAQQQ ------------------------------------------------------------ --------------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVA AWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC------ --GKNPLGDDE-SSTVSTSKTEVSS------VS--------------------------- -----------------------------------PA----------------------- -- > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish --------------------------------MNGTE--------------GNNF----- -------------YVP-----L-SNRTG----------LVRSPFEYPQY-YLAEPWQ--- --------------FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVA GAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIV VCKPMGS-FKFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPD YYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA-------------- ------------------------------------------------------AAAQQQ ------------------------------------------------------------ --------------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVA AWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC------ --GKNPLGDEE-SSTVSTSKTEVSS------VS--------------------------- -----------------------------------PA----------------------- -- > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- --------------------------------MKQVPEF------------HEDF----- -------------YIPIP-LDI-NNLS------------AYSPFLVPQD-HLGNQGI--- --------------FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIA NLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLV ICKPLGN-FTFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPD WYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL-------------- ------------------------------------------------------AAKAQA ------------------------------------------------------------ --------------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFS LWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC------ --GKN-IEEDE--ASTSSQVTQVSS------VA--------------------------- -----------------------------------PEK---------------------- -- > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] --------------------------------MRKMS--------------EEEF----- -------------YL------F-KNIS------------SVGPWDGPQY-HIAPVWA--- --------------FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG GFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV ICKPFGN-FRFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPD WYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA-------------- ------------------------------------------------------VAAQQQ ------------------------------------------------------------ --------------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFA MYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC------ --GKA-MTDES--DTCSSQKTEVSTVS-STQVG--------------------------- -----------------------------------PN----------------------- -- > 8=opsin, greensensitive human (fragment) S07060 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLV VCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD VFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA-------------- ------------------------------------------------------VAKQQK ------------------------------------------------------------ --------------------ESESTQK------AEKEVTRMVVVMVLAFC---------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -- > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] --------------------------------MAQQWSLQRLAGRHPQDSYEDST----- -------------QSSI--FTY-TNSNS-----------TRGPFEGPNY-HIAPRWV--- --------------YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVA DLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMV VCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD VFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA-------------- ------------------------------------------------------VAKQQK ------------------------------------------------------------ --------------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFA CFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF------- --GKK-VDDGS--ELSSASKTEVSSV---SSVS--------------------------- -----------------------------------PA----------------------- -- > 10== Z68193 1 human Red Opsin <>[] --------------------------------MAQQWSLQRLAGRHPQDSYEDST----- -------------QSSI--FTY-TNSNS-----------TRGPFEGPNY-HIAPRWV--- --------------YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVA DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLV VCKPFGN-VRFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD VFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA-------------- ------------------------------------------------------VAKQQK ------------------------------------------------------------ --------------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFA CFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF------- --GKK-VDDGS--ELSSASKTEVSSV---SSVS--------------------------- -----------------------------------PA----------------------- -- > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] --------------------------------MTEAWNVAVFAARRSRDD-DDTT----- -------------RGSV--FTY-TNTNN-----------TRGPFEGPNY-HIAPRWV--- --------------YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFV DLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFV VCKPFGN-IKFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPD VFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA-------------- ------------------------------------------------------VAAQQK ------------------------------------------------------------ --------------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFV SFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF------- --GKK-VDDGS--EASTTSRTEVSSVS-NSSVA--------------------------- -----------------------------------PA----------------------- -- > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] --------------------------------MAA-WEAAFAARRRHEE--EDTT----- -------------RDSV--FTY-TNSNN-----------TRGPFEGPNY-HIAPRWV--- --------------YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVA DLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFV VCKPFGN-IKFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPD VFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA-------------- ------------------------------------------------------VAAQQK ------------------------------------------------------------ --------------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFA CFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF------- --GKK-VDDGS--EVST-SRTEVSSVS-NSSVS--------------------------- -----------------------------------PA----------------------- -- > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] --------------------------------MS-----------------SNSS----- -------------QAP---------PNG-----------TPGPFDGPQWPYQAPQST--- --------------YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVA DLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVV VCKPLGD-FQFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPN WYTGGSNN--NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA-------------- ------------------------------------------------------AAAQQK ------------------------------------------------------------ --------------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFA LVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY--- -QPQR-TGKAS--PGTPGPHADVTAAGLRNKVM--------------------------- -----------------------------------PAHPV-------------------- -- > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] ----------MES--GNV-----------SSSLFGNVSTAL----------RPEA----- -------------RLSA------ETRLL----------GWNVPPEELR--HIPEHWLTYP E--------PPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFC DFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNV ITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFD YLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA-------------- ------------------------------------------------------LRDQAK KMN---------------VESLRS------------------------------------ -------------------NVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMS LIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--- ---NE-KAPES----SAVASTSTTQEPQQTTAA--------------------------- ------------------------------------------------------------ -- > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 ----------MEY--HNV-----------SSVL-GNVSSVL----------RPDA----- -------------RLSA------ESRLL----------GWNVPPDELR--HIPEHWLIYP E--------PPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFC DFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNV ITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFD YLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA-------------- ------------------------------------------------------LRDQAK KMN---------------VDSLRS------------------------------------ -------------------NVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMS LIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--- ---SE-KAPES----RAAISTSTTQEQQQTTAA--------------------------- ------------------------------------------------------------ -- > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] ----------ME-------------------PLCNASEPPL----------RPEA----- -------------R-SSG---NGDLQFL----------GWNVPPDQIQ--YIPEHWLTQL E--------PPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVF DLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNV ITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFD YLS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA-------------- ------------------------------------------------------LREQAK KMN---------------VESLRS------------------------------------ -------------------NVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMS LIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--- ---NE-KSGEI----SSAQSTTTQEQ-QQTTAA--------------------------- ------------------------------------------------------------ -- > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 ----------MD-------------------ALCNASEPPL----------RPEA----- -------------RMSSG---SDELQFL----------GWNVPPDQIQ--YIPEHWLTQL E--------PPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVF DLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNV ITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFD YLS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA-------------- ------------------------------------------------------LREQAK KMN---------------VESLRS------------------------------------ -------------------NVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMS LIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--- ---NE-KSGEA----SSAQSTTTQEQTQQTSAA--------------------------- ------------------------------------------------------------ -- > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 --------------------------------MTNATGPQM----------AYYG----- -------------AASMD-FGYPEGVSI----------VDFVRPEIKP--YVHQHWYNYP P--------VNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALS DLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNI ICNGFNG-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYD YLT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA-------------- ------------------------------------------------------MRAQAK KMN---------------VSTLRS------------------------------------ --------------------NEADAQR------AEIRIAKTALVNVSLWFICWTPYALIS LKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV--- ---HE-TETKS-NDDSQSNSTVAQDKA--------------------------------- ------------------------------------------------------------ -- > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 --------------------------------MANVTGPQM----------AFYG----- -------------SGAAT-FGYPEGMTV----------ADFVPDRVKH--MVLDHWYNYP P--------VNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALS DLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNI ICNGFNG-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYD YFT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA-------------- ------------------------------------------------------MRAQAK KMN---------------VTNLRS------------------------------------ --------------------NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAIT IQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV--- ---HE-KDPND-VEENQSSNTQTQEKS--------------------------------- ------------------------------------------------------------ -- > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] ---------------MES-----------FAVAAAQLGPHF----------APLS----- ------------------------NGSV----------VDKVTPDMAH--LISPYWNQFP A--------MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV IVKGMAG-RPMTIPLALGKM---------------------------YVPEGNLTSCGID YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-------------- ------------------------------------------------------MREQAK KMN---------------VKSLRS------------------------------------ --------------------SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVIN CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF--- ---GK-VDDGK-SSDAQSQATASEAESKA------------------------------- ------------------------------------------------------------ -- > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] ---------------MES-----------FAVAAAQLGPHF----------APLS----- ------------------------NGSV----------VDKVTPDMAH--LISPYWNQFP A--------MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV IVKGMAG-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGID YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-------------- ------------------------------------------------------MREQAK KMN---------------VKSLRS------------------------------------ --------------------SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVIN CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF--- ---GK-VDDGK-SSDAQSQATASEAESKA------------------------------- ------------------------------------------------------------ -- > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' ---------------MDS-----------FAAVATQLGPQF----------AAPS----- ------------------------NGSV----------VDKVTPDMAH--LISPYWDQFP A--------MDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV IVKGMAG-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGID YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-------------- ------------------------------------------------------MREQAK KMN---------------VKSLRS------------------------------------ --------------------SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVIN CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF--- ---GK-VDDGK-SSEAQSQATTSEAESKA------------------------------- ------------------------------------------------------------ -- > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] ----------MERSHLPE-----------TPFDLAHSGPRF----------QAQS----- -------------SG---------NGSV----------LDNVLPDMAH--LVNPYWSRFA P--------MDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFS DFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNV IVKGING-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSID YMT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA-------------- ------------------------------------------------------MREQAK KMN---------------VKSLRS------------------------------------ --------------------SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVIC YFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF--- ---GN-TDEPKPDAPASDTETTSEADSKA------------------------------- ------------------------------------------------------------ -- > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 ----------MERSLLPE-----------PPLAMALLGPRF----------EAQT----- -------------GG---------NRSV----------LDNVLPDMAP--LVNPHWSRFA P--------MDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFS DFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNV IVKGING-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSID YMT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA-------------- ------------------------------------------------------MRDQAK KMN---------------VKSLRS------------------------------------ --------------------SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIIC YFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC--- ---GT-TDEPKPDAPPSDTETTSEAESKD------------------------------- ------------------------------------------------------------ -- > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] --------------------------------MIAVSGPSY----------EAFS----- -------------YGGQARF---NNQTV----------VDKVPPDMLH--LIDANWYQYP P--------LNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAIS NFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNV IVKGLSG-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTD YFN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN-------------- ------------------------------------------------------MREQAK KMN---------------VASLRS------------------------------------ --------------------SENQNTS------AECKLAKVALMTISLWFMAWTPYLVIN FSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC--- ----A-AEPSS-DAVSTTSGTTTVTDNEKSNA---------------------------- ------------------------------------------------------------ -- > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] ----------------------------------MANQLSY----------SSLG----- -------------WPYQP------NASV----------VDTMPKEMLY--MIHEHWYAFP P--------MNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFS DFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNV IVRGMAA-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVD YLT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ-------------- ------------------------------------------------------LREQAK KMN---------------VASLRA------------------------------------ -------------------NADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIIS WAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC--- ---GS-GESGS-DVKSEASATTTMEEKPKIPEA--------------------------- ------------------------------------------------------------ -- > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] ---------------------------------------MV----------ESTT----- -------------LVNQT-WWY--NPTV----------D------------IHPHWAKFD P--------IPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMS DLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNV IGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFD YLS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE-------------- ------------------------------------------------------MAAMAK RLN---------------AKELR------------------------------------- --------------------KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIA LLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQ FDEKE-CEDAN-DAEEEVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQG Y--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAY QA > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] ----------------------------------------M----------GRDL----- -------------RDNET-WWY--NPSI----------V------------VHPHWREFD Q--------VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFS DFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNV IGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFD YIS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE-------------- ------------------------------------------------------MAAMAK RLN---------------AKELR------------------------------------- --------------------KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVA LLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQ FDDKE-TEDDK-DAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQG YAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAY QA > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra ---------MMDVNSSGRPDLYGHLRSF-LLPEVGRGLPDL----------SPDGGADPV AGSWAPHLLS---EVTAS-----PAPTW------------DAPPDNAS--GCGEQIN--- ---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALA DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF----------- --------------------------------------------P----GFPRVEPDSVI ALNG--------------IVKLQ----------------------KEVEECANLSR---- --------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS TARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQC------ ---QY-RNINR--KLSAAGMHEALKLAER------------------------------- -----------------------------------PERPEFVL-QNADYCRKKGHDS--- -- > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] ------------------------------------------------------------ ----MPHLLSGFLEVTAS-----PAPTW------------DAPPDNVS--GCGEQIN--- ---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALA DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF----------- --------------------------------------------P----GFPRVQPESVI SLNG--------------VVKLQ----------------------KEVEECANLSR---- --------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS TARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQC------ ---QY-RNINR--KLSAAGMHEALKLAER------------------------------- -----------------------------------PERSEFVL-QNSDHCGKKGHDT--- -- > 31=p A47425 serotonin receptor 5HT-7 - rat ------------------------------------------------------------ ----MPHLLSGFLEVTAS-----PAPTW------------DAPPDNVS--GCGEQIN--- ---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALA DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF----------- --------------------------------------------P----GFPRVQPESVI SLNG--------------VVKLQ----------------------KEVEECANLSR---- --------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS TARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQC------ ---QY-RNINR--KLSAAGMHEALKLAER------------------------------- -----------------------------------PERSEFVL-QNSDHCGKKGHDT--- -- > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] ----------MDVLSPG------------QGNNTTSPPAPF----------ETGG----- -------------NTTGI-----SDVTV-------------------------------- ------------SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVT DLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWA ITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKD H----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK-------------- -------------------------TVKKVEKTGADTRHGASPAP---------QPKKS- -VNGESGSRNWRL-----GVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPL PSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVA LVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKC------ ---KF-CRQ--------------------------------------------------- ------------------------------------------------------------ -- > 33=p A35181 serotonin receptor class 1A - rat ----------MDVFSFG------------QGNNTTASQEPF----------GTGG----- -------------NVTSI-----SDVTF-------------------------------- ------------SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVT DLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWA ITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKD H----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK-------------- -------------------------TVRKVEKKGAGTSLGTSSAP---------PPKKS- -LNGQPGSGDWRR-----CAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPL PSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVA LVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKC------ ---KF-CRR--------------------------------------------------- ------------------------------------------------------------ -- > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGL----------SPTG----- -------------LVTSD-----FNDSYGLTGQFINGSHSSRSRDNAS--ANDTSATNMT DDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVA DLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWA VTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQD K----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEE TTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENAN GVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAMLERQ-CNNGKKISSN DTPYS-------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIA LIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFG------ ---KY-RRGHR------------------------------------------------- ------------------------------------------------------------ -- > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGL----------SPTG----- -------------LVTSD-----FNDSYGLTGQFINGSHSSRSRDNAS--ANDTSATNMT DDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVA DLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWA VTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQD K----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEE TTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENAN GVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAMLERQ-CNNGKKISSN DTPYS-------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIA LIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFG------ ---KY-RRGHR------------------------------------------------- ------------------------------------------------------------ -- > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGW----------EPNW----- -------------NVTVV-----PNTTW---------WQASAPFDTPA--ALVRAAAK-- ------------------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVA DLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWA VTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQD V----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIR--------------- ------------------------------RRRGATARGGVGPPP---------VPAGGA LVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTS---PEKQSCANGLEADPP TTGYGAVAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLA ILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCG------ ---RR-VRRRR--A---------------------------------------------- -----------------------------------PQ----------------------- --