view test-data/mafft_nwns_result.aln @ 8:4de39704d423 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 7f48fa9f0c2ef08ffe621a8215ea307ab780b9b5"
author bgruening
date Sat, 13 Mar 2021 22:18:32 +0000
parents aaefa93c2dd2
children
line wrap: on
line source

CLUSTAL format alignment by MAFFT NW-NS-2 (v7.455)


1==             ----------------------------------------MNG----------------T
2==             ----------------------------------------MNG----------------T
3==             ----------------------------------------MNG----------------T
4=p             ----------------------------------------MNG----------------T
5=p             ----------------------------------------MNG----------------T
6==             ----------------------------------------MKQ----------------V
7==             ----------------------------------------MRK----------------M
8=opsin,        ------------------------------------------------------------
9==             ----------------------------------------MAQQWSLQRLAGRHPQDSYE
10==            ----------------------------------------MAQQWSLQRLAGRHPQDSYE
11==            ----------------------------------------MTEAWNVAVFAARRSRDD-D
12==            ----------------------------------------MAA-WEAAFAARRRHEE--E
13==            ----------------------------------------MS-----------------S
14==            ----------MESGNVSS------------SLFGNVST-ALRP----------------E
15==            ----------MEYHNVSS------------VL-GNVSS-VLRP----------------D
16==            ----------ME------------------PL-CNASEPPLRP----------------E
17==            ----------MD------------------AL-CNASEPPLRP----------------E
18==            --------------------------------MTNATGPQMAY----------------Y
19==            --------------------------------MANVTGPQMAF----------------Y
20==            ----------ME----SF------------AVAAAQLGPHFAP----------------L
21==            ----------ME----SF------------AVAAAQLGPHFAP----------------L
22==            ----------MD----SF------------AAVATQLGPQFAA----------------P
23==            -----MERSHLP----ET------------PFDLAHSGPRFQA----------------Q
24==            -----MERSLLP----EP------------PLAMALLGPRFEA----------------Q
25==            --------------------------------MIAVSGPSYEA----------------F
26==            ----------------------------------MANQLSYSS----------------L
27==            ---------------------------------------MVES----------------T
28==            ----------------------------------------MGR----------------D
29==            ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGA------------D
30==            ------------------------------------------------------------
31=p            ------------------------------------------------------------
32==            ----------MDVLSP--------------------------------------------
33=p            ----------MDVFSF--------------------------------------------
34==            MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T
35=p            MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T
36==            -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNV------------T
                                                                            

1==             E--G--DNFYVP----FSNKTGLARSPYEYPQY-------YLAEPWK---------YSAL
2==             E--G--PNFYVP----FSNITGVVRSPFEQPQY-------YLAEPWQ---------FSML
3==             E--G--INFYVP----MSNKTGVVRSPFEYPQY-------YLAEPWK---------YRLV
4=p             E--G--KNFYVP----MSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKIL
5=p             E--G--NNFYVP----LSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKLL
6==             PEFH--EDFYIPIPLDINNLS--AYSPFLVPQD-------HLGNQGI---------FMAM
7==             S--E--EEFYL-----FKNIS--SVGPWDGPQY-------HIAPVWA---------FYLQ
8=opsin,        ------------------------------------------------------------
9==             DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT
10==            DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT
11==            DTTR--GSVFT-----YTNTNN-TRGPFEGPNY-------HIAPRWV---------YNLV
12==            DTTR--DSVFT-----YTNSNN-TRGPFEGPNY-------HIAPRWV---------YNLT
13==            NSSQ--AP-----------PNG-TPGPFDGPQW------PYQAPQST---------YVGV
14==            ARLS--A----------ETRLLGWNVPPEELR--------HIPEHWLTYPEPPESMNYLL
15==            ARLS--A----------ESRLLGWNVPPDELR--------HIPEHWLIYPEPPESMNYLL
16==            AR-S--SG---N----GDLQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML
17==            ARMS--SG---S----DELQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML
18==            GAAS--MD-FGY----PEGVSIVDFVRPEIKP--------YVHQHWYNYPPVNPMWHYLL
19==            GSGA--AT-FGY----PEGMTVADFVPDRVKH--------MVLDHWYNYPPVNPMWHYLL
20==            S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL
21==            S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL
22==            S-----------------NGSVVDKVTPDMAH--------LISPYWDQFPAMDPIWAKIL
23==            SSG---------------NGSVLDNVLPDMAH--------LVNPYWSRFAPMDPMMSKIL
24==            TGG---------------NRSVLDNVLPDMAP--------LVNPHWSRFAPMDPTMSKIL
25==            SYGG--QARF-------NNQTVVDKVPPDMLH--------LIDANWYQYPPLNPMWHGIL
26==            GWPY--QP----------NASVVDTMPKEMLY--------MIHEHWYAFPPMNPLWYSIL
27==            TLVN--QT-WWY------NPTVD------------------IHPHWAKFDPIPDAVYYSV
28==            LRDN--ET-WWY------NPSIV------------------VHPHWREFDQVPDAVYYSL
29==            PVAGSWAPHLLS------EVTASPAPTWDAPPDNASGCGEQIN--------YGRVEKVVI
30==            ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI
31=p            ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI
32==            ---------------GQGNNTTSPPAPFET-GGNTTGISDVT---------VSYQ--VIT
33=p            ---------------GQGNNTTASQEPFGT-GGNVTSISDVT---------FSYQ--VIT
34==            SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT
35=p            SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT
36==            VVPN--TTWW------------QASAPFDTPAALVRAAAK--------------------
                                                                            

1==             AAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSM
2==             AAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSL
3==             CCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAW
4=p             ALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAI
5=p             AVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAI
6==             SVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFF
7==             AAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASC
8=opsin,        ------------------------------------------DLAETVIA-STISIVNQV
9==             SVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQV
10==            SVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQV
11==            SFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQI
12==            SVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQI
13==            AVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNI
14==            GTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSF
15==            GTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSF
16==            GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSF
17==            GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSF
18==            GVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCF
19==            GVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCF
20==            TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
21==            TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
22==            TAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
23==            GLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY
24==            GLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY
25==            GFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCY
26==            GVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCF
27==            GIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAF
28==            GIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF
29==            GSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
30==            GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
31=p            GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
32==            SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV
33=p            SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV
34==            SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI
35=p            SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI
36==            AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEV
                                                          .                 

1==             N-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIM
2==             H-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIM
3==             N-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMM
4=p             N-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFA
5=p             N-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASA
6==             N-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIA
7==             N-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALT
8=opsin,        S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV
9==             Y-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIV
10==            S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV
11==            F-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAII
12==            S-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVA
13==            N-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVS
14==            H-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIA
15==            H-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIA
16==            H-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI
17==            H-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI
18==            SGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVV
19==            SGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATF
20==            F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
21==            F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
22==            F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
23==            Y-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM
24==            Y-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM
25==            Y-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALI
26==            A-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATL
27==            M-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFL
28==            L-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI
29==            IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
30==            IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
31=p            IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
32==            L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA
33=p            L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA
34==            S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL
35=p            S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL
36==            V-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGM
                    :   :    * :                  :  :*:  :   :             

1==             GVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMF
2==             GVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMF
3==             GIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMF
4=p             GIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMF
5=p             GIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMF
6==             GCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLF
7==             VVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF
8=opsin,        GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
9==             GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
10==            GIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
11==            GIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLM
12==            GILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLM
13==            GCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLF
14==            MIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF
15==            MIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF
16==            MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF
17==            MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF
18==            FALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIF
19==            MCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIF
20==            KM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
21==            KIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
22==            KIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
23==            KILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYS
24==            KIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYS
25==            RIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYG
26==            LLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYG
27==            MIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMY
28==            MIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMF
29==            MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
30==            MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
31=p            MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
32==            LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST
33=p            LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST
34==            MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST
35=p            MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST
36==            MIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFAT
                                                         :                  

1==             VVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQ--------------------------
2==             VVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQ--------------------------
3==             VIHFIIPVVVIFFSYGRLICKV----REAAAQQQ--------------------------
4=p             VCHFILPVAVIFFTYGRLVCTV----KAAAAQQQ--------------------------
5=p             ICHFILPVTIIFFTYGRLVCTV----KAAAAQQQ--------------------------
6==             CFCFAVPFGTIVFCYGQLLITL----KLAAKAQA--------------------------
7==             IFCFIVPLSLICFSYTQLLRAL----KAVAAQQQ--------------------------
8=opsin,        VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK--------------------------
9==             VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK--------------------------
10==            VTCCIIPLAIIMLCYLQVWLAI----RAVAKQQK--------------------------
11==            ITCCFLPLFIIIVCYLQVWMAI----RAVAAQQK--------------------------
12==            VTCCFFPLAIIILCYLQVWLAI----RAVAAQQK--------------------------
13==            VTCFVLPLSLILFSYTNLLLTL----RAAAAQQK--------------------------
14==            FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK-------------------------
15==            FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK-------------------------
16==            FFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK-------------------------
17==            LFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK-------------------------
18==            VFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK-------------------------
19==            IFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK-------------------------
20==            IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
21==            IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
22==            IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
23==            LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK-------------------------
24==            LFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK-------------------------
25==            IWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK-------------------------
26==            LAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK-------------------------
27==            FCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR-------------------------
28==            ILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR-------------------------
29==            AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
30==            AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
31=p            AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
32==            FGAFYIPLLLMLVLYGRIF-------RAARFRIRK-------------------------
33=p            FGAFYIPLLLMLVLYGRIF-------RAARFRIRK-------------------------
34==            VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY
35=p            VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY
36==            ASSFYVPVLIILILYWRIY-------QTARKRIR--------------------------
                      *   :   *  :                                          

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            --------------------------------------------------MN--------
15==            --------------------------------------------------MN--------
16==            --------------------------------------------------MN--------
17==            --------------------------------------------------MN--------
18==            --------------------------------------------------MN--------
19==            --------------------------------------------------MN--------
20==            --------------------------------------------------MN--------
21==            --------------------------------------------------MN--------
22==            --------------------------------------------------MN--------
23==            --------------------------------------------------MN--------
24==            --------------------------------------------------MN--------
25==            --------------------------------------------------MN--------
26==            --------------------------------------------------MN--------
27==            --------------------------------------------------LN--------
28==            --------------------------------------------------LN--------
29==            ---------------------------------PGFPRV----EPDSVIALNG-------
30==            ---------------------------------PGFPRV----QPESVISLNG-------
31=p            ---------------------------------PGFPRV----QPESVISLNG-------
32==            --------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR--
33=p            --------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG--
34==            SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS---
35=p            SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS---
36==            -------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIA
                                                                            

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            --VESL------------------------------------------------------
15==            --VDSL------------------------------------------------------
16==            --VESL------------------------------------------------------
17==            --VESL------------------------------------------------------
18==            --VSTL------------------------------------------------------
19==            --VTNL------------------------------------------------------
20==            --VKSL------------------------------------------------------
21==            --VKSL------------------------------------------------------
22==            --VKSL------------------------------------------------------
23==            --VKSL------------------------------------------------------
24==            --VKSL------------------------------------------------------
25==            --VASL------------------------------------------------------
26==            --VASL------------------------------------------------------
27==            --AKEL------------------------------------------------------
28==            --AKEL------------------------------------------------------
29==            --IVKL----------------------QK---------EVEECAN--------------
30==            --VVKL----------------------QK---------EVEECAN--------------
31=p            --VVKL----------------------QK---------EVEECAN--------------
32==            -------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG--
33=p            -------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG--
34==            -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS--
35=p            -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS--
36==            AAVVAVIGRPLPTISETTTTGFTNVSS----NNTSP---EKQSCANGLEADPPTTGYGAV
                                                                            

1==             -------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H
2==             -------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H
3==             -------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N
4=p             -------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N
5=p             -------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N
6==             -------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H
7==             -------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N
8=opsin,        -------------ESESTQK------AEKEVTRMVVVMVLAFC-----------------
9==             -------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N
10==            -------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N
11==            -------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N
12==            -------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N
13==            -------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H
14==            ----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G
15==            ----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G
16==            ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
17==            ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
18==            ----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-G
19==            ----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G
20==            ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
21==            ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
22==            ----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K
23==            ----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K
24==            ----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-K
25==            ----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-N
26==            ----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S
27==            ----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G
28==            ----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G
29==            ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
30==            ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
31=p            ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
32==            PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
33=p            SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
34==            -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V
35=p            -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V
36==            AAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-C
                                           * .           :                  

1==             QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPL
2==             QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPL
3==             KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPF
4=p             KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPL
5=p             KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPL
6==             RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC--------GKN-I
7==             RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC--------GKA-M
8=opsin,        ------------------------------------------------------------
9==             PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V
10==            PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V
11==            PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF---------GKK-V
12==            PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF---------GKK-V
13==            KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY----QPQR-T
14==            DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------N
15==            DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------S
16==            DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------N
17==            DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------N
18==            DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-T
19==            NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-K
20==            F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
21==            F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
22==            F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
23==            I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-T
24==            I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-T
25==            L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-A
26==            SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-G
27==            PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-C
28==            PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-T
29==            GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR--
30==            GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR----NINR--
31=p            GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR--
32==            ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RQ----
33=p            ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RR----
34==            DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR--
35=p            DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR--
36==            DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV----RRRR--
                                                                            

1==             GDDE--SGASTSKTEVSSVS-TSPVSPA--------------------------------
2==             GDDE--ASATASKTE------TSQVAPA--------------------------------
3==             GDEDVSSTVSQSKTEVSSVS-SSQVSPA--------------------------------
4=p             GDDE-SSTVSTSKTEVSS------VSPA--------------------------------
5=p             GDEE-SSTVSTSKTEVSS------VSPA--------------------------------
6==             EEDE--ASTSSQVTQVSS------VAPEK-------------------------------
7==             TDES--DTCSSQKTEVSTVS-STQVGPN--------------------------------
8=opsin,        ------------------------------------------------------------
9==             DDGS--ELSSASKTEVSSV---SSVSPA--------------------------------
10==            DDGS--ELSSASKTEVSSV---SSVSPA--------------------------------
11==            DDGS--EASTTSRTEVSSVS-NSSVAPA--------------------------------
12==            DDGS--EVST-SRTEVSSVS-NSSVSPA--------------------------------
13==            GKAS--PGTPGPHADVTAAGLRNKVMPAHPV-----------------------------
14==            EKAP--ESSAVASTSTTQEP--QQTTAA--------------------------------
15==            EKAP--ESRAAISTSTTQEQ--QQTTAA--------------------------------
16==            EKSG--EISSAQST-TTQEQ--QQTTAA--------------------------------
17==            EKSG--EASSAQST-TTQEQ-TQQTSAA--------------------------------
18==            ETKS--NDDSQSNSTVAQDK-A--------------------------------------
19==            DPND--VEENQSSNTQTQEK-S--------------------------------------
20==            DDGK--SSDAQSQA-TASEA-ESKA-----------------------------------
21==            DDGK--SSDAQSQA-TASEA-ESKA-----------------------------------
22==            DDGK--SSEAQSQA-TTSEA-ESKA-----------------------------------
23==            DEPK--PDAPASDTETTSEA-DSKA-----------------------------------
24==            DEPK--PDAPPSDTETTSEA-ESKD-----------------------------------
25==            EPSS--DAVSTTSGTTTVTD-NEKSNA---------------------------------
26==            ESGS--DVKSEASATTTMEE-KPKIPEA--------------------------------
27==            EDAN--DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP
28==            EDDK--DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP
29==            ------KLSAAGMHEALKLAERPERPEF------------VLQNADY-------------
30==            ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH-------------
31=p            ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH-------------
32==            ------------------------------------------------------------
33=p            ------------------------------------------------------------
34==            ------------------------------------------------------------
35=p            ------------------------------------------------------------
36==            ------A---------------PQ------------------------------------
                                                                            

1==             ---------------------------------------------------------
2==             ---------------------------------------------------------
3==             ---------------------------------------------------------
4=p             ---------------------------------------------------------
5=p             ---------------------------------------------------------
6==             ---------------------------------------------------------
7==             ---------------------------------------------------------
8=opsin,        ---------------------------------------------------------
9==             ---------------------------------------------------------
10==            ---------------------------------------------------------
11==            ---------------------------------------------------------
12==            ---------------------------------------------------------
13==            ---------------------------------------------------------
14==            ---------------------------------------------------------
15==            ---------------------------------------------------------
16==            ---------------------------------------------------------
17==            ---------------------------------------------------------
18==            ---------------------------------------------------------
19==            ---------------------------------------------------------
20==            ---------------------------------------------------------
21==            ---------------------------------------------------------
22==            ---------------------------------------------------------
23==            ---------------------------------------------------------
24==            ---------------------------------------------------------
25==            ---------------------------------------------------------
26==            ---------------------------------------------------------
27==            QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
28==            QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
29==            --------------------------------------------CRKKGHDS-----
30==            --------------------------------------------CGKKGHDT-----
31=p            --------------------------------------------CGKKGHDT-----
32==            ---------------------------------------------------------
33=p            ---------------------------------------------------------
34==            ---------------------------------------------------------
35=p            ---------------------------------------------------------
36==            ---------------------------------------------------------