Mercurial > repos > rnateam > mafft
view test-data/mafft_auto_linsi.aln @ 15:bf28a8cff401 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
| author | bgruening |
|---|---|
| date | Wed, 20 Mar 2024 07:34:52 +0000 |
| parents | |
| children |
line wrap: on
line source
> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] M------------------NGTE-G------DNFYVPF----SNKTGLARSPYEYPQY-- --------------------------------------------------YLAEPW---- ---------------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLA MANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERY IVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQCSCG PDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEKEVTRMVVLMVIGFLVCWVPYAS VAFYIFT---HQGS-DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTL----- CC-----GKNPLGDDE-SGA-STSK-TEVSSVS-TSPVSPA------------------- ------------------------------------------------------------ --------------- > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] M------------------NGTE-G------PNFYVPF----SNITGVVRSPFEQPQY-- --------------------------------------------------YLAEPW---- ---------------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA VADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERY VVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQCSCG IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------TTQKAEKEVTRMVIIMVIFFLICWLPYAS VAMYIFT---HQGS-NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL----- CC-----GKNPLGDDE-ASA-TASK-TETSQVA-PA------------------------ ------------------------------------------------------------ --------------- > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 M------------------NGTE-G------INFYVPM----SNKTGVVRSPFEYPQY-- --------------------------------------------------YLAEPW---- ---------------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLA VADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERY IVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQCSCG PDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAV VAFWIFT---NKGA-DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI----- CC-----GKNPFGDEDVSSTVSQSK-TEVSSVS-SSQVSPA------------------- ------------------------------------------------------------ --------------- > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish M------------------NGTE-G------KNFYVPM----SNRTGLVRSPFEYPQY-- --------------------------------------------------YLAEPW---- ---------------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLA VAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY IVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQCSCG PDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEREVTKMVILMVFGFLIAWTPYAT VAAWIFF---NKGA-DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI----- FC-----GKNPLGDDE-SSTVSTSK-TEVSSVS-PA------------------------ ------------------------------------------------------------ --------------- > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish M------------------NGTE-G------NNFYVPL----SNRTGLVRSPFEYPQY-- --------------------------------------------------YLAEPW---- ---------------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLA VAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY IVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQCSCG PDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEREVTKMVILMVLGFLVAWTPYAT VAAWIFF---NKGA-AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL----- FC-----GKNPLGDEE-SSTVSTSK-TEVSSVS-PA------------------------ ------------------------------------------------------------ --------------- > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- M------------------KQVP-EFH----EDFYIPIPL--DINNLSAYSPFLVPQD-- --------------------------------------------------HLGNQG---- ---------------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLS IANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERW LVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQCSCG PDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEREVTKMVVVMVLGFLVCWAPYAS FSLWIVS---HRGE-EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV----- C------GKN-IEEDE-AST-SSQV-TQVSSVA-PEK----------------------- ------------------------------------------------------------ --------------- > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] M------------------RKMS-E------EEFYL-------FKNISSVGPWDGPQY-- --------------------------------------------------HIAPVW---- ---------------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS FGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERY IVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQCSCG PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAA FAMYMVN---NRNH-GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV----- C------GKA-MTDES-DTC-SSQK-TEVSTVS-STQVGPN------------------- ------------------------------------------------------------ --------------- > 8=opsin, greensensitive human (fragment) S07060 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW LVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEKEVTRMVVVMVLAFC-------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ --------------- > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY-- --------------------------------------------------HIAPRW---- ---------------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLA VADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW MVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAF FACFAAA---NPGY-PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF----- -------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA------------------- ------------------------------------------------------------ --------------- > 10== Z68193 1 human Red Opsin <>[] MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY-- --------------------------------------------------HIAPRW---- ---------------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLA VADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW LVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLKTSCG PDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTF FACFAAA---NPGY-AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF----- -------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA------------------- ------------------------------------------------------------ --------------- > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] MTEAWNVAVFAARRSRDD-DDTTRG------SVFTY-------TNTNNTRGPFEGPNY-- --------------------------------------------------HIAPRW---- ---------------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLA FVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERW FVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLKTSCG PDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEREVSRMVVVMIVAFCICWGPYAS FVSFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF----- -------GKK-VDDGS-EAS-TTSR-TEVSSVS-NSSVAPA------------------- ------------------------------------------------------------ --------------- > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] MA-AWE-AAFAARRRHEE-EDTTRD------SVFTY-------TNSNNTRGPFEGPNY-- --------------------------------------------------HIAPRW---- ---------------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLA VADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERW FVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLKTSCG PDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTF FACFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF----- -------GKK-VDDGS-EVS-T-SR-TEVSSVS-NSSVSPA------------------- ------------------------------------------------------------ --------------- > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] -----------------------MS------SNSSQ-------APPNGTPGPFDGPQW-- -------------------------------------------------PYQAPQS---- ---------------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLA VADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERY VVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLRTSCG PNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------TTQRAEREVTRMVIVMVMAFLLCWLPYST FALVVAT---HKGI-IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML----- CCGYQ--PQR-TGKAS-PGT-PGPH-ADVTAAGLRNKVMPAHPV---------------- ------------------------------------------------------------ --------------- > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] M------------------ESGNVS------SSLF------------GNVSTALRPEA-- -------------------------RLSA---E---TRLLGWNVPPEELRHIPEHWLTYP ----------EPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLA FCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRF NVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYLTSCT FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVES ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS-------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGV MSLIGAF---GDKT-LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWL-- AL-----NEK-APESS-AVA-STST-TQEPQQT--------------------------- TAA--------------------------------------------------------- --------------- > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 M------------------EYHNVS------SVL-------------GNVSSVLRPDA-- -------------------------RLSA---E---SRLLGWNVPPDELRHIPEHWLIYP ----------EPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLA FCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRY NVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYLTSCT FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDS ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS-------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGV MSLIGAF---GDKT-LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWL-- AI-----SEK-APESR-AAI-STST-TQEQQQT--------------------------- TAA--------------------------------------------------------- --------------- > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] M------------------EPLC------------------------NASEPPLRPEA-- -------------------------R-SSGNGD---LQFLGWNVPPDQIQYIPEHWLTQL ----------EPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLA VFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS FDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVES ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV MSLIGAF---GDKS-LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWL-- GV-----NEK-SGEIS-SAQ-STTT-QEQQQTT--------------------------- AA---------------------------------------------------------- --------------- > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 M------------------DALC------------------------NASEPPLRPEA-- -------------------------RMSSGSDE---LQFLGWNVPPDQIQYIPEHWLTQL ----------EPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLA VFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS FDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVES ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV MSLIGAF---GDKS-LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWL-- GV-----NEK-SGEAS-SAQ-STTT-QEQTQQT--------------------------- SAA--------------------------------------------------------- --------------- > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 M------------------TNAT-------------------------------GPQMAY -------YG--------------AASMDFGYPE---GVSIVDFVRPEIKPYVHQHWYNYP ----------PVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLA LSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRY NIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGILDSCS YDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVST ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS--------NEADAQRAEIRIAKTALVNVSLWFICWTPYAL ISLKGVM---GDTS-GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWF-- CV-----HET-ETKSN-DDS-QSNS-TVAQDKA--------------------------- ------------------------------------------------------------ --------------- > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 M------------------ANVT-------------------------------GPQMAF -------YG--------------SGAATFGYPE---GMTVADFVPDRVKHMVLDHWYNYP ----------PVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLA LSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRY NIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGILDSCS YDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTN ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS--------NEAETQRAEIRIAKTALVNVSLWFICWTPYAA ITIQGLL---GNAE-GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWF-- CV-----HEK-DPNDV-EEN-QSSN-TQTQEKS--------------------------- ------------------------------------------------------------ --------------- > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] M------------------ESFA-------------------------VAAAQLGPHF-- ------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP ----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY QVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNLTSCG IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA------------------- ------------------------------------------------------------ --------------- > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] M------------------ESFA-------------------------VAAAQLGPHF-- ------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP ----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY QVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNLTSCG IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA------------------- ------------------------------------------------------------ --------------- > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' M------------------DSFA-------------------------AVATQLGPQF-- ------------------------AAPS--------NGSVVDKVTPDMAHLISPYWDQFP ----------AMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY QVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNLTSCG IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS--------SEDADKSAEGKLAKVALVTISLWFMAWTPYLV INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- VF-----GKV-DDGKS-SEA-QSQA-TTSEAES------KA------------------- ------------------------------------------------------------ --------------- > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] M------------------ERSH--------------------LPETPFDLAHSGPRF-- ------------------------QAQSSG------NGSVLDNVLPDMAHLVNPYWSRFA ----------PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRY NVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNLTACS IDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKS ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS--------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLV ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMC-- VF-----GNT-DEPKP-DAP-ASDTETTSEADS------KA------------------- ------------------------------------------------------------ --------------- > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 M------------------ERSL--------------------LPEPPLAMALLGPRF-- ------------------------EAQTGG------NRSVLDNVLPDMAPLVNPHWSRFA ----------PMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRY NVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNLTACS IDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKS ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS--------SEDCDKSAENKLAKVALTTISLWFMAWTPYLI ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMC-- VC-----GTT-DEPKP-DAP-PSDTETTSEAES------KD------------------- ------------------------------------------------------------ --------------- > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] M-------------------------------------------------IAVSGPSY-- ------------------------EAFSYGGQARFNNQTVVDKVPPDMLHLIDANWYQYP ----------PLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLA ISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRY NVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNMTACG TDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVAS ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRS--------SENQNTSAECKLAKVALMTISLWFMAWTPYLV INFSGIF---NL-V-KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSL-- AC-----AA--EPSSD-AVS-TTSG-TTTVTDN------EK------------------S NA---------------------------------------------------------- --------------- > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] M------------------ANQL---------------------------------SY-- ------------------------SSLGWPYQP---NASVVDTMPKEMLYMIHEHWYAFP ----------PMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLA FSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRY NVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNLTSCT VDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVAS ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRA-------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLI ISWAGVF---SSGT-RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSL-- AC-----GSG-ESGSD-VKS-EASA-TTTMEEK------PKIPEA--------------- ------------------------------------------------------------ --------------- > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] M------------------VEST----------------------TLVNQTWWYNPTV-- --------------------------------------------------DIHPHWAKFD ----------PIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLA MSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRY NVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGILTSCS FDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKE ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRK---------AQAGASAEMKLAKISMVIITQFMLSWSPYAI IALLAQF---GPAE-WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLT CCQFD------EKECE-DAN-DAEE-EVVASER----GGESRDAAQMKEMMAMMQKMQAQ QAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAP QGAPPQGVDNQAYQA > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] M------------------GRDL-----------------------RDNETWWYNPSI-- --------------------------------------------------VVHPHWREFD ----------QVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLA FSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRY NVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVLCNCS FDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKE ------------------------------------------------------------ ------------------------------------------------------------ -----------------LRK---------AQAGANAEMRLAKISIVIVSQFLLSWSPYAV VALLAQF---GPLE-WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLT CCQFD------DKETE-DDK-DAET-EIPAGES--SDAAPSADAAQMKEMMAMMQKMQQQ QAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP----- -AAPPQGVDNQAYQA > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra MM-----------------DVNSSGR-----PDLYGHLRS-FLLPEVGRGLPDLSPDG-- ----------GADPVAGSWAP---HLLS------------------EVTASPAPTWDAPP DNASGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLA LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- -------FPRVEPDSVIALNG--------------------------------------- -----------------------IVKLQKE-------------------VEECAN----- -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL LSTARPFICGTSCS-CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL----- QCQYRNINRK-------LSAAGMHE-ALKLAER------PERPEFVL------------Q NADY-------------------------------------------------------- -------CRKKGHDS > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] M----------------------------------------------------------- --------------------P---HLLS--------GFL-------EVTASPAPTWDAPP DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- -------FPRVQPESVISLNG--------------------------------------- -----------------------VVKLQKE-------------------VEECAN----- -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL----- QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q NSDH-------------------------------------------------------- -------CGKKGHDT > 31=p A47425 serotonin receptor 5HT-7 - rat M----------------------------------------------------------- --------------------P---HLLS--------GFL-------EVTASPAPTWDAPP DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- -------FPRVQPESVISLNG--------------------------------------- -----------------------VVKLQKE-------------------VEECAN----- -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL----- QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q NSDH-------------------------------------------------------- -------CGKKGHDT > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] M------------------DVLSPG-------------------------------QG-- ------------------------NNTTSPPAPF-E---------------TGGNTTGIS ----------DVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADT RHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC----------------- -------------------------------ANGAVRQGDDGAALEVIEVHRVGNSKEHL PLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI VALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII----- KCKFCRQ----------------------------------------------------- ------------------------------------------------------------ --------------- > 33=p A35181 serotonin receptor class 1A - rat M------------------DVFSFG-------------------------------QG-- ------------------------NNTTASQEPF-G---------------TGGNVTSIS ----------DVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGT SLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC----------------- -------------------------------TNGAVRQGDDEATLEVIEVHRVGNSKEHL PLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI VALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII----- KCKFCRR----------------------------------------------------- ------------------------------------------------------------ --------------- > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT ----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK-- -----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL----- FGKYRRGHR--------------------------------------------------- ------------------------------------------------------------ --------------- > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT ----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK-- -----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL----- FGKYRRGHR--------------------------------------------------- ------------------------------------------------------------ --------------- > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi M------------------EGAE-GQEELDWEALYLRLPL-------------------- ------------------------QNCSWNSTGWEPNW--------NVTVVPNTTWWQAS -----APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLA VADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRY WAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVS QDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARGGVGP -------PP-----------------------------------------------VPAG GALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANGLEAD PPTTGYGAVAAAYYPSLVRRK------PKEAADSKRERKAAKTLAIITGAFVACWLPFFV LAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL----- CGRRVRRRRA-----------------------------PQ------------------- ------------------------------------------------------------ ---------------