Mercurial > repos > rnateam > mirdeep2

annotate test-data/cel_cluster.fa @ 2:d0faf81ccc99 draft

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Uploaded
author rnateam
date Wed, 04 Feb 2015 13:04:49 -0500
parents eaac585f172a
children
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rev   line source
0
eaac585f172a Imported from capsule None
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1 >chrII:11534525-11540624
eaac585f172a Imported from capsule None
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2 tccaaaatattagaggccccacgaaaaggggagcagaacgaaaaggggat
eaac585f172a Imported from capsule None
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diff changeset
3 ctgcaaaaaggggatctgcgaaaaggggagatacgaaaaggggagatacg
eaac585f172a Imported from capsule None
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diff changeset
4 aaaaggggagcaacgaaaaggggatctggcactgtgccaaacgctatttt
eaac585f172a Imported from capsule None
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parents:
diff changeset
5 tctcaaagaaaacaatacaacgatgctccgatgttacgcgtcgcgtgttg
eaac585f172a Imported from capsule None
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parents:
diff changeset
6 ttaagcgtatcttctagaagaaaatttcaaaaatcaacgtgcgttgcgtg
eaac585f172a Imported from capsule None
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parents:
diff changeset
7 agaaaaattgcgttttgtgcgtttggcacagtgccagctccccttttcgt
eaac585f172a Imported from capsule None
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parents:
diff changeset
8 tgctccccttttcgtatctccccttttcgtatctccccttttcgcagatc
eaac585f172a Imported from capsule None
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parents:
diff changeset
9 ccctttttgcagatccccttttcgttctgctcccctcgtggggcctcaaa
eaac585f172a Imported from capsule None
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parents:
diff changeset
10 taatattgtcaatggagcgcagttgcgcacaccgaaatacgcacgaaatt
eaac585f172a Imported from capsule None
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diff changeset
11 tgaaattggcaggcctagaaagtctggatttaaaatatttatgcatatta
eaac585f172a Imported from capsule None
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parents:
diff changeset
12 acctgagtttcggcatgtttagataaatttagattaaaatttattaaata
eaac585f172a Imported from capsule None
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13 aaaatatttaaaatttattaaattcaacattatctttaattttacagaaa
eaac585f172a Imported from capsule None
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diff changeset
14 taaaaaccaaaaaaccaacgaagtgtaacttttcgacaataaatatttat
eaac585f172a Imported from capsule None
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parents:
diff changeset
15 aaattattcaattaattggaaatctatttatcacatctcatcgtgaacaa
eaac585f172a Imported from capsule None
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diff changeset
16 gcacatggctaaacaatgcctcgactttatccacccatcctggatttttc
eaac585f172a Imported from capsule None
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parents:
diff changeset
17 ctgttgaaaatcttcaaatccttcatagtctgctcaattgccttaacagc
eaac585f172a Imported from capsule None
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diff changeset
18 cttttcccttttcacatccttcgtcaattcctcaaccatcgcctctacaa
eaac585f172a Imported from capsule None
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parents:
diff changeset
19 gttgtgatcgtgaggccccttcaacgaatttcttgtccaatacatctctg
eaac585f172a Imported from capsule None
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parents:
diff changeset
20 agctgaaaaataagtccctttattcatgtgcaccacctgccactcattca
eaac585f172a Imported from capsule None
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parents:
diff changeset
21 ttttagatcctaatcctgtatttctctctctctctcactaatcgtcccgt
eaac585f172a Imported from capsule None
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22 catatctgacccactataatgaggggaccaccactttgccccagatttcg
eaac585f172a Imported from capsule None
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diff changeset
23 taatgagccaacatacactaggccctgttctagcacccccattgtgcatg
eaac585f172a Imported from capsule None
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diff changeset
24 ggagacacatcgtctgttggttcgggtcagctgagatgacgtggcagatg
eaac585f172a Imported from capsule None
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parents:
diff changeset
25 acgtcatgtttgttctctagcagatccctatcgtaaaataccgttctttg
eaac585f172a Imported from capsule None
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parents:
diff changeset
26 ttcgtttatgagcacttcttgggaaacaagaagaatattagagaatattg
eaac585f172a Imported from capsule None
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diff changeset
27 gattttaggaaatttcttgaccctaataatatgtatctcatggggctaat
eaac585f172a Imported from capsule None
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parents:
diff changeset
28 tacgaaagatttagagctcactaaagcagatgtggataagctggaactat
eaac585f172a Imported from capsule None
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parents:
diff changeset
29 agtcaattctcacgagatattattattagcttactcgttgaatttgatgc
eaac585f172a Imported from capsule None
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parents:
diff changeset
30 cgtgttaggtagaagccgagaacacgatgaaccttggaagttatgtagtc
eaac585f172a Imported from capsule None
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parents:
diff changeset
31 gagttttctggaagaaaaagtatatatagtttgataaaaagttacgtcat
eaac585f172a Imported from capsule None
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diff changeset
32 aagttattggtcccgagtgtgtacactagaaacttgcgcaatcagttggt
eaac585f172a Imported from capsule None
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33 caggtggtctaggacctttacatgtaatataattcattggtttgttgctc
eaac585f172a Imported from capsule None
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diff changeset
34 tagatctcaaagaatatggttttcctgctgagaaacaaaatttttttttc
eaac585f172a Imported from capsule None
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diff changeset
35 aaatgttcgcgatattatacgatttttttgcgctgaaaaatacggtatcc
eaac585f172a Imported from capsule None
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diff changeset
36 ggactcgacacgacagtttttcaataaattcggaaaggtacatatgcgcc
eaac585f172a Imported from capsule None
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parents:
diff changeset
37 tttgaagagtactgtaattttaaacatttgttgatgcagtaaatattctc
eaac585f172a Imported from capsule None
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diff changeset
38 acggatttttagaggtttttttttgaatatttatacagttatattagagt
eaac585f172a Imported from capsule None
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diff changeset
39 taaaaaaataaatctatttttatcgaaatttatgaaaaatctactcccca
eaac585f172a Imported from capsule None
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parents:
diff changeset
40 gaaacaaagtttgaatttacttaaaatgtatgtgcgcctttttaaattca
eaac585f172a Imported from capsule None
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parents:
diff changeset
41 acaaaaatttatcaaattttgtctttttaatcacttttacttttttttcg
eaac585f172a Imported from capsule None
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parents:
diff changeset
42 aaaaaaaaaaaaactttaaaaacaccgaaaattaaaatttttaattaccg
eaac585f172a Imported from capsule None
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parents:
diff changeset
43 taatcctttaaaggcgcacacctctttttcgcaatcataaaaatttacag
eaac585f172a Imported from capsule None
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parents:
diff changeset
44 gcacagaatttcctactgtaacgtgttttctcgatagaaacgtttctcca
eaac585f172a Imported from capsule None
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parents:
diff changeset
45 aatcgaaatttttattagcaatcatcaattcgtcatgtttctgtgctgga
eaac585f172a Imported from capsule None
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diff changeset
46 gcacattgttatgcagtgctcatgaatattcacagttgaaaatcgaattt
eaac585f172a Imported from capsule None
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diff changeset
47 ttttttcttatttttattaacttctctcctcactcaagtgcaatctcatt
eaac585f172a Imported from capsule None
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parents:
diff changeset
48 tcggcggaacgatgaaagcggactcgtttgaaacggattacactgctggc
eaac585f172a Imported from capsule None
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diff changeset
49 tggctccatcttttttatttctggtttttttcccgacacgggaggtcatc
eaac585f172a Imported from capsule None
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parents:
diff changeset
50 cgtccacgtcttcaatcttattcgcttctccttctatctatctctcttcc
eaac585f172a Imported from capsule None
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parents:
diff changeset
51 aaaaaaatggaacagattgtccgccttctactttccgcatgcgcctattc
eaac585f172a Imported from capsule None
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diff changeset
52 tagacatcgagaagaagcgagagaatccgaaaaactccgccgtccggcgc
eaac585f172a Imported from capsule None
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parents:
diff changeset
53 ctagcgttcatcccgtcgcatccaatttccttcacccctgtctccagtct
eaac585f172a Imported from capsule None
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diff changeset
54 ctaatctgtgtttcccagaccttctccttcttcttctcccctctttcttc
eaac585f172a Imported from capsule None
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diff changeset
55 cctttcttttctacgattcctagacctgcccggttgaccatcgggcccac
eaac585f172a Imported from capsule None
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diff changeset
56 catttatcgagcgcgtccgtctgttcgttgctgtgagcgcgcgcgcgcga
eaac585f172a Imported from capsule None
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parents:
diff changeset
57 gcgcacactgcacaccatttgaccgcaacgagccgagagagtgtgtgaaa
eaac585f172a Imported from capsule None
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parents:
diff changeset
58 tgaagagacgccgagtggacacgttgctctacaccaaacgcgctacacca
eaac585f172a Imported from capsule None
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parents:
diff changeset
59 aatgggcggagacccaatggtgcaccaagtcagcagtataaaaggaatgg
eaac585f172a Imported from capsule None
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parents:
diff changeset
60 aaatggtccattcagtcatcagttgtttttttattttctcttttctccca
eaac585f172a Imported from capsule None
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parents:
diff changeset
61 tcactttctcccttcttcccctctcctaatttccattcccaactattatt
eaac585f172a Imported from capsule None
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parents:
diff changeset
62 ctcggatcagatcgagccattgctggtttcttccacagtggtactttcca
eaac585f172a Imported from capsule None
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parents:
diff changeset
63 ttagaactatcaccgggtggaaactagcagtggctcgatcttttccactt
eaac585f172a Imported from capsule None
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parents:
diff changeset
64 gctccaccgctgtcggggaaccgcgccaattttcgcttcagtgctagacc
eaac585f172a Imported from capsule None
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parents:
diff changeset
65 atccaaagtgtctatcaccgggtgaaaattcgcatgggtccccgacgcgg
eaac585f172a Imported from capsule None
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parents:
diff changeset
66 aaagataaaatatcttaaaatcgattctagaaacccttggaccagtgtgg
eaac585f172a Imported from capsule None
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parents:
diff changeset
67 gtgtccgttgcggtgctacattctctaatctgtatcaccgggtgaacact
eaac585f172a Imported from capsule None
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parents:
diff changeset
68 tgcagtggtcctcgtggtttctctgtgagccaggtcctgttccggttttt
eaac585f172a Imported from capsule None
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parents:
diff changeset
69 tccgtggtgataacgcatccaaaagtctctatcaccgggagaaaaactgg
eaac585f172a Imported from capsule None
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parents:
diff changeset
70 agtaggacctgtgactcattccgatttctggagttttcccctacattcta
eaac585f172a Imported from capsule None
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parents:
diff changeset
71 ccattcagctactgattattgaattcctgatataccgagagcccagctga
eaac585f172a Imported from capsule None
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parents:
diff changeset
72 tttcgtcttggtaataagctcgtcattgagattatcaccgggtgtaaatc
eaac585f172a Imported from capsule None
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parents:
diff changeset
73 agcttggctctggtgtctccgaacctcctgtccgcacctcagtggatgta
eaac585f172a Imported from capsule None
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parents:
diff changeset
74 tgccatgatgataagatatcagaaatcctatcaccgggtgtacatcagct
eaac585f172a Imported from capsule None
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parents:
diff changeset
75 aaggtgcgggtacaggtgcatttgatatcaaggtgagttatttttaagtg
eaac585f172a Imported from capsule None
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parents:
diff changeset
76 ggtcccagagaccttggtggtttttctctgcagtgatagatacttctaac
eaac585f172a Imported from capsule None
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parents:
diff changeset
77 aactcgctatcaccgggtgaaaaatcacctaggtctggagcctcctgctc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
78 tttttttgctgtttttaaacttaaacttaaaactaacactttatcaaaat
eaac585f172a Imported from capsule None
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parents:
diff changeset
79 aaagtcttccaaaatcttttttctgatctgccggaagactttccatgaat
eaac585f172a Imported from capsule None
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parents:
diff changeset
80 ttgtccaaaactcgttgcactttatcctcgtcgtaatcatttgacaccat
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
81 atctttggataactagaataattgaacattggtttaaaaaaattctctca
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
82 aaaaaaaaatcacaaacctgatgaattttagcctcatctatagcagtatc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
83 tgcgagaagaatcgtaagattcattgataattctatatattttccaataa
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
84 ttttatccgaagctggatgtgaagtttctacagtacctccgtggcataat
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
85 actacaatggaagcaaaaagagcgacaattaggatcgtcattttagtgga
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
86 gaatgatgaattgacccggctctttgggggttggaggattcattttcccc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
87 ttcaacaggtgctcaaataattaaagagaatagaaccgacgatatatggg
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
88 tcaaatgtttatacagttgtgctactaaacgtattgttacacgcgttatt
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
89 aataattagaattagaattatatcgttttgtacggattgagaatcccatt
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
90 tgggtcgaaaatgttcttgagcttctttgtcaaaagtcgttcttcaggat
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
91 cttttccgaatgtggagtacggtagcttcagttgaccgattccatgttca
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
92 gctgaaattgacccgccgtgatcgacaacccattcgtagaggaagggata
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
93 gagcctggaatttgaaattattaatagaattaaaattttataaaaaagaa
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
94 aaatctcgaaacttacaatttttcaagttcttcattgtgtttttcagatg
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
95 taatatttaaatgagtgtttccatctcccaaatgtccataagtgacaatt
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
96 cttttagccaaagaaccacatcgttccttcatcacattcgtcaattcata
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
97 ataattttccaatggtaaagaaacatcatgcttatagacatatccatctc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
98 tggtaaccgccaatggtgcactttctctcaattgccacatcttcgtagct
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
99 tctgcagaagatccagcgagcactccgtcgataatcagattttttgagag
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
100 gcattcatccaaaaatgcgctcattttctccatatcgtgatcttcattgg
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
101 atcctgatgtttcgacaaggatcgagaatggggttggagcattcagtact
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
102 gggtgcaatcctagattcgttttcaaacattccatcgtagcatcgtcgag
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
103 aagttcgaaggaggaaaggatttcagtgaggctggattttgcaagcttca
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
104 gtacttcgcagcattttttgaaggattcgatgcctgaaaaaaattagaaa
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
105 ttgaaaaatttgaacccattatataaatattcaacctaccaagcatcgca
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
106 ctttgtacacttttcggtttaggaaccgcagtcattgtgacgcttgtgat
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
107 aacacccaactgcccttcacttcccaagaataggtgtggagtgtgcaaag
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
108 ttgtgttgtccttccgaatgcttgatcccaaatgtagaacagttccatgt
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
109 tcatcgggaagaaccaccgtgagcccgagaagatgtgcgtgaagacttcc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
110 gtatcgaatcaaccgaatccctcctgcacacgtggcaatatttcctccaa
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
111 tctgacaggatcctttggctccgagatcaaaaggcatcatatatccgagt
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
112 tttgcaagtttgttgtccaagtcttccagaataaaaccagaatcacactt
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
113 gagaattcccattgtgtcgtcgaaagagaattgcttgttgattttattca
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
114 ttgatataacaacttcatcatgtactggaattgatccaccaacgagtcct
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
115 gtattccctccttgtgggactactgccaatttgttcttggagcaatacgc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
116 caatattgcagaaacctcttcggtgctcttcgggtagaggacgacactgc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
117 caggacctggaaattaaaacatttaatatttaaagtacctatttaatatt
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
118 aaataaacctaatcttaaaatacaaatacctttaaattggcctgtccaat
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
119 ctgtagtatgatttgtaatatcgtccttcttcactgcatcttgcccgaga
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
120 aaattctcaaatgccattaaatccgactgcatcacttttgcaaatccttc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
121 atgtctggcggcaagaactgctgcgtagcttctagttggtcttctgattc
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
122 gtggcaagattttcagaaacatctgaattcagaaacttttcaaaaaataa
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
123 cttgaaacttcaaaagaaatagtaggagacaaagctcggctaggtgaccg
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
124
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
125 >chrIII:2172325-2172669
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
126 CAGGCAGTCAGTCAGTCTCTCTCCACTCACATTCAGTCAGTCAGTGACCA
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
127 TCACCAGGTTGTGTGTGAGCCCCTTCCATTATTCTTCTGAACCCCCCTCC
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
128 CAACGCGGGAAGACTCGCCGGCAATGACACTGGTTATCTTTTCCATCGTG
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
129 GAATGCCCCCCATTGATTTTTTCCCCTTTTCGGGGGGAAAAAATTGGAAA
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
130 CGAGAAAGGTATCGGGTGTCATAGCCGGCGTGATCATCTTCCTCAAGTAT
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
131 TCCTCTGCTGATTTCGATATTCGGAGGAGCTCGGAGGCTGTTCAGCTGTA
eaac585f172a Imported from capsule None
rnateam
parents:
diff changeset
132 AAATTGGTTGATTAAGCTCAAAAATCGGCGTTAACGCGGCTTTCC