Mercurial > repos > rnateam > mirdeep2

comparison tool_dependencies.xml @ 1:b21be04f52e4 draft

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Uploaded
author rnateam
date Wed, 04 Feb 2015 10:44:44 -0500
parents eaac585f172a
children d0faf81ccc99
comparison
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0:eaac585f172a 1:b21be04f52e4
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="perl" version="5.18.1"> 3 <package name="perl" version="5.18.1">
4 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bowtie" version="0.12.7"> 6 <package name="bowtie" version="0.12.7">
7 <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="vienna_rna" version="1.8.5"> 9 <package name="vienna_rna" version="1.8.5">
10 <repository changeset_revision="54e961ee33d4" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="6757330f89cd" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
11 </package> 11 </package>
12 <package name="pdf_api2" version="2.023"> 12 <package name="pdf_api2" version="2.023">
13 <repository changeset_revision="b9b7fadfdb69" name="package_perl_pdf_api2_2_023" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 13 <repository changeset_revision="b9b7fadfdb69" name="package_perl_pdf_api2_2_023" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
14 </package> 14 </package>
15 <package name="randfold" version="2.0"> 15 <package name="randfold" version="2.0">
16 <repository changeset_revision="b34d2c942c79" name="package_randfold_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> 16 <repository changeset_revision="b34d2c942c79" name="package_randfold_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
17 </package> 17 </package>
18 <package name="mirdeep2_quantifier" version="2.0"> 18 <package name="mirdeep2_quantifier" version="2.0">
19 <repository changeset_revision="2c039fc73f1f" name="mirdeep2_quantifier" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" /> 19 <repository changeset_revision="2c039fc73f1f" name="mirdeep2_quantifier" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
20 </package> 20 </package>
21 <package name="mirdeep2" version="2.0"> 21 <package name="mirdeep2" version="2.0">
22 <install version="1.0"> 22 <install version="1.0">
23 <actions> 23 <actions>
24 <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/miRDeep2/miRDeep2.tar.gz</action> 24 <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/miRDeep2/miRDeep2.tar.gz</action>
25 <action type="move_directory_files"> 25 <action type="move_directory_files">
26 <source_directory>.</source_directory> 26 <source_directory>.</source_directory>
27 <destination_directory>$INSTALL_DIR</destination_directory> 27 <destination_directory>$INSTALL_DIR</destination_directory>
28 </action> 28 </action>
29 <action type="set_environment"> 29 <action type="set_environment">
30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> 30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
31 </action> 31 </action>
32 </actions> 32 </actions>
33 </install> 33 </install>
34 <readme> 34 <readme>
35 35