Mercurial > repos > rnateam > mirdeep2

comparison test-data/mature_ref_other_species.fa @ 0:eaac585f172a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Imported from capsule None
author rnateam
date Tue, 27 Jan 2015 09:06:24 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:eaac585f172a
1 >cbr-let-7
2 TGAGGTAGTAGGTTGTATAGTT
3 >cbr-lin-4
4 TCCCTGAGACCTCAAGTGTGA
5 >cbr-miR-1
6 TGGAATGTAAAGAAGTATGTA
7 >cbr-miR-34
8 AGGCAGTGTGGTTAGCTGGTTG
9 >cbr-miR-42
10 CACCGGGTTAACATCTACAG
11 >cbr-miR-43
12 TATCACAGTTTACTTGCTGTCGC
13 >cbr-miR-44
14 TGACTAGAGACACATTCAGCT
15 >cbr-miR-45
16 TGACTAGAGACACATTCAGCT
17 >cbr-miR-46
18 TGTCATGGAGTCGCTCTCTTCA
19 >cbr-miR-47
20 TGTCATGGAGGCGCTCTCTTCA
21 >cbr-miR-48
22 TGAGGTAGGCTCAGTAGATGCGA
23 >cbr-miR-49
24 AAGCACCACGAGAAGCTGCAGA
25 >cbr-miR-50
26 TGATATGTCTGATATTCTTGGGTT
27 >cbr-miR-52
28 CACCCGTACATATGTTTCCGTGCT
29 >cbr-miR-57
30 TACCCTGTAGATCGAGCTGTGTGT
31 >cbr-miR-58
32 TGAGATCGTTCAGTACGGCAAT
33 >cbr-miR-60
34 TATTATGCACATTTTCTAGTCCA
35 >cbr-miR-67
36 TCACAACCTCCTAGAAAGAGTAGA
37 >cbr-miR-71
38 TGAAAGACATGGGTAGTGA
39 >cbr-miR-73
40 TGGCAAGATGTTGGCAGTTCAGT
41 >cbr-miR-74
42 TGGCAAGAAATGGCAGTCTAGA
43 >cbr-miR-75
44 TTAAAGCTACCAACCGCCTTCA
45 >cbr-miR-77
46 TTCATCAGGCCATAGCTGTCCA
47 >cbr-miR-79
48 ATAAAGCTAGGTTACCAAAGCT
49 >cbr-miR-80
50 TGAGATCATTAGTTGAAAGCCGA
51 >cbr-miR-81
52 TGAGATCATCGTGAAAGCTAGT
53 >cbr-miR-82
54 TGAGATCATCGTGAAAGCCAGT
55 >cbr-miR-85
56 TACAAAGTATTTGAAAAGGCGTGC
57 >cbr-miR-86
58 TAAGTGAATGCTTTGCCACAGTC
59 >cbr-miR-87
60 GTGAGCAAAGTTTCAGGTGT
61 >cbr-miR-90
62 TGATATGTTGTTTGAATGCCCC
63 >cbr-miR-124
64 TAAGGCACGCGGTGAATGCCA
65 >cbr-miR-228
66 AATGGCACTGCATGAATTCACGG
67 >cbr-miR-230
68 GTATTAGTTGTGCGACCAGGAAA
69 >cbr-miR-232
70 TAAATGCATCTTAACTGCGGTGA
71 >cbr-miR-233
72 TTGAGCAATGCGCATGTGCGGGA
73 >cbr-miR-234
74 TTATTGCTCGAGAATACCCTT
75 >cbr-miR-236
76 TAATACTGTCAGGTAATGACGCT
77 >cbr-miR-241
78 TGAGGTAGGTGTGAGAAATGA
79 >cbr-miR-244
80 TCTTTGGTTGTACAAAGTGGTATG
81 >cbr-miR-245
82 ATTGGTCCCCTCCAAGTAGCTC
83 >cbr-miR-248
84 TACACGTGCTCGGATAACGCTCA
85 >cbr-miR-250
86 TCACAGTCAACTGTTGGCACGG
87 >cbr-miR-251
88 TTAAGTAGTGGTGCCGCTCTTATT
89 >cbr-miR-252
90 TAAGTAGTAGTGCCGCAGGTAAC
91 >cbr-miR-259
92 AAATCTCATCCTAATCTGGTT
93 >cbr-miR-268
94 GGCAAGAATTAGAAGCAGTTTTGGT
95 >cbr-miR-72
96 AGGCAGATGTTGGCATAGC
97 >cbr-lsy-6
98 TTTTGTATGAGACGCATTCCG
99 >cbr-miR-353
100 CAAGTATCATGTGTTGGTATC
101 >cbr-miR-64
102 CATGACACTGAAGCGTGTACGGA
103 >cbr-miR-231
104 TAAGCTCGTGAACAACAGGCAGGA
105 >cbr-miR-356
106 ATGAGCAACGCGAACAAATCC
107 >cbr-miR-83
108 TAGCACCATATAAATTCAGTGT
109 >cbr-miR-246
110 TTACATGTATTGGGTAGGAGCT
111 >cbr-miR-51
112 TACCCGTAGCTCCTTGCCATGTT
113 >cbr-miR-357
114 AAAATGCCAGTCATTGACGGA
115 >cbr-miR-253
116 CACACCTCACTAACACTAACT
117 >cbr-miR-70
118 TAATACGTGATTGGTGTTCCCAG
119 >cbr-miR-358
120 CAATTGGTATCCTTAGTCGTGG
121 >cbr-miR-61
122 TGACTAGAACCTTGACTCTGCTC
123 >cbr-miR-360
124 TGACCGTAATCCCGTTCACAA
125 >cbr-miR-239a
126 TTTGTACTACAATTAGGTACTGG
127 >cbr-miR-249
128 TCACAGGATTTTTGAGTGTTGC
129 >cbr-miR-240
130 TACTGGCCTCCAAATTTTCGCT
131 >cbr-miR-254
132 TGCAAATCTTTTGCAACTGTATA
133 >cbr-miR-239b
134 TTGTACTGCACAAAAGTACTG
135 >cbr-miR-62
136 TGATATGTAATCTAGCTTACAG
137 >cbr-miR-55
138 TACCCGTATATTTTTCTGCCGAG
139 >cbr-miR-84
140 TGAGGTAGTTTGCAATGCTGTC
141 >cbr-miR-354
142 ACCTTGTTTGTTGCTGCTCCT
143 >cbr-miR-35
144 TCACCGGGTGAAAACTTGCAAG
145 >cbr-miR-36
146 TCACCGGGTGAAAATTCGCAAT
147 >cbr-miR-38
148 TCACCGGGAGACAACCTGGTAT
149 >cbr-miR-39
150 TCACCGGGTGAAAAACGGTTAG
151 >cbr-miR-40
152 TCACCGGGTGTCAATCAGCTAG
153 >cbr-miR-41
154 TCACCGGGTGAAAAACTCCCA
155 >cbr-miR-355
156 TTTGTTTTAGCCTGAGCTATG
157 >cbr-miR-784
158 TGGCACAATACCTGTATGTAGA
159 >cbr-miR-785
160 TAAGTGAATACTCTGTGTTGA
161 >cbr-miR-786
162 TAATGCCCTGTACGAGATTTGGT
163 >cbr-miR-787
164 TAAGCTCGTCTTAGTTTTCCTCT
165 >cbr-miR-788
166 TCCGCTTCTCAATGCTCCATTTGCAA
167 >cbr-miR-789a
168 TCCCTGCCTGGGTCAAATGTTTT
169 >cbr-miR-789b
170 GCCCTGCCTGGGTCACCATGTGA
171 >cbr-miR-790
172 CTTGGCACTCGCGAACACCGCG
173 >cbr-miR-791
174 ATTGGCACTCCGCTGATTTGGTG
175 >cbr-miR-792
176 TTGAAATTTTTTCTATTTTCGGT
177 >cbr-miR-235
178 TATTGCACTTTCCCTGGCCAGA
179 >cbr-miR-242
180 TTGCGTAGGCCTTTGTTTCGA
181 >cbr-miR-255
182 AAACTGAAGAGATTTTTTACAG
183 >cbr-miR-359
184 TCACTGGTTATCCTCTGTCGAA
185 >cbr-miR-392
186 TATCATCGATCATGTGAGCTGT
187 >dme-miR-1
188 TGGAATGTAAAGAAGTATGGAG
189 >dme-miR-2a
190 TATCACAGCCAGCTTTGATGAGC
191 >dme-miR-2b
192 TATCACAGCCAGCTTTGAGGAGC
193 >dme-miR-3
194 TCACTGGGCAAAGTGTGTCTCA
195 >dme-miR-4
196 ATAAAGCTAGACAACCATTGA
197 >dme-miR-5
198 AAAGGAACGATCGTTGTGATATG
199 >dme-miR-6
200 TATCACAGTGGCTGTTCTTTTT
201 >dme-miR-7
202 TGGAAGACTAGTGATTTTGTTGT
203 >dme-miR-8
204 TAATACTGTCAGGTAAAGATGTC
205 >dme-miR-9a
206 TCTTTGGTTATCTAGCTGTATGA
207 >dme-miR-10
208 CAAATTCGGTTCTAGAGAGGTTT
209 >dme-miR-11
210 CATCACAGTCTGAGTTCTTGC
211 >dme-miR-12
212 TGAGTATTACATCAGGTACTGGT
213 >dme-miR-13a
214 TATCACAGCCATTTTGATGAGT
215 >dme-miR-13b
216 TATCACAGCCATTTTGACGAGT
217 >dme-miR-14
218 TCAGTCTTTTTCTCTCTCCTA
219 >dme-miR-263a
220 GTTAATGGCACTGGAAGAATTCAC
221 >dme-miR-184
222 TGGACGGAGAACTGATAAGGGC
223 >dme-miR-274
224 TTTTGTGACCGACACTAACGGGTAAT
225 >dme-miR-275
226 TCAGGTACCTGAAGTAGCGCGCG
227 >dme-miR-92a
228 CATTGCACTTGTCCCGGCCTAT
229 >dme-miR-219
230 TGATTGTCCAAACGCAATTCTTG
231 >dme-miR-276a
232 TAGGAACTTCATACCGTGCTCT
233 >dme-miR-277
234 TAAATGCACTATCTGGTACGACA
235 >dme-miR-278
236 TCGGTGGGACTTTCGTCCGTTT
237 >dme-miR-133
238 TTGGTCCCCTTCAACCAGCTGT
239 >dme-miR-279
240 TGACTAGATCCACACTCATTAA
241 >dme-miR-33
242 AGGTGCATTGTAGTCGCATTG
243 >dme-miR-280
244 TGTATTTACGTTGCATATGAAATGATA
245 >dme-miR-281
246 TGTCATGGAATTGCTCTCTTTGT
247 >dme-miR-282
248 AATCTAGCCTCTACTAGGCTTTGTCTGT
249 >dme-miR-283
250 TAAATATCAGCTGGTAATTCT
251 >dme-miR-284
252 TGAAGTCAGCAACTTGATTCCAGCAATTG
253 >dme-miR-34
254 TGGCAGTGTGGTTAGCTGGTTGTG
255 >dme-miR-124
256 TAAGGCACGCGGTGAATGCCAAG
257 >dme-miR-79
258 TAAAGCTAGATTACCAAAGCAT
259 >dme-miR-276b
260 TAGGAACTTAATACCGTGCTCT
261 >dme-miR-210
262 TTGTGCGTGTGACAGCGGCTA
263 >dme-miR-285
264 TAGCACCATTCGAAATCAGTGC
265 >dme-miR-100
266 AACCCGTAAATCCGAACTTGTG
267 >dme-miR-92b
268 AATTGCACTAGTCCCGGCCTGC
269 >dme-miR-286
270 TGACTAGACCGAACACTCGTGCT
271 >dme-miR-287
272 TGTGTTGAAAATCGTTTGCAC
273 >dme-miR-87
274 TTGAGCAAAATTTCAGGTGTG
275 >dme-miR-263b
276 CTTGGCACTGGGAGAATTCAC
277 >dme-miR-288
278 TTTCATGTCGATTTCATTTCATG
279 >dme-miR-289
280 TAAATATTTAAGTGGAGCCTGCGACT
281 >dme-bantam
282 TGAGATCATTTTGAAAGCTGATT
283 >dme-miR-303
284 TTTAGGTTTCACAGGAAACTGGT
285 >dme-miR-31b
286 TGGCAAGATGTCGGAATAGCTG
287 >dme-miR-304
288 TAATCTCAATTTGTAAATGTGAG
289 >dme-miR-305
290 ATTGTACTTCATCAGGTGCTCTG
291 >dme-miR-9c
292 TCTTTGGTATTCTAGCTGTAGA
293 >dme-miR-306
294 TCAGGTACTTAGTGACTCTCAA
295 >dme-miR-9b
296 TCTTTGGTGATTTTAGCTGTATG
297 >dme-let-7
298 TGAGGTAGTAGGTTGTATAGT
299 >dme-miR-125
300 TCCCTGAGACCCTAACTTGTGA
301 >dme-miR-307
302 TCACAACCTCCTTGAGTGAG
303 >dme-miR-308
304 AATCACAGGATTATACTGTGAG
305 >dme-miR-31a
306 TGGCAAGATGTCGGCATAGCTGA
307 >dme-miR-309
308 GCACTGGGTAAAGTTTGTCCTA
309 >dme-miR-310
310 TATTGCACACTTCCCGGCCTTT
311 >dme-miR-311
312 TATTGCACATTCACCGGCCTGA
313 >dme-miR-312
314 TATTGCACTTGAGACGGCCTGA
315 >dme-miR-313
316 TATTGCACTTTTCACAGCCCGA
317 >dme-miR-314
318 TATTCGAGCCAATAAGTTCGG
319 >dme-miR-315
320 TTTTGATTGTTGCTCAGAAAGC
321 >dme-miR-316
322 TGTCTTTTTCCGCTTACTGGCG
323 >dme-miR-317
324 TGAACACAGCTGGTGGTATCCAGT
325 >dme-miR-318
326 TCACTGGGCTTTGTTTATCTCA
327 >dme-miR-2c
328 TATCACAGCCAGCTTTGATGGGC
329 >dme-miR-iab-4-5p
330 ACGTATACTGAATGTATCCTGA
331 >dme-miR-iab-4-3p
332 CGGTATACCTTCAGTATACGTAAC
333 >dme-miR-iab-4as-5p
334 TTACGTATACTGAAGGTATACCG
335 >dme-miR-iab-4as-3p
336 GGATACATTCAGTATACGTTTA
337 >dme-miR-954
338 TCTGGGTGTTGCGTTGTGTGT
339 >dme-miR-955
340 CATCGTGCAGAGGTTTGAGTGTC
341 >dme-miR-190
342 AGATATGTTTGATATTCTTGGTTG
343 >dme-miR-193
344 TACTGGCCTACTAAGTCCCAAC
345 >dme-miR-956
346 TTTCGAGACCACTCTAATCCATT
347 >dme-miR-957
348 TGAAACCGTCCAAAACTGAGGC
349 >dme-miR-958
350 TGAGATTCTTCTATTCTACTTT
351 >dme-miR-375
352 TTTGTTCGTTTGGCTTAAGTTA
353 >dme-miR-959
354 TTGTCATCGGGGGTATTATGAA
355 >dme-miR-960
356 TGAGTATTCCAGATTGCATAGC
357 >dme-miR-961
358 TTTGATCACCAGTAACTGAGAT
359 >dme-miR-962
360 ATAAGGTAGAGAAATTGATGCTGTC
361 >dme-miR-963
362 ACAAGGTAAATATCAGGTTGTTTC
363 >dme-miR-964
364 TTAGAATAGGGGAGCTTAACTT
365 >dme-miR-932
366 TCAATTCCGTAGTGCATTGCAG
367 >dme-miR-965
368 TAAGCGTATAGCTTTTCCCCTT
369 >dme-miR-966
370 TGTGGGTTGTGGGCTGTGTGG
371 >dme-miR-967
372 AGAGATACCTCTGGAGAAGCG
373 >dme-miR-1002
374 TTAAGTAGTGGATACAAAGGGCGA
375 >dme-miR-968
376 TAAGTAGTATCCATTAAAGGGTTG
377 >dme-miR-969
378 GAGTTCCACTAAGCAAGTTTT
379 >dme-miR-970
380 TCATAAGACACACGCGGCTAT
381 >dme-miR-971
382 TTGGTGTTACTTCTTACAGTGA
383 >dme-miR-972
384 TGTACAATACGAATATTTAGGC
385 >dme-miR-973
386 TGGTTGGTGGTTGAACTTCGATTTT
387 >dme-miR-974
388 AAGCGAGCAAAGAAGTAGTATT
389 >dme-miR-975
390 TAAACACTTCCTACATCCTGTAT
391 >dme-miR-976
392 TTGGATTAGTTATCATCAATGC
393 >dme-miR-977
394 TGAGATATTCACGTTGTCTAA
395 >dme-miR-978
396 TGTCCAGTGCCGTAAATTGCAG
397 >dme-miR-979
398 TTCTTCCCGAACTCAGGCTAA
399 >dme-miR-980
400 TAGCTGCCTTGTGAAGGGCTTA
401 >dme-miR-981
402 TTCGTTGTCGACGAAACCTGCA
403 >dme-miR-982
404 TCCTGGACAAATATGAAGTAAAT
405 >dme-miR-983
406 ATAATACGTTTCGAACTAATGA
407 >dme-miR-984
408 TGAGGTAAATACGGTTGGAATTT
409 >dme-miR-927
410 TTTAGAATTCCTACGCTTTACC
411 >dme-miR-985
412 CAAATGTTCCAATGGTCGGGCA
413 >dme-miR-986
414 TCTCGAATAGCGTTGTGACTGA
415 >dme-miR-987
416 TAAAGTAAATAGTCTGGATTGATG
417 >dme-miR-988
418 CCCCTTGTTGCAAACCTCACGC
419 >dme-miR-989
420 TGTGATGTGACGTAGTGGAAC
421 >dme-miR-137
422 TATTGCTTGAGAATACACGTAG
423 >dme-miR-990
424 ATTCACCGTTCTGAGTTGGCC
425 >dme-miR-991
426 TTAAAGTTGTAGTTTGGAAAGT
427 >dme-miR-992
428 AGTACACGTTTCTGGTACTAAG
429 >dme-miR-929
430 CTCCCTAACGGAGTCAGATTG
431 >dme-miR-993
432 GAAGCTCGTCTCTACAGGTATCT
433 >dme-miR-994
434 CTAAGGAAATAGTAGCCGTGAT
435 >dme-miR-995
436 TAGCACCACATGATTCGGCTT
437 >dme-miR-996
438 TGACTAGATTTCATGCTCGTCT
439 >dme-miR-252
440 CTAAGTACTAGTGCCGCAGGAG
441 >dme-miR-997
442 CCCAAACTCGAAGGAGTTTCA
443 >dme-miR-998
444 TAGCACCATGAGATTCAGCTC
445 >dme-miR-999
446 TGTTAACTGTAAGACTGTGTCT
447 >dme-miR-1000
448 ATATTGTCCTGTCACAGCAGT
449 >dme-miR-1001
450 TGGGTAAACTCCCAAGGATCA
451 >dme-miR-1003
452 TCTCACATTTACATATTCACAG
453 >dme-miR-1004
454 TCTCACATCACTTCCCTCACAG
455 >dme-miR-1005
456 TCTGGAATCTTTAATTCGCAG
457 >dme-miR-1006
458 TAAATTCGATTTCTTATTCATAG
459 >dme-miR-1007
460 TAAGCTCAATTAACTGTTTGCA
461 >dme-miR-1008
462 TCACAGCTTTTTGTGTTTACA
463 >dme-miR-1009
464 TCTCAAAAATTGTTACATTTCAG
465 >dme-miR-1010
466 TTTCACCTATCGTTCCATTTGCAG
467 >dme-miR-1011
468 TTATTGGTTCAAATCGCTCGCAG
469 >dme-miR-1012
470 TTAGTCAAAGATTTTCCCCATAG
471 >dme-miR-1013
472 ATAAAAGTATGCCGAACTCG
473 >dme-miR-1014
474 AAAATTCATTTTCATTTGCAG
475 >dme-miR-1015
476 TCCTGGGACATCTCTCTTGCAG
477 >dme-miR-1016
478 TTCACCTCTCTCCATACTTAG
479 >dme-miR-1017
480 GAAAGCTCTACCCAAACTCATCC
481 >dme-miR-2279
482 TTTCACGCGAAGATATTTATTT
483 >dme-miR-2280
484 TCTTAGCTTGGCAATAAAATAT
485 >dme-miR-2281
486 TATCTGTATCTGCAGTATTGC
487 >dme-miR-2282
488 ATCGGTGAGCTAAAAATAGAAT
489 >dme-miR-2283
490 GAAAATATCATGAATACGACAAT