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comparison test-data/output.mrd @ 0:eaac585f172a draft

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Imported from capsule None
author rnateam
date Tue, 27 Jan 2015 09:06:24 -0500
parents
children 6a17e1229b9f
comparison
equal deleted inserted replaced
-1:000000000000 0:eaac585f172a
1 >chrII:11534525-11540624_7
2 score total 102170.8
3 score for star read(s) 3.9
4 score for read counts 102159.9
5 score for mfe 2.4
6 score for randfold 1.6
7 score for cons. seed 3
8 miRNA with same seed cbr-miR-35
9 total read count 200394
10 mature read count 200381
11 loop read count 0
12 star read count 13
13 exp fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
14 obs fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
15 pri_seq caacuauuauucucggaucagaucgagccauugcugguuucuuccacagugguacuuuccauuagaacuaucaccggguggaaacuagcaguggcucgaucuuuuccacu
16 pri_struct ..............(((..(((((((((((((((((((((((.((.(.((((((.(((......))).)))))).))).)))))))))))))))))))))))..)))... #MM
17 seq_377956_x1 ...............................ugcugguuucuuccacagugg.......................................................... 0
18 seq_377882_x1 ...............................ugAugguuucuuccacaguggu......................................................... 1
19 seq_375231_x11 ...............................ugcugguuucuuccacaguggua........................................................ 0
20 seq_377915_x1 ................................................................gaacuaucaccggguggaaacuagcag................... 0
21 seq_378313_x1 ....................................................................Aaucaccggguggaaacuag...................... 1
22 seq_378070_x1 ....................................................................Aaucaccggguggaaacuagc..................... 1
23 seq_374207_x17 ....................................................................Aaucaccggguggaaacuagcag................... 1
24 seq_365952_x99 ....................................................................Aaucaccggguggaaacuagcagu.................. 1
25 seq_377777_x1 ....................................................................uCucaccggguggaaacuagcagu.................. 1
26 seq_377818_x1 .....................................................................Cucaccggguggaaacuagca.................... 1
27 seq_378115_x1 .....................................................................aucaccggguggaaacuagca.................... 0
28 seq_377479_x2 .....................................................................aucaccggguggaaacuagcag................... 0
29 seq_377175_x3 .....................................................................Cucaccggguggaaacuagcag................... 1
30 seq_377327_x2 .....................................................................Uucaccggguggaaacuagcag................... 1
31 seq_369310_x61 .....................................................................Cucaccggguggaaacuagcagu.................. 1
32 seq_377793_x1 .....................................................................aucaccgggGggaaacuagcagu.................. 1
33 seq_377962_x1 .....................................................................aucaAcggguggaaacuagcagu.................. 1
34 seq_378051_x1 .....................................................................aucaccggguggaaaAuagcagu.................. 1
35 seq_378323_x1 .....................................................................aucaccggguggaaacuagAagu.................. 1
36 seq_371516_x35 .....................................................................aucaccggguggaaacuagcagu.................. 0
37 seq_377055_x3 .....................................................................aucaccggguggaaacuagcagC.................. 1
38 seq_377970_x1 .....................................................................aucaccggguggaaacuagcagG.................. 1
39 seq_377511_x2 .....................................................................Uucaccggguggaaacuagcagu.................. 1
40 seq_378079_x1 .....................................................................aucaccggguggaaacuagcaguA................. 1
41 seq_377431_x2 .....................................................................aucaccggguggaaacuagcaguU................. 1
42 seq_377752_x1 ......................................................................ucaccggguggaaaAuag...................... 1
43 seq_377443_x2 ......................................................................ucaccgggCggaaacuag...................... 1
44 seq_378226_x1 ......................................................................ucaccCgguggaaacuag...................... 1
45 seq_377974_x1 ......................................................................ucaccgggGggaaacuag...................... 1
46 seq_378168_x1 ......................................................................ucaUcggguggaaacuag...................... 1
47 seq_377959_x1 ......................................................................ucaAcggguggaaacuag...................... 1
48 seq_377875_x1 ......................................................................ucaccggguggaaaUuag...................... 1
49 seq_377878_x1 ......................................................................ucaccggguCgaaacuag...................... 1
50 seq_378112_x1 ......................................................................ucaccggguggaNacuag...................... 1
51 seq_378013_x1 ......................................................................ucaccggguggaaacuaC...................... 1
52 seq_366886_x88 ......................................................................ucaccggguggaaacuag...................... 0
53 seq_377813_x1 ......................................................................ucaccgggCggaaacuagc..................... 1
54 seq_377341_x2 ......................................................................ucaccggguggaaacuaCc..................... 1
55 seq_378124_x1 ......................................................................Ccaccggguggaaacuagc..................... 1
56 seq_378326_x1 ......................................................................ucaccgggugAaaacuagc..................... 1
57 seq_377088_x3 ......................................................................ucaccgggGggaaacuagc..................... 1
58 seq_378155_x1 ......................................................................ucaccgggugCaaacuagc..................... 1
59 seq_377717_x2 ......................................................................ucaccggguggaaacuCgc..................... 1
60 seq_377885_x1 ......................................................................ucaccggguggaCacuagc..................... 1
61 seq_377957_x1 ......................................................................ucaccggguggGaacuagc..................... 1
62 seq_376727_x4 ......................................................................ucaccggguggaNacuagc..................... 1
63 seq_363229_x131 ......................................................................ucaccggguggaaacuagc..................... 0
64 seq_377513_x2 ......................................................................ucacAggguggaaacuagc..................... 1
65 seq_378006_x1 ......................................................................ucaAcggguggaaacuagc..................... 1
66 seq_377383_x2 ......................................................................ucaccggguggaaaGuagc..................... 1
67 seq_377539_x2 ......................................................................ucaccggguggaaacuagU..................... 1
68 seq_377451_x2 ......................................................................ucaccggguggaaacuagA..................... 1
69 seq_372840_x25 ......................................................................ucaccgggCggaaacuagca.................... 1
70 seq_377947_x1 ......................................................................ucGccggguggaaacuagca.................... 1
71 seq_376538_x5 ......................................................................uAaccggguggaaacuagca.................... 1
72 seq_377946_x1 ......................................................................ucaccggguggaaacGagca.................... 1
73 seq_375901_x9 ......................................................................ucaccggguggaaacuaUca.................... 1
74 seq_377531_x2 ......................................................................ucaccgggugCaaacuagca.................... 1
75 seq_378056_x1 ......................................................................ucaccggguggGaacuagca.................... 1
76 seq_376791_x4 ......................................................................ucaccggguggaGacuagca.................... 1
77 seq_373200_x23 ......................................................................ucaccggguggaNacuagca.................... 1
78 seq_377848_x1 ......................................................................ucaccggguggaaacuNgca.................... 1
79 seq_377417_x2 ......................................................................ucaccggguggaaCcuagca.................... 1
80 seq_377003_x4 ......................................................................ucaccgAguggaaacuagca.................... 1
81 seq_376401_x6 ......................................................................ucaccggCuggaaacuagca.................... 1
82 seq_377127_x3 ......................................................................ucaccggAuggaaacuagca.................... 1
83 seq_378107_x1 ......................................................................uUaccggguggaaacuagca.................... 1
84 seq_376935_x4 ......................................................................Gcaccggguggaaacuagca.................... 1
85 seq_375025_x13 ......................................................................ucaccggguggaaacuagcU.................... 1
86 seq_377653_x2 ......................................................................ucaccggguggaaacCagca.................... 1
87 seq_313497_x2021......................................................................ucaccggguggaaacuagca.................... 0
88 seq_374657_x15 ......................................................................ucaccggguggaaaAuagca.................... 1
89 seq_377613_x2 ......................................................................ucaccggguUgaaacuagca.................... 1
90 seq_375675_x10 ......................................................................ucaccggguggaaacuagcG.................... 1
91 seq_371371_x37 ......................................................................ucaccgggGggaaacuagca.................... 1
92 seq_376763_x4 ......................................................................ucacUggguggaaacuagca.................... 1
93 seq_375934_x8 ......................................................................ucaccggguggaaacuCgca.................... 1
94 seq_377599_x2 ......................................................................ucaccggguggaaacuagUa.................... 1
95 seq_377839_x1 ......................................................................Ncaccggguggaaacuagca.................... 1
96 seq_378050_x1 ......................................................................uNaccggguggaaacuagca.................... 1
97 seq_376799_x4 ......................................................................ucaccggguggaaacuaAca.................... 1
98 seq_376638_x5 ......................................................................ucaccggguggaCacuagca.................... 1
99 seq_373823_x19 ......................................................................ucaccgggAggaaacuagca.................... 1
100 seq_376803_x4 ......................................................................ucaccggguggaaacuagcC.................... 1
101 seq_377683_x2 ......................................................................ucaccggguggaaacuagAa.................... 1
102 seq_377112_x3 ......................................................................ucaccggguggCaacuagca.................... 1
103 seq_376658_x5 ......................................................................ucaccggguggaaaUuagca.................... 1
104 seq_376485_x6 ......................................................................ucaccggguggUaacuagca.................... 1
105 seq_376169_x7 ......................................................................ucaccggguggaaacuagNa.................... 1
106 seq_370746_x41 ......................................................................ucacAggguggaaacuagca.................... 1
107 seq_375910_x8 ......................................................................ucaAcggguggaaacuagca.................... 1
108 seq_378190_x1 ......................................................................ucaccggguCgaaacuagca.................... 1
109 seq_377193_x3 ......................................................................ucaccgggugUaaacuagca.................... 1
110 seq_376407_x6 ......................................................................Acaccggguggaaacuagca.................... 1
111 seq_377283_x3 ......................................................................ucaUcggguggaaacuagca.................... 1
112 seq_377643_x2 ......................................................................uGaccggguggaaacuagca.................... 1
113 seq_378128_x1 ......................................................................ucaccggguggaaUcuagca.................... 1
114 seq_377561_x2 ......................................................................ucaccggguggaaacuaCca.................... 1
115 seq_375405_x10 ......................................................................ucaccgCguggaaacuagca.................... 1
116 seq_377419_x2 ......................................................................ucaccggguAgaaacuagca.................... 1
117 seq_377377_x2 ......................................................................ucaccAgguggaaacuagca.................... 1
118 seq_376497_x6 ......................................................................ucaccUgguggaaacuagca.................... 1
119 seq_377292_x3 ......................................................................Ccaccggguggaaacuagca.................... 1
120 seq_377034_x3 ......................................................................ucaccgggugAaaacuagca.................... 1
121 seq_378087_x1 ......................................................................ucaccgggNggaaacuagca.................... 1
122 seq_377235_x3 ......................................................................ucaccggguggaaacAagcag................... 1
123 seq_373154_x23 ......................................................................ucaccUgguggaaacuagcag................... 1
124 seq_361443_x144 ......................................................................ucaccgggGggaaacuagcag................... 1
125 seq_375100_x12 ......................................................................uNaccggguggaaacuagcag................... 1
126 seq_376046_x8 ......................................................................ucaccggguggaaacCagcag................... 1
127 seq_373568_x20 ......................................................................ucaccggguggaaaUuagcag................... 1
128 seq_375012_x13 ......................................................................ucaccggguUgaaacuagcag................... 1
129 seq_377076_x3 ......................................................................ucaccggguggaaacuagcGg................... 1
130 seq_374715_x14 ......................................................................ucaccggguggGaacuagcag................... 1
131 seq_370705_x41 ......................................................................ucaccggguggaaacuaUcag................... 1
132 seq_377563_x2 ......................................................................Acaccggguggaaacuagcag................... 1
133 seq_362702_x132 ......................................................................ucaccggguggaaacuagcaU................... 1
134 seq_373084_x24 ......................................................................ucaccggguggaaacuCgcag................... 1
135 seq_277590_x9943......................................................................ucaccggguggaaacuagcag................... 0
136 seq_371687_x34 ......................................................................ucaccggguggaaacuagcaA................... 1
137 seq_376246_x7 ......................................................................ucaccggUuggaaacuagcag................... 1
138 seq_373356_x22 ......................................................................ucaccgggugCaaacuagcag................... 1
139 seq_374455_x16 ......................................................................ucaccggguggaaacuaCcag................... 1
140 seq_377037_x3 ......................................................................ucUccggguggaaacuagcag................... 1
141 seq_376413_x6 ......................................................................ucaccggguggaaUcuagcag................... 1
142 seq_377325_x2 ......................................................................ucGccggguggaaacuagcag................... 1
143 seq_376383_x6 ......................................................................ucCccggguggaaacuagcag................... 1
144 seq_375242_x11 ......................................................................ucaccgUguggaaacuagcag................... 1
145 seq_374471_x16 ......................................................................uGaccggguggaaacuagcag................... 1
146 seq_374882_x13 ......................................................................ucaUcggguggaaacuagcag................... 1
147 seq_378207_x1 ......................................................................ucaccggguggaaaNuagcag................... 1
148 seq_373918_x19 ......................................................................ucaccggCuggaaacuagcag................... 1
149 seq_373993_x18 ......................................................................ucaccggguggaaacuNgcag................... 1
150 seq_373464_x21 ......................................................................ucaccggAuggaaacuagcag................... 1
151 seq_376305_x6 ......................................................................ucaccgAguggaaacuagcag................... 1
152 seq_375892_x9 ......................................................................ucaccggguggaaCcuagcag................... 1
153 seq_374047_x18 ......................................................................ucaccggguggaaacuagAag................... 1
154 seq_374813_x14 ......................................................................ucaccggguggaaacuagcaC................... 1
155 seq_374986_x13 ......................................................................ucaccggguggaaaGuagcag................... 1
156 seq_374827_x14 ......................................................................ucacUggguggaaacuagcag................... 1
157 seq_374503_x16 ......................................................................uAaccggguggaaacuagcag................... 1
158 seq_372763_x26 ......................................................................ucaccggguggaCacuagcag................... 1
159 seq_375465_x10 ......................................................................ucaccggguggaaacuGgcag................... 1
160 seq_375264_x11 ......................................................................ucaccgggugAaaacuagcag................... 1
161 seq_375575_x10 ......................................................................ucaccggguggaaacuUgcag................... 1
162 seq_378072_x1 ......................................................................ucaNcggguggaaacuagcag................... 1
163 seq_375856_x9 ......................................................................Gcaccggguggaaacuagcag................... 1
164 seq_364582_x111 ......................................................................ucaccgggCggaaacuagcag................... 1
165 seq_372940_x24 ......................................................................ucaccggguggUaacuagcag................... 1
166 seq_372523_x27 ......................................................................ucaccggguggaGacuagcag................... 1
167 seq_375172_x12 ......................................................................ucaccggguggaaacuagcCg................... 1
168 seq_375341_x11 ......................................................................ucaccggguAgaaacuagcag................... 1
169 seq_378331_x1 ......................................................................Ncaccggguggaaacuagcag................... 1
170 seq_375820_x9 ......................................................................ucaccgggugUaaacuagcag................... 1
171 seq_377543_x2 ......................................................................ucaccggNuggaaacuagcag................... 1
172 seq_375784_x9 ......................................................................ucaccggguggaUacuagcag................... 1
173 seq_374275_x17 ......................................................................ucaGcggguggaaacuagcag................... 1
174 seq_374582_x15 ......................................................................ucaccggguggaaacuagNag................... 1
175 seq_377647_x2 ......................................................................ucaccggguCgaaacuagcag................... 1
176 seq_371106_x39 ......................................................................ucaAcggguggaaacuagcag................... 1
177 seq_357095_x189 ......................................................................ucacAggguggaaacuagcag................... 1
178 seq_376225_x7 ......................................................................uUaccggguggaaacuagcag................... 1
179 seq_374224_x17 ......................................................................ucaccggguggaaacuagcUg................... 1
180 seq_377577_x2 ......................................................................ucaccggguggaaGcuagcag................... 1
181 seq_364121_x117 ......................................................................ucaccgggAggaaacuagcag................... 1
182 seq_374743_x14 ......................................................................ucaccggguggCaacuagcag................... 1
183 seq_377298_x3 ......................................................................ucaccggguggaaacGagcag................... 1
184 seq_370537_x43 ......................................................................ucaccgCguggaaacuagcag................... 1
185 seq_376827_x4 ......................................................................ucacGggguggaaacuagcag................... 1
186 seq_377575_x2 ......................................................................ucaccggguggaaacuagGag................... 1
187 seq_366243_x94 ......................................................................ucaccggguggaaaAuagcag................... 1
188 seq_376267_x7 ......................................................................ucaccCgguggaaacuagcag................... 1
189 seq_374173_x17 ......................................................................ucaccggguggaaacuaAcag................... 1
190 seq_376491_x6 ......................................................................ucaccAgguggaaacuagcag................... 1
191 seq_366616_x91 ......................................................................ucaccggguggaNacuagcag................... 1
192 seq_374921_x13 ......................................................................Ccaccggguggaaacuagcag................... 1
193 seq_372294_x30 ......................................................................ucaccggguggaaacuagUag................... 1
194 seq_353824_x217 ......................................................................ucaccggguggaaacuagcaUu.................. 1
195 seq_350246_x264 ......................................................................ucaccggguggCaacuagcagu.................. 1
196 seq_315518_x1866......................................................................ucaccgggCggaaacuagcagu.................. 1
197 seq_359581_x164 ......................................................................ucaccggguggaaUcuagcagu.................. 1
198 seq_362834_x132 ......................................................................ucaccggguggaaacuagcaAu.................. 1
199 seq_343209_x360 ......................................................................ucaccgggugAaaacuagcagu.................. 1
200 seq_370664_x41 ......................................................................ucaccggguggaaacAagcagu.................. 1
201 seq_358905_x171 ......................................................................ucaccggguggaUacuagcagu.................. 1
202 seq_365851_x101 ......................................................................ucaccggguAgaaacuagcagu.................. 1
203 seq_337854_x604 ......................................................................ucaAcggguggaaacuagcagu.................. 1
204 seq_356125_x198 ......................................................................ucaccggguggGaacuagcagu.................. 1
205 seq_356519_x194 ......................................................................ucaccAgguggaaacuagcagu.................. 1
206 seq_360382_x156 ......................................................................ucaccggguggaaacuaAcagu.................. 1
207 seq_346877_x304 ......................................................................ucaccggguggaaacuagcUgu.................. 1
208 seq_350773_x263 ......................................................................ucaccggguggaaacuagAagu.................. 1
209 seq_334503_x690 ......................................................................ucaccggguggaaacuagcagC.................. 1
210 seq_303609_x2808......................................................................ucaccgggGggaaacuagcagu.................. 1
211 seq_338458_x598 ......................................................................ucaccggguggaaacuaUcagu.................. 1
212 seq_378211_x1 ......................................................................ucaccggguggNaacuagcagu.................. 1
213 seq_364693_x111 ......................................................................ucaccggguggaaacGagcagu.................. 1
214 seq_371067_x39 ......................................................................ucaccggNuggaaacuagcagu.................. 1
215 seq_358554_x177 ......................................................................ucaccgAguggaaacuagcagu.................. 1
216 seq_324605_x1295......................................................................ucaccggguggaNacuagcagu.................. 1
217 seq_363360_x131 ......................................................................ucaccggguggaaaGuagcagu.................. 1
218 seq_350510_x263 ......................................................................ucaccggguggaaacuaCcagu.................. 1
219 seq_353161_x223 ......................................................................ucaccggguggaaacuNgcagu.................. 1
220 seq_369000_x64 ......................................................................ucaccggguggaaacuagcGgu.................. 1
221 seq_376811_x4 ......................................................................ucaccNgguggaaacuagcagu.................. 1
222 seq_354681_x211 ......................................................................ucaGcggguggaaacuagcagu.................. 1
223 seq_345626_x322 ......................................................................ucaccggguggaaaUuagcagu.................. 1
224 seq_371184_x38 ......................................................................ucacGggguggaaacuagcagu.................. 1
225 seq_348338_x283 ......................................................................ucaccggguggaaacuagUagu.................. 1
226 seq_346264_x309 ......................................................................ucaccggguggaaacuagcCgu.................. 1
227 seq_343924_x352 ......................................................................ucaccgggugCaaacuagcagu.................. 1
228 seq_306417_x2793......................................................................ucacAggguggaaacuagcagu.................. 1
229 seq_346573_x304 ......................................................................ucaccggguggUaacuagcagu.................. 1
230 seq_339056_x557 ......................................................................ucaccggguggaaacuagcagG.................. 1
231 seq_374612_x15 ......................................................................ucaccgggNggaaacuagcagu.................. 1
232 seq_367235_x86 ......................................................................ucaccCgguggaaacuagcagu.................. 1
233 seq_333000_x757 ......................................................................ucaccgCguggaaacuagcagu.................. 1
234 seq_377559_x2 ......................................................................ucNccggguggaaacuagcagu.................. 1
235 seq_340662_x508 ......................................................................ucaccggguggaCacuagcagu.................. 1
236 seq_317384_x1629......................................................................ucaccgggAggaaacuagcagu.................. 1
237 seq_370493_x44 ......................................................................ucGccggguggaaacuagcagu.................. 1
238 seq_357654_x183 ......................................................................uGaccggguggaaacuagcagu.................. 1
239 seq_336553_x669 ......................................................................ucaccggguggaaacuagcagA.................. 1
240 seq_362966_x132 ......................................................................ucaccgggugUaaacuagcagu.................. 1
241 seq_0_x149538 ......................................................................ucaccggguggaaacuagcagu.................. 0
242 seq_355722_x204 ......................................................................uUaccggguggaaacuagcagu.................. 1
243 seq_374567_x15 ......................................................................ucaNcggguggaaacuagcagu.................. 1
244 seq_367321_x85 ......................................................................ucaccggguggaaCcuagcagu.................. 1
245 seq_359246_x169 ......................................................................ucacUggguggaaacuagcagu.................. 1
246 seq_321959_x1326......................................................................ucaccggguggaaaAuagcagu.................. 1
247 seq_373688_x20 ......................................................................Ncaccggguggaaacuagcagu.................. 1
248 seq_352016_x236 ......................................................................ucaccggguggaaacuagNagu.................. 1
249 seq_349981_x265 ......................................................................ucaccggguUgaaacuagcagu.................. 1
250 seq_377079_x3 ......................................................................ucaccggguggaaaNuagcagu.................. 1
251 seq_355102_x209 ......................................................................ucaccggCuggaaacuagcagu.................. 1
252 seq_363620_x129 ......................................................................ucaccgUguggaaacuagcagu.................. 1
253 seq_348621_x282 ......................................................................ucaccggguggaaacuCgcagu.................. 1
254 seq_364914_x108 ......................................................................ucaccggUuggaaacuagcagu.................. 1
255 seq_356713_x192 ......................................................................Gcaccggguggaaacuagcagu.................. 1
256 seq_362015_x141 ......................................................................uNaccggguggaaacuagcagu.................. 1
257 seq_377049_x3 ......................................................................ucaccggguggaaacuagcagN.................. 1
258 seq_370988_x40 ......................................................................ucaccggguggaaacuagGagu.................. 1
259 seq_365750_x101 ......................................................................Acaccggguggaaacuagcagu.................. 1
260 seq_360538_x155 ......................................................................ucaccggguCgaaacuagcagu.................. 1
261 seq_358198_x178 ......................................................................ucaccggguggaaacuagcaCu.................. 1
262 seq_347766_x287 ......................................................................uAaccggguggaaacuagcagu.................. 1
263 seq_367734_x78 ......................................................................ucCccggguggaaacuagcagu.................. 1
264 seq_359907_x159 ......................................................................ucaccggguggaaacuGgcagu.................. 1
265 seq_349444_x269 ......................................................................ucaccUgguggaaacuagcagu.................. 1
266 seq_361151_x146 ......................................................................Ccaccggguggaaacuagcagu.................. 1
267 seq_344276_x345 ......................................................................ucaccggguggaGacuagcagu.................. 1
268 seq_376183_x7 ......................................................................ucaccggguggaaacuaNcagu.................. 1
269 seq_353605_x219 ......................................................................ucaccggAuggaaacuagcagu.................. 1
270 seq_359415_x166 ......................................................................ucaccggguggaaacCagcagu.................. 1
271 seq_371755_x33 ......................................................................ucUccggguggaaacuagcagu.................. 1
272 seq_355518_x204 ......................................................................ucaUcggguggaaacuagcagu.................. 1
273 seq_375811_x9 ......................................................................ucacNggguggaaacuagcagu.................. 1
274 seq_342436_x389 ......................................................................ucaccggguggaaacuUgcagu.................. 1
275 seq_370948_x40 ......................................................................ucaccggguggaaGcuagcagu.................. 1
276 seq_369608_x57 ......................................................................ucaccggguggaaacuagcagug................. 0
277 seq_309210_x2159......................................................................ucaccggguggaaacuagcaguA................. 1
278 seq_378140_x1 ......................................................................ucaccggguCgaaacuagcagug................. 1
279 seq_378025_x1 ......................................................................ucaccggguUgaaacuagcagug................. 1
280 seq_287533_x5429......................................................................ucaccggguggaaacuagcaguU................. 1
281 seq_377923_x1 ......................................................................ucaccggguggaaaAuagcagug................. 1
282 seq_377507_x2 ......................................................................ucaccggguggaUacuagcagug................. 1
283 seq_369929_x51 ......................................................................ucaccggguggaaacuagcaguC................. 1
284 seq_377181_x3 ......................................................................ucaccgggGggaaacuagcagug................. 1
285 seq_378212_x1 ......................................................................ucaccggguggaaacuagcaAug................. 1
286 seq_378218_x1 ......................................................................ucaccggguggaaacuagcagCg................. 1
287 seq_378222_x1 ......................................................................ucaccgggCggaaacuagcagug................. 1
288 seq_377304_x3 ......................................................................ucacAggguggaaacuagcagug................. 1
289 seq_378319_x1 ......................................................................ucaccggguggaaacuagNagug................. 1
290 seq_378109_x1 ......................................................................Gcaccggguggaaacuagcagug................. 1
291 seq_377806_x1 ......................................................................ucaccggguggaCacuagcagug................. 1
292 seq_378252_x1 ......................................................................ucaccgggugCaaacuagcagug................. 1
293 seq_378135_x1 ......................................................................ucaccggguggaaacuagcagAgg................ 1
294 seq_377427_x2 ......................................................................ucaccggguggaaacuagcagugU................ 1
295 seq_376723_x4 ......................................................................ucaccggguggaaacuagcaguAg................ 1
296 seq_378093_x1 ......................................................................ucaccggguggaaacuagcagugg................ 0
297 seq_378199_x1 ......................................................................Ccaccggguggaaacuagcagugg................ 1
298 seq_377019_x3 ......................................................................ucaccggguggaaacuagcaguUg................ 1
299 seq_376939_x4 ......................................................................ucaccggguggaaacuagcagugC................ 1
300 seq_377675_x2 ......................................................................ucaccggguggaaacuagcagugCc............... 1
301 seq_378133_x1 ......................................................................ucaccggguggaaacuagcaguCgc............... 1
302 seq_377421_x2 ......................................................................ucaccggguggaaacuagcagugAc............... 1
303 seq_377913_x1 ......................................................................ucaccggguggaaacuagcaguggA............... 1
304 seq_378078_x1 ......................................................................ucaccggguggaaacuagcaguggU............... 1
305 seq_377619_x2 ......................................................................ucaccggguggaaacuagcaguAgc............... 1
306 seq_377807_x1 ......................................................................ucaccggguggaaacuagcagAggc............... 1
307 seq_377898_x1 ......................................................................ucaccggguggaaacuagcagugAcu.............. 1
308 seq_378113_x1 ......................................................................ucaccggguggaaacuagcaguggAu.............. 1
309 seq_377401_x2 ......................................................................ucaccggguggaaacuagcaguggcG.............. 1
310 seq_378194_x1 ......................................................................ucaccggguggaaacuagcaguggcu.............. 0
311 seq_378167_x1 ......................................................................ucaccggguggaaacuagcaguCgcuc............. 1
312 seq_378175_x1 ......................................................................ucaccggguggaaacuagcaguggUuc............. 1
313 seq_377994_x1 .......................................................................caccggguggaaacuagca.................... 0
314 seq_378189_x1 .......................................................................caccggguggGaacuagcag................... 1
315 seq_374960_x13 .......................................................................caccggguggaaacuagcag................... 0
316 seq_377130_x3 .......................................................................caccgggAggaaacuagcagu.................. 1
317 seq_377925_x1 .......................................................................caccggguggaaacuagAagu.................. 1
318 seq_378300_x1 .......................................................................cCccggguggaaacuagcagu.................. 1
319 seq_377505_x2 .......................................................................Uaccggguggaaacuagcagu.................. 1
320 seq_365546_x102 .......................................................................caccggguggaaacuagcagu.................. 0
321 seq_377187_x3 .......................................................................caccggguggaaaAuagcagu.................. 1
322 seq_374407_x16 .......................................................................caccgggGggaaacuagcagu.................. 1
323 seq_377475_x2 .......................................................................caAcggguggaaacuagcagu.................. 1
324 seq_377908_x1 .......................................................................caccggguggaaacuagcaUu.................. 1
325 seq_378180_x1 .......................................................................caccggguggaaacuagcGgu.................. 1
326 seq_377250_x3 .......................................................................caccgggCggaaacuagcagu.................. 1
327 seq_375435_x10 .......................................................................caccggguggaaacuagcaguA................. 1
328 seq_371551_x34 .......................................................................caccggguggaaacuagcaguU................. 1
329 seq_378114_x1 ........................................................................accggguggaaGcuagca.................... 1
330 seq_377537_x2 ........................................................................accCgguggaaacuagca.................... 1
331 seq_375253_x11 ........................................................................accggguggaaacuagca.................... 0
332 seq_378294_x1 ........................................................................accggguggGaacuagca.................... 1
333 seq_377758_x1 ........................................................................accggguggaaacuagcCg................... 1
334 seq_377711_x2 ........................................................................accgggAggaaacuagcag................... 1
335 seq_368606_x67 ........................................................................accggguggaaacuagcag................... 0
336 seq_377491_x2 ........................................................................accgggCggaaacuagcag................... 1
337 seq_378325_x1 ........................................................................accggguggGaacuagcag................... 1
338 seq_377944_x1 ........................................................................aAcggguggaaacuagcag................... 1
339 seq_378146_x1 ........................................................................accggguggaGacuagcag................... 1
340 seq_378272_x1 ........................................................................accgAguggaaacuagcag................... 1
341 seq_378213_x1 ........................................................................accggguggaaacuaAcag................... 1
342 seq_376449_x6 ........................................................................accgggGggaaacuagcag................... 1
343 seq_377814_x1 ........................................................................accggguggaaacuaUcag................... 1
344 seq_377816_x1 ........................................................................accggguggaaacuagcaC................... 1
345 seq_377487_x2 ........................................................................accggguggaCacuagcagu.................. 1
346 seq_377976_x1 ........................................................................accgggugCaaacuagcagu.................. 1
347 seq_376895_x4 ........................................................................accggguggCaacuagcagu.................. 1
348 seq_376608_x5 ........................................................................accggguggaaacuagAagu.................. 1
349 seq_377589_x2 ........................................................................accggguggaaacCagcagu.................. 1
350 seq_378160_x1 ........................................................................accggguggaaacuGgcagu.................. 1
351 seq_376197_x7 ........................................................................accggguggaaaUuagcagu.................. 1
352 seq_377007_x3 ........................................................................accgAguggaaacuagcagu.................. 1
353 seq_378247_x1 ........................................................................accggguggaaacuagcaAu.................. 1
354 seq_377343_x2 ........................................................................accggguAgaaacuagcagu.................. 1
355 seq_369980_x50 ........................................................................accCgguggaaacuagcagu.................. 1
356 seq_377859_x1 ........................................................................accAgguggaaacuagcagu.................. 1
357 seq_377999_x1 ........................................................................accggguggaaGcuagcagu.................. 1
358 seq_377373_x2 ........................................................................accgggugAaaacuagcagu.................. 1
359 seq_377142_x3 ........................................................................acUggguggaaacuagcagu.................. 1
360 seq_377064_x3 ........................................................................accggguggaaacuagNagu.................. 1
361 seq_368470_x69 ........................................................................accgggGggaaacuagcagu.................. 1
362 seq_378073_x1 ........................................................................accggguggaaacuUgcagu.................. 1
363 seq_376623_x5 ........................................................................accggguggaaaNuagcagu.................. 1
364 seq_374672_x15 ........................................................................accgggAggaaacuagcagu.................. 1
365 seq_377457_x2 ........................................................................accgggugUaaacuagcagu.................. 1
366 seq_378191_x1 ........................................................................aGcggguggaaacuagcagu.................. 1
367 seq_329405_x990 ........................................................................accggguggaaacuagcagu.................. 0
368 seq_375926_x8 ........................................................................accggguggGaacuagcagu.................. 1
369 seq_374908_x13 ........................................................................accggguggaaacuagcagC.................. 1
370 seq_377307_x3 ........................................................................accggguggaaaGuagcagu.................. 1
371 seq_376987_x4 ........................................................................acAggguggaaacuagcagu.................. 1
372 seq_377767_x1 ........................................................................accggguggaUacuagcagu.................. 1
373 seq_378314_x1 ........................................................................accggguggaaacAagcagu.................. 1
374 seq_377983_x1 ........................................................................accggNuggaaacuagcagu.................. 1
375 seq_376871_x4 ........................................................................accggguggaaacuagcUgu.................. 1
376 seq_377583_x2 ........................................................................aUcggguggaaacuagcagu.................. 1
377 seq_376867_x4 ........................................................................accggguCgaaacuagcagu.................. 1
378 seq_376479_x6 ........................................................................aAcggguggaaacuagcagu.................. 1
379 seq_378163_x1 ........................................................................accUgguggaaacuagcagu.................. 1
380 seq_377010_x3 ........................................................................accggguggaaacuaCcagu.................. 1
381 seq_377268_x3 ........................................................................accgCguggaaacuagcagu.................. 1
382 seq_375730_x9 ........................................................................accggguggaaacuagcagA.................. 1
383 seq_375802_x9 ........................................................................accggguggaaacuaAcagu.................. 1
384 seq_377988_x1 ........................................................................accggguggaaacuagcaNu.................. 1
385 seq_376787_x4 ........................................................................accggguggUaacuagcagu.................. 1
386 seq_377415_x2 ........................................................................accggguggaaacuCgcagu.................. 1
387 seq_370268_x46 ........................................................................accgggCggaaacuagcagu.................. 1
388 seq_377889_x1 ........................................................................acGggguggaaacuagcagu.................. 1
389 seq_374934_x13 ........................................................................accggguggaaaAuagcagu.................. 1
390 seq_377519_x2 ........................................................................aNcggguggaaacuagcagu.................. 1
391 seq_377881_x1 ........................................................................accggguggaaacGagcagu.................. 1
392 seq_377381_x2 ........................................................................accggguggaaacuagcaUu.................. 1
393 seq_377097_x3 ........................................................................Uccggguggaaacuagcagu.................. 1
394 seq_377797_x1 ........................................................................accggguggaaacuagGagu.................. 1
395 seq_376887_x4 ........................................................................accggUuggaaacuagcagu.................. 1
396 seq_378150_x1 ........................................................................accggguggaaCcuagcagu.................. 1
397 seq_378251_x1 ........................................................................accggguggaaacuagUagu.................. 1
398 seq_376708_x5 ........................................................................accggguggaaacuagcaCu.................. 1
399 seq_377811_x1 ........................................................................Cccggguggaaacuagcagu.................. 1
400 seq_376731_x4 ........................................................................accggguggaaacuaUcagu.................. 1
401 seq_375829_x9 ........................................................................accggguggaaacuagcagG.................. 1
402 seq_374535_x16 ........................................................................accggguggaaacuagcCgu.................. 1
403 seq_377685_x2 ........................................................................accggguggaGacuagcagu.................. 1
404 seq_372017_x32 ........................................................................accggguggaaacuagcaguU................. 1
405 seq_377768_x1 ........................................................................accggguggaaacuagcagug................. 0
406 seq_373036_x24 ........................................................................accggguggaaacuagcaguA................. 1
407 seq_376927_x4 .........................................................................Ucggguggaaacuagcagu.................. 1
408 seq_376014_x8 .........................................................................ccggguggaaacuagcagu.................. 0
409 seq_378116_x1 .........................................................................Acggguggaaacuagcagu.................. 1
410 seq_378329_x1 .........................................................................ccggguggaaacuagcaguggcu.............. 0
411 seq_376903_x4 ..........................................................................cggguggaaacuagcagu.................. 0
412 seq_378178_x1 ..........................................................................cggguggaaacuagAagu.................. 1
413 seq_377996_x1 ............................................................................................ggcuAgaucuuuuccacu 1
414
415
416
417 >chrII:11534525-11540624_12
418 score total -0.2
419 score for star read(s) -1.3
420 score for read counts 0
421 score for mfe 0.2
422 score for randfold -2.2
423 score for cons. seed 3
424 miRNA with same seed cbr-miR-35
425 total read count 119546
426 mature read count 119545
427 loop read count 1
428 star read count 0
429 exp ffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSSSSffffffffffff
430 pri_seq gcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaa
431 pri_struct ..................((((((((((.((((....((((.(..(((((..(.....)..))))...)..)))))....))))...)).))))))))............ #MM
432 seq_378182_x1 ................Gguaucaccgggugaacacuugcagu.................................................................... 1
433 seq_378210_x1 ..................uaucaccgggugaacacuugca...................................................................... 0
434 seq_377082_x3 ..................Aaucaccgggugaacacuugcag..................................................................... 1
435 seq_376915_x4 ..................uaucaccgggugaacacuugcag..................................................................... 0
436 seq_378060_x1 ..................uaucaccgggugaacacuugcagu.................................................................... 0
437 seq_367062_x87 ..................Aaucaccgggugaacacuugcagu.................................................................... 1
438 seq_377289_x3 ...................aucaccgggugaacacuugca...................................................................... 0
439 seq_377605_x2 ...................Cucaccgggugaacacuugca...................................................................... 1
440 seq_378046_x1 ...................aucaccgggugaacacGugca...................................................................... 1
441 seq_378288_x1 ...................aucaccgggGgaacacuugcag..................................................................... 1
442 seq_377997_x1 ...................aucaccgggugaaUacuugcag..................................................................... 1
443 seq_373177_x23 ...................Uucaccgggugaacacuugcag..................................................................... 1
444 seq_377844_x1 ...................aucaccgggugaacacuugcaU..................................................................... 1
445 seq_373668_x20 ...................aucaccgggugaacacuugcag..................................................................... 0
446 seq_377762_x1 ...................aucaAcgggugaacacuugcag..................................................................... 1
447 seq_377747_x1 ...................aucaccgggugaacaAuugcag..................................................................... 1
448 seq_376775_x4 ...................aucaccgggCgaacacuugcagu.................................................................... 1
449 seq_377639_x2 ...................aucaccCggugaacacuugcagu.................................................................... 1
450 seq_377521_x2 ...................aucaccgggugaacacuugAagu.................................................................... 1
451 seq_377783_x1 ...................aucaccggCugaacacuugcagu.................................................................... 1
452 seq_368805_x66 ...................Cucaccgggugaacacuugcagu.................................................................... 1
453 seq_377353_x2 ...................aucaccgggugaacacuugcagC.................................................................... 1
454 seq_378177_x1 ...................aucaccgggugaacacuGgcagu.................................................................... 1
455 seq_378165_x1 ...................aucaccgggugaNcacuugcagu.................................................................... 1
456 seq_377109_x3 ...................aucaccgggugaacacuugcaUu.................................................................... 1
457 seq_377917_x1 ...................Uucaccgggugaacacuugcagu.................................................................... 1
458 seq_376831_x4 ...................aucaccgggAgaacacuugcagu.................................................................... 1
459 seq_377800_x1 ...................aucaccggUugaacacuugcagu.................................................................... 1
460 seq_376839_x4 ...................aucaccgggGgaacacuugcagu.................................................................... 1
461 seq_377963_x1 ...................auGaccgggugaacacuugcagu.................................................................... 1
462 seq_378067_x1 ...................aucaccggAugaacacuugcagu.................................................................... 1
463 seq_358376_x178 ...................aucaccgggugaacacuugcagu.................................................................... 0
464 seq_377709_x2 ...................aucaccgggugaacacuugcCgu.................................................................... 1
465 seq_377782_x1 ...................aucaccgggugaacacuugcUgu.................................................................... 1
466 seq_377958_x1 ...................aucaccgCgugaacacuugcagu.................................................................... 1
467 seq_378230_x1 ...................aucaccgggugaacacuugcGgu.................................................................... 1
468 seq_377855_x1 ...................aucaccgggugaacacuugcagA.................................................................... 1
469 seq_378037_x1 ...................aucaccgAgugaacacuugcagu.................................................................... 1
470 seq_378265_x1 ...................aucaccgggugaacCcuugcagu.................................................................... 1
471 seq_377954_x1 ...................aucaccgggugaacacuCgcagu.................................................................... 1
472 seq_377772_x1 ...................aucaAcgggugaacacuugcagu.................................................................... 1
473 seq_377527_x2 ...................aucaccgggugaacacuugcaguA................................................................... 1
474 seq_377133_x3 ...................aucaccgggugaacacuugcaguU................................................................... 1
475 seq_378317_x1 ....................uAaccgggugaacacuug........................................................................ 1
476 seq_378095_x1 ....................Acaccgggugaacacuug........................................................................ 1
477 seq_373608_x20 ....................ucaccgggugaacacuug........................................................................ 0
478 seq_377971_x1 ....................ucaAcgggugaacacuug........................................................................ 1
479 seq_378106_x1 ....................ucaccgggugaaAacuug........................................................................ 1
480 seq_377951_x1 ....................ucaccgggGgaacacuug........................................................................ 1
481 seq_378005_x1 ....................ucaccgggugaCcacuug........................................................................ 1
482 seq_377918_x1 ....................ucaccgggugaacacuuU........................................................................ 1
483 seq_378295_x1 ....................ucaccgUgugaacacuug........................................................................ 1
484 seq_377445_x2 ....................ucaccgggugaaGacuug........................................................................ 1
485 seq_377897_x1 ....................ucaccgggugaaGacuugc....................................................................... 1
486 seq_378284_x1 ....................ucaccgggugaacaGuugc....................................................................... 1
487 seq_373012_x24 ....................ucaccgggugaacacuugc....................................................................... 0
488 seq_377615_x2 ....................uAaccgggugaacacuugca...................................................................... 1
489 seq_377553_x2 ....................uUaccgggugaacacuugca...................................................................... 1
490 seq_378074_x1 ....................ucaccgggugaaNacuugca...................................................................... 1
491 seq_376735_x4 ....................ucaccgggugaacacuuUca...................................................................... 1
492 seq_375220_x11 ....................ucaccgggCgaacacuugca...................................................................... 1
493 seq_378034_x1 ....................ucaccgggugCacacuugca...................................................................... 1
494 seq_376568_x5 ....................ucaccggCugaacacuugca...................................................................... 1
495 seq_376461_x6 ....................ucaccgAgugaacacuugca...................................................................... 1
496 seq_377473_x2 ....................ucaccgggugaacacGugca...................................................................... 1
497 seq_377757_x1 ....................ucaccggguCaacacuugca...................................................................... 1
498 seq_372988_x24 ....................ucacAgggugaacacuugca...................................................................... 1
499 seq_378205_x1 ....................ucaccgggugaacacuugUa...................................................................... 1
500 seq_376943_x4 ....................ucaccgggugaacaAuugca...................................................................... 1
501 seq_377253_x3 ....................ucaccgggugaacUcuugca...................................................................... 1
502 seq_377555_x2 ....................ucaUcgggugaacacuugca...................................................................... 1
503 seq_377891_x1 ....................ucaccAggugaacacuugca...................................................................... 1
504 seq_378327_x1 ....................ucaccgggugaacacuugAa...................................................................... 1
505 seq_327151_x1237....................ucaccgggugaacacuugca...................................................................... 0
506 seq_378238_x1 ....................ucaccgggugaacacuCgca...................................................................... 1
507 seq_377912_x1 ....................uNaccgggugaacacuugca...................................................................... 1
508 seq_376443_x6 ....................ucaccgggugaaUacuugca...................................................................... 1
509 seq_375385_x10 ....................ucaccgggugaacacuGgca...................................................................... 1
510 seq_377802_x1 ....................ucaccgggugaacacCugca...................................................................... 1
511 seq_376663_x5 ....................ucaccgggugaacacuugcU...................................................................... 1
512 seq_376783_x4 ....................ucaccgggugaacacuuAca...................................................................... 1
513 seq_376795_x4 ....................ucGccgggugaacacuugca...................................................................... 1
514 seq_377190_x3 ....................ucaccgggugaacacuAgca...................................................................... 1
515 seq_377335_x2 ....................ucaAcgggugaacacuugca...................................................................... 1
516 seq_377541_x2 ....................ucaccggAugaacacuugca...................................................................... 1
517 seq_377154_x3 ....................ucaccggguUaacacuugca...................................................................... 1
518 seq_378270_x1 ....................Acaccgggugaacacuugca...................................................................... 1
519 seq_376653_x5 ....................ucaccUggugaacacuugca...................................................................... 1
520 seq_376543_x5 ....................uGaccgggugaacacuugca...................................................................... 1
521 seq_376751_x4 ....................ucaccggUugaacacuugca...................................................................... 1
522 seq_378299_x1 ....................ucaccgggugaacGcuugca...................................................................... 1
523 seq_376078_x8 ....................ucaccgggGgaacacuugca...................................................................... 1
524 seq_377830_x1 ....................ucaccgggugaCcacuugca...................................................................... 1
525 seq_377397_x2 ....................ucaccgUgugaacacuugca...................................................................... 1
526 seq_377557_x2 ....................ucacUgggugaacacuugca...................................................................... 1
527 seq_377850_x1 ....................ucaccggNugaacacuugca...................................................................... 1
528 seq_377405_x2 ....................ucaccgggugaaGacuugca...................................................................... 1
529 seq_378080_x1 ....................ucaccgggugGacacuugca...................................................................... 1
530 seq_375883_x9 ....................ucaccgCgugaacacuugca...................................................................... 1
531 seq_377821_x1 ....................ucaccgggugaacCcuugca...................................................................... 1
532 seq_374729_x14 ....................ucaccgggugaaAacuugca...................................................................... 1
533 seq_377667_x2 ....................ucaGcgggugaacacuugca...................................................................... 1
534 seq_377565_x2 ....................ucaccgggugaacacuugcG...................................................................... 1
535 seq_377829_x1 ....................ucaccgggugaUcacuugca...................................................................... 1
536 seq_373975_x18 ....................ucaccgggAgaacacuugca...................................................................... 1
537 seq_377148_x3 ....................ucaccgggugaacacuuCca...................................................................... 1
538 seq_378321_x1 ....................ucaccCggugaacacuugca...................................................................... 1
539 seq_377824_x1 ....................Gcaccgggugaacacuugca...................................................................... 1
540 seq_377046_x3 ....................ucaccgggugaacaGuugca...................................................................... 1
541 seq_377838_x1 ....................ucaccgggugaacacuuNca...................................................................... 1
542 seq_377355_x2 ....................ucaccgggugaacacuugGag..................................................................... 1
543 seq_376603_x5 ....................Acaccgggugaacacuugcag..................................................................... 1
544 seq_375415_x10 ....................ucaccgggugaacacuugAag..................................................................... 1
545 seq_376573_x5 ....................ucaccgggugaaGacuugcag..................................................................... 1
546 seq_376425_x6 ....................ucaccgggugaacacuAgcag..................................................................... 1
547 seq_376176_x7 ....................ucaccgggugaacacuugNag..................................................................... 1
548 seq_378132_x1 ....................ucacGgggugaacacuugcag..................................................................... 1
549 seq_376588_x5 ....................ucaUcgggugaacacuugcag..................................................................... 1
550 seq_376274_x7 ....................ucaccggguAaacacuugcag..................................................................... 1
551 seq_376070_x8 ....................ucaccgggugaacacuugcaC..................................................................... 1
552 seq_375308_x11 ....................ucaccgggugaacacCugcag..................................................................... 1
553 seq_376126_x8 ....................ucaccUggugaacacuugcag..................................................................... 1
554 seq_378103_x1 ....................ucNccgggugaacacuugcag..................................................................... 1
555 seq_376593_x5 ....................uGaccgggugaacacuugcag..................................................................... 1
556 seq_373937_x19 ....................ucaccgggugaacacuuUcag..................................................................... 1
557 seq_376204_x7 ....................ucaccgggugaacacuuCcag..................................................................... 1
558 seq_377435_x2 ....................ucaccggguCaacacuugcag..................................................................... 1
559 seq_377779_x1 ....................ucaccgggugaacaGuugcag..................................................................... 1
560 seq_377788_x1 ....................ucaccgggugaacacuNgcag..................................................................... 1
561 seq_377295_x3 ....................ucaccgggugaacacuCgcag..................................................................... 1
562 seq_376521_x6 ....................uAaccgggugaacacuugcag..................................................................... 1
563 seq_375766_x9 ....................ucaccgggugaaUacuugcag..................................................................... 1
564 seq_377265_x3 ....................uUaccgggugaacacuugcag..................................................................... 1
565 seq_376835_x4 ....................ucaccggAugaacacuugcag..................................................................... 1
566 seq_377729_x2 ....................ucaccgggugaUcacuugcag..................................................................... 1
567 seq_296962_x3796....................ucaccgggugaacacuugcag..................................................................... 0
568 seq_369371_x60 ....................ucaccgggGgaacacuugcag..................................................................... 1
569 seq_376643_x5 ....................ucaccgggugCacacuugcag..................................................................... 1
570 seq_376563_x5 ....................ucaccgUgugaacacuugcag..................................................................... 1
571 seq_377437_x2 ....................ucaGcgggugaacacuugcag..................................................................... 1
572 seq_376253_x7 ....................ucaccggguUaacacuugcag..................................................................... 1
573 seq_375793_x9 ....................ucaccgggugaacacuugcCg..................................................................... 1
574 seq_367812_x78 ....................ucacAgggugaacacuugcag..................................................................... 1
575 seq_376923_x4 ....................ucaccgggugaacacAugcag..................................................................... 1
576 seq_376347_x6 ....................ucaccgAgugaacacuugcag..................................................................... 1
577 seq_376190_x7 ....................ucacUgggugaacacuugcag..................................................................... 1
578 seq_370787_x41 ....................ucaccgggCgaacacuugcag..................................................................... 1
579 seq_377025_x3 ....................ucUccgggugaacacuugcag..................................................................... 1
580 seq_376983_x4 ....................ucCccgggugaacacuugcag..................................................................... 1
581 seq_378141_x1 ....................ucaccggNugaacacuugcag..................................................................... 1
582 seq_377067_x3 ....................ucaccgggugaCcacuugcag..................................................................... 1
583 seq_376155_x7 ....................Ccaccgggugaacacuugcag..................................................................... 1
584 seq_374771_x14 ....................ucaccgggugaacacuGgcag..................................................................... 1
585 seq_377786_x1 ....................ucaccgggugaacacuugcGg..................................................................... 1
586 seq_377515_x2 ....................ucaccgggugaacCcuugcag..................................................................... 1
587 seq_375184_x12 ....................ucaccgggugaacacuugcUg..................................................................... 1
588 seq_375958_x8 ....................ucaccgggugaacacuugUag..................................................................... 1
589 seq_372173_x31 ....................ucaccgggugaaNacuugcag..................................................................... 1
590 seq_372890_x25 ....................ucaccgggugaacaAuugcag..................................................................... 1
591 seq_372737_x26 ....................ucaccgCgugaacacuugcag..................................................................... 1
592 seq_371788_x33 ....................ucaccgggAgaacacuugcag..................................................................... 1
593 seq_376931_x4 ....................ucaccgggugGacacuugcag..................................................................... 1
594 seq_376389_x6 ....................ucaccAggugaacacuugcag..................................................................... 1
595 seq_374375_x16 ....................ucaccgggugaacacuugcaU..................................................................... 1
596 seq_377333_x2 ....................uNaccgggugaacacuugcag..................................................................... 1
597 seq_377723_x2 ....................ucGccgggugaacacuugcag..................................................................... 1
598 seq_376807_x4 ....................ucaccgggugUacacuugcag..................................................................... 1
599 seq_377547_x2 ....................ucaccgggugaacacuugcaA..................................................................... 1
600 seq_375535_x10 ....................ucaccgggugaacUcuugcag..................................................................... 1
601 seq_376911_x4 ....................ucaccggUugaacacuugcag..................................................................... 1
602 seq_373246_x22 ....................ucaccgggugaaAacuugcag..................................................................... 1
603 seq_376668_x5 ....................ucaccgggugaacaUuugcag..................................................................... 1
604 seq_378036_x1 ....................ucaccCggugaacacuugcag..................................................................... 1
605 seq_377651_x2 ....................ucaccgggugaGcacuugcag..................................................................... 1
606 seq_378309_x1 ....................ucaccgggugaacacuuAcag..................................................................... 1
607 seq_375990_x8 ....................ucaccggCugaacacuugcag..................................................................... 1
608 seq_375625_x10 ....................ucaAcgggugaacacuugcag..................................................................... 1
609 seq_376162_x7 ....................Gcaccgggugaacacuugcag..................................................................... 1
610 seq_376583_x5 ....................ucaccgggugaacacGugcag..................................................................... 1
611 seq_361001_x150 ....................ucaccgggugaacacuuCcagu.................................................................... 1
612 seq_369064_x62 ....................ucaccgggugaacacuugcaAu.................................................................... 1
613 seq_366051_x97 ....................ucaccgggugaacaUuugcagu.................................................................... 1
614 seq_359745_x162 ....................ucaccgggugGacacuugcagu.................................................................... 1
615 seq_335879_x674 ....................ucaccgCgugaacacuugcagu.................................................................... 1
616 seq_352711_x226 ....................ucaccgggugaaGacuugcagu.................................................................... 1
617 seq_344621_x340 ....................ucaAcgggugaacacuugcagu.................................................................... 1
618 seq_332159_x841 ....................ucaccgggAgaacacuugcagu.................................................................... 1
619 seq_351534_x242 ....................ucaccgggugaacacuugcagG.................................................................... 1
620 seq_341618_x427 ....................ucaccgggugaacaAuugcagu.................................................................... 1
621 seq_367149_x86 ....................ucaGcgggugaacacuugcagu.................................................................... 1
622 seq_371222_x38 ....................ucaccggNugaacacuugcagu.................................................................... 1
623 seq_335193_x686 ....................ucaccgggugaaAacuugcagu.................................................................... 1
624 seq_363877_x122 ....................ucaccgggugaacacuNgcagu.................................................................... 1
625 seq_149538_x90904....................ucaccgggugaacacuugcagu.................................................................... 0
626 seq_360693_x155 ....................ucaccgggugaacacuugNagu.................................................................... 1
627 seq_363491_x129 ....................ucaccgggugaacacuuAcagu.................................................................... 1
628 seq_356323_x196 ....................ucaccgggugaaUacuugcagu.................................................................... 1
629 seq_355311_x207 ....................ucaccggCugaacacuugcagu.................................................................... 1
630 seq_365443_x103 ....................uGaccgggugaacacuugcagu.................................................................... 1
631 seq_365022_x107 ....................uUaccgggugaacacuugcagu.................................................................... 1
632 seq_375694_x9 ....................Ncaccgggugaacacuugcagu.................................................................... 1
633 seq_356905_x190 ....................ucaccUggugaacacuugcagu.................................................................... 1
634 seq_375974_x8 ....................ucUccgggugaacacuugcagu.................................................................... 1
635 seq_363749_x128 ....................ucaUcgggugaacacuugcagu.................................................................... 1
636 seq_371028_x39 ....................ucaccgggugaacaGuugcagu.................................................................... 1
637 seq_375545_x10 ....................ucacNgggugaacacuugcagu.................................................................... 1
638 seq_354892_x210 ....................ucaccgggugCacacuugcagu.................................................................... 1
639 seq_362156_x140 ....................ucaccgggugaacacuugcaCu.................................................................... 1
640 seq_364468_x114 ....................ucaccgUgugaacacuugcagu.................................................................... 1
641 seq_366524_x92 ....................ucaccggguAaacacuugcagu.................................................................... 1
642 seq_354469_x212 ....................ucaccggguUaacacuugcagu.................................................................... 1
643 seq_331306_x853 ....................ucaccgggCgaacacuugcagu.................................................................... 1
644 seq_359076_x170 ....................ucaccgggugaacacuCgcagu.................................................................... 1
645 seq_365129_x106 ....................ucacUgggugaacacuugcagu.................................................................... 1
646 seq_373223_x23 ....................ucacGgggugaacacuugcagu.................................................................... 1
647 seq_371260_x37 ....................ucaccgggugaacacuugGagu.................................................................... 1
648 seq_358731_x174 ....................ucaccgggugaacacuAgcagu.................................................................... 1
649 seq_342045_x391 ....................ucaccgggugaacacuugcCgu.................................................................... 1
650 seq_362296_x138 ....................ucaccgggugaacacuugcaUu.................................................................... 1
651 seq_365339_x104 ....................ucaccgggugaacacuugAagu.................................................................... 1
652 seq_372468_x28 ....................ucaccgggugaUcacuugcagu.................................................................... 1
653 seq_372496_x27 ....................ucGccgggugaacacuugcagu.................................................................... 1
654 seq_375565_x10 ....................ucaNcgggugaacacuugcagu.................................................................... 1
655 seq_369188_x61 ....................ucaccgggugaCcacuugcagu.................................................................... 1
656 seq_357284_x187 ....................ucaccgggugaacacuugcagA.................................................................... 1
657 seq_367490_x83 ....................uNaccgggugaacacuugcagu.................................................................... 1
658 seq_349174_x270 ....................ucaccgggugaacacuugcagC.................................................................... 1
659 seq_368261_x70 ....................ucaccCggugaacacuugcagu.................................................................... 1
660 seq_363098_x131 ....................ucaccgggugaacacGugcagu.................................................................... 1
661 seq_377118_x3 ....................ucaccNggugaacacuugcagu.................................................................... 1
662 seq_360848_x153 ....................ucaccgAgugaacacuugcagu.................................................................... 1
663 seq_341170_x448 ....................ucaccgggugaacacuuUcagu.................................................................... 1
664 seq_361297_x146 ....................ucaccAggugaacacuugcagu.................................................................... 1
665 cel-miR-37 ....................ucaccgggugaacacuugcagu.................................................................... 0
666 seq_366431_x93 ....................Ccaccgggugaacacuugcagu.................................................................... 1
667 seq_376287_x6 ....................ucNccgggugaacacuugcagu.................................................................... 1
668 seq_345299_x327 ....................ucaccgggugaacacuugcUgu.................................................................... 1
669 seq_354041_x214 ....................uAaccgggugaacacuugcagu.................................................................... 1
670 seq_363999_x122 ....................ucaccggguCaacacuugcagu.................................................................... 1
671 seq_319013_x1597....................ucacAgggugaacacuugcagu.................................................................... 1
672 seq_369126_x62 ....................ucaccgggugaacCcuugcagu.................................................................... 1
673 seq_340154_x508 ....................ucaccgggugaacacuGgcagu.................................................................... 1
674 seq_366337_x94 ....................ucaccggUugaacacuugcagu.................................................................... 1
675 seq_372789_x26 ....................ucaccgggugaGcacuugcagu.................................................................... 1
676 seq_364238_x115 ....................Gcaccgggugaacacuugcagu.................................................................... 1
677 seq_377843_x1 ....................ucaccgggugaacacuuNcagu.................................................................... 1
678 seq_365648_x102 ....................ucaccgggugUacacuugcagu.................................................................... 1
679 seq_371480_x36 ....................ucCccgggugaacacuugcagu.................................................................... 1
680 seq_362569_x133 ....................ucaccgggugaacacuugUagu.................................................................... 1
681 seq_362434_x135 ....................ucaccgggugaacUcuugcagu.................................................................... 1
682 seq_368190_x71 ....................Acaccgggugaacacuugcagu.................................................................... 1
683 seq_330395_x911 ....................ucaccgggugaaNacuugcagu.................................................................... 1
684 seq_370868_x40 ....................ucaccgggugaacGcuugcagu.................................................................... 1
685 seq_323285_x1320....................ucaccgggGgaacacuugcagu.................................................................... 1
686 seq_358020_x178 ....................ucaccggAugaacacuugcagu.................................................................... 1
687 seq_375330_x11 ....................ucaccgggNgaacacuugcagu.................................................................... 1
688 seq_369665_x55 ....................ucaccgggugaacacAugcagu.................................................................... 1
689 seq_357471_x183 ....................ucaccgggugaacacCugcagu.................................................................... 1
690 seq_368539_x67 ....................ucaccgggugaacacuugcGgu.................................................................... 1
691 seq_377977_x1 ....................ucaccgggugaacacuugcagGg................................................................... 1
692 seq_377822_x1 ....................ucaAcgggugaacacuugcagug................................................................... 1
693 seq_377949_x1 ....................ucaccgggugaacacGugcagug................................................................... 1
694 seq_373861_x19 ....................ucaccgggugaacacuugcagug................................................................... 0
695 seq_373378_x22 ....................ucaccgggugaacacuugcaguC................................................................... 1
696 seq_325900_x1251....................ucaccgggugaacacuugcaguA................................................................... 1
697 seq_377687_x2 ....................ucaccgggugaacacuugcUgug................................................................... 1
698 seq_300758_x2851....................ucaccgggugaacacuugcaguU................................................................... 1
699 seq_378118_x1 ....................uAaccgggugaacacuugcagug................................................................... 1
700 seq_377256_x3 ....................ucaccgggugaacacuugcagugA.................................................................. 1
701 seq_377858_x1 ....................ucaccgggugaacacuugcaguCg.................................................................. 1
702 seq_378081_x1 ....................ucaccgggugaacacuugcaguAg.................................................................. 1
703 seq_376855_x4 ....................ucaccgggugaacacuugcagugC.................................................................. 1
704 seq_378276_x1 ....................ucaccgggugaacacuugcaguUg.................................................................. 1
705 seq_377629_x2 ....................ucaccgggugaacacuugcagugg.................................................................. 0
706 seq_378008_x1 ....................uUaccgggugaacacuugcaguggu................................................................. 1
707 seq_378261_x1 ....................ucaccgggugaacacuugcaguggu................................................................. 0
708 seq_377773_x1 ....................ucaccgggugaacacuugcaguggA................................................................. 1
709 seq_378246_x1 ....................ucaccgggugaacacuugcagugUu................................................................. 1
710 seq_377896_x1 ....................ucaccgggugaacacuugcaguggCc................................................................ 1
711 seq_377447_x2 ....................ucaccgggugaacacuugcagugAuc................................................................ 1
712 seq_378068_x1 ....................ucaccgggugaacacuugcaguggucA............................................................... 1
713 seq_377411_x2 ....................ucaccgggugaacacuugcagugguUc............................................................... 1
714 seq_377899_x1 .....................caccgggugaacacuugca...................................................................... 0
715 seq_377943_x1 .....................caAcgggugaacacuugcag..................................................................... 1
716 seq_373131_x23 .....................caccgggugaacacuugcag..................................................................... 0
717 seq_377857_x1 .....................caccgggugaacaUuugcag..................................................................... 1
718 seq_377921_x1 .....................cGccgggugaacacuugcag..................................................................... 1
719 seq_376755_x4 .....................Uaccgggugaacacuugcagu.................................................................... 1
720 seq_378164_x1 .....................caccgggugaacaAuugcagu.................................................................... 1
721 seq_376419_x6 .....................caccgggAgaacacuugcagu.................................................................... 1
722 seq_377715_x2 .....................caccgggugaacacuCgcagu.................................................................... 1
723 seq_378030_x1 .....................caccgggugaacacuGgcagu.................................................................... 1
724 seq_378016_x1 .....................caccggguCaacacuugcagu.................................................................... 1
725 seq_377022_x3 .....................caccgggugaacacuugcagA.................................................................... 1
726 seq_378214_x1 .....................caccgggugaCcacuugcagu.................................................................... 1
727 seq_377835_x1 .....................caccgggugaacacNugcagu.................................................................... 1
728 seq_378161_x1 .....................cacGgggugaacacuugcagu.................................................................... 1
729 seq_374011_x18 .....................caccgggGgaacacuugcagu.................................................................... 1
730 seq_377900_x1 .....................cNccgggugaacacuugcagu.................................................................... 1
731 seq_376260_x7 .....................caccgggugaaAacuugcagu.................................................................... 1
732 seq_348053_x285 .....................caccgggugaacacuugcagu.................................................................... 0
733 seq_377795_x1 .....................caccAggugaacacuugcagu.................................................................... 1
734 seq_377649_x2 .....................caccgggugaacacuuAcagu.................................................................... 1
735 seq_377928_x1 .....................caccgggugaacacGugcagu.................................................................... 1
736 seq_378111_x1 .....................caccgggugaacacuAgcagu.................................................................... 1
737 seq_377202_x3 .....................caccgggugaacacuugcUgu.................................................................... 1
738 seq_377904_x1 .....................cGccgggugaacacuugcagu.................................................................... 1
739 seq_378018_x1 .....................caccgggugaacNcuugcagu.................................................................... 1
740 seq_378263_x1 .....................caccgggugaaGacuugcagu.................................................................... 1
741 seq_377990_x1 .....................cCccgggugaacacuugcagu.................................................................... 1
742 seq_376553_x5 .....................caccgggCgaacacuugcagu.................................................................... 1
743 seq_376688_x5 .....................caccgggugaacacuugcagC.................................................................... 1
744 seq_377461_x2 .....................caccgggugaacacuuCcagu.................................................................... 1
745 seq_377804_x1 .....................caccggAugaacacuugcagu.................................................................... 1
746 seq_376086_x8 .....................caAcgggugaacacuugcagu.................................................................... 1
747 seq_353384_x221 .....................caccgggugaacacuugcaguU................................................................... 1
748 seq_378003_x1 .....................caccgggugaacacuugcagCg................................................................... 1
749 seq_374439_x16 .....................caccgggugaacacuugcagug................................................................... 0
750 seq_361874_x141 .....................caccgggugaacacuugcaguA................................................................... 1
751 seq_377286_x3 .....................caccgggugaacacuugcaguC................................................................... 1
752 seq_378195_x1 .....................caccgggugaacacuugcagugU.................................................................. 1
753 seq_378303_x1 .....................caccgggugaacacuugcagugC.................................................................. 1
754 seq_378250_x1 .....................caccgggugaacacuugcaguUg.................................................................. 1
755 seq_378188_x1 ......................accgggCgaacacuugca...................................................................... 1
756 seq_378220_x1 ......................accgggugaacacAugca...................................................................... 1
757 seq_376094_x8 ......................accgggugaacacuugca...................................................................... 0
758 seq_370405_x44 ......................accgggugaacacuugcag..................................................................... 0
759 seq_377805_x1 ......................accCggugaacacuugcag..................................................................... 1
760 seq_377998_x1 ......................accggUugaacacuugcag..................................................................... 1
761 seq_378298_x1 ......................accgggugaacacuugcCg..................................................................... 1
762 seq_378052_x1 ......................aGcgggugaacacuugcag..................................................................... 1
763 seq_377965_x1 ......................accgggCgaacacuugcag..................................................................... 1
764 seq_378289_x1 ......................accgggugaacacCugcag..................................................................... 1
765 seq_378102_x1 ......................accgggAgaacacuugcag..................................................................... 1
766 seq_377184_x3 ......................accgggugaacacuugcagG.................................................................... 1
767 seq_378152_x1 ......................accgggugaacaUuugcagu.................................................................... 1
768 seq_374359_x16 ......................accgggGgaacacuugcagu.................................................................... 1
769 seq_376473_x6 ......................accgCgugaacacuugcagu.................................................................... 1
770 seq_377986_x1 ......................accgggugaacacuugGagu.................................................................... 1
771 seq_378237_x1 ......................accgggugCacacuugcagu.................................................................... 1
772 seq_377721_x2 ......................accgggugaacacuugUagu.................................................................... 1
773 seq_375124_x12 ......................accCggugaacacuugcagu.................................................................... 1
774 seq_373485_x21 ......................accgggugaacacuuUcagu.................................................................... 1
775 seq_375721_x9 ......................accgggugaaAacuugcagu.................................................................... 1
776 seq_377713_x2 ......................aAcgggugaacacuugcagu.................................................................... 1
777 seq_376951_x4 ......................acAgggugaacacuugcagu.................................................................... 1
778 seq_377609_x2 ......................accgggugaacacuAgcagu.................................................................... 1
779 seq_377930_x1 ......................accggAugaacacuugcagu.................................................................... 1
780 seq_375685_x9 ......................accgggugaacacuugcagC.................................................................... 1
781 seq_377847_x1 ......................accgggugaaUacuugcagu.................................................................... 1
782 seq_377661_x2 ......................accgggugaacacuGgcagu.................................................................... 1
783 seq_333757_x746 ......................accgggugaacacuugcagu.................................................................... 0
784 seq_378076_x1 ......................accgggugaacacCugcagu.................................................................... 1
785 seq_378101_x1 ......................accgggugaaGacuugcagu.................................................................... 1
786 seq_378307_x1 ......................accggCugaacacuugcagu.................................................................... 1
787 seq_373108_x23 ......................accgggugaacacuugcCgu.................................................................... 1
788 seq_376847_x4 ......................accggguCaacacuugcagu.................................................................... 1
789 seq_377789_x1 ......................accgggugaacacuugcaUu.................................................................... 1
790 seq_378184_x1 ......................accgggugaacacuugcUgu.................................................................... 1
791 seq_377441_x2 ......................accAggugaacacuugcagu.................................................................... 1
792 seq_377169_x3 ......................accgggugaacaAuugcagu.................................................................... 1
793 seq_377671_x2 ......................accggguAaacacuugcagu.................................................................... 1
794 seq_377172_x3 ......................accgAgugaacacuugcagu.................................................................... 1
795 seq_375982_x8 ......................accgggugaacacuugcagA.................................................................... 1
796 seq_376341_x6 ......................accgggugaacacuugAagu.................................................................... 1
797 seq_375148_x12 ......................accgggAgaacacuugcagu.................................................................... 1
798 seq_377973_x1 ......................Cccgggugaacacuugcagu.................................................................... 1
799 seq_378156_x1 ......................accgggugaacGcuugcagu.................................................................... 1
800 seq_377549_x2 ......................accgUgugaacacuugcagu.................................................................... 1
801 seq_376598_x5 ......................accgggugaacacuugcaCu.................................................................... 1
802 seq_377593_x2 ......................aGcgggugaacacuugcagu.................................................................... 1
803 seq_377322_x3 ......................acUgggugaacacuugcagu.................................................................... 1
804 seq_376823_x4 ......................accgggugaacCcuugcagu.................................................................... 1
805 seq_378201_x1 ......................aUcgggugaacacuugcagu.................................................................... 1
806 seq_377160_x3 ......................accggguUaacacuugcagu.................................................................... 1
807 seq_378002_x1 ......................accgggugaacacuuAcagu.................................................................... 1
808 seq_377226_x3 ......................accgggugaacacuuCcagu.................................................................... 1
809 seq_377393_x2 ......................accgggugaacacGugcagu.................................................................... 1
810 seq_376971_x4 ......................accgggugaacaNuugcagu.................................................................... 1
811 seq_377601_x2 ......................accggUugaacacuugcagu.................................................................... 1
812 seq_371920_x33 ......................accgggCgaacacuugcagu.................................................................... 1
813 seq_377277_x3 ......................accgggugUacacuugcagu.................................................................... 1
814 seq_377385_x2 ......................accUggugaacacuugcagu.................................................................... 1
815 seq_377611_x2 ......................accgggugGacacuugcagu.................................................................... 1
816 seq_378233_x1 ......................Uccgggugaacacuugcagu.................................................................... 1
817 seq_372411_x29 ......................accgggugaacacuugcaguU................................................................... 1
818 seq_374519_x16 ......................accgggugaacacuugcaguA................................................................... 1
819 seq_378026_x1 ......................accgggugaacacuugcaguUg.................................................................. 1
820 seq_378241_x1 .......................Ucgggugaacacuugcag..................................................................... 1
821 seq_377861_x1 .......................ccgggugaacacuugcag..................................................................... 0
822 seq_377301_x3 .......................ccgggugaacacuugcagu.................................................................... 0
823 seq_377407_x2 .......................Ucgggugaacacuugcagu.................................................................... 1
824 seq_377810_x1 ........................cgggCgaacacuugcagu.................................................................... 1
825 seq_377232_x3 ........................cgggugaacacuugcagu.................................................................... 0
826 seq_378012_x1 ........................................................cucugugaUccagguccugu.................................. 1
827
828
829
830 >chrII:11534525-11540624_11
831 score total 61011.7
832 score for star read(s) 3.9
833 score for read counts 61001.2
834 score for mfe 2
835 score for randfold 1.6
836 score for cons. seed 3
837 miRNA with same seed cbr-miR-35
838 total read count 119663
839 mature read count 119545
840 loop read count 0
841 star read count 118
842 exp fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
843 obs fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
844 pri_seq uuaaaaucgauucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucucu
845 pri_struct ..............((((((((..((((((.((..(((((....(.(((((.((((..........)))).))))).)...)))))..)).))))))..).))))))).. #MM
846 seq_378312_x1 .............................aguguggguguccguugcggugcua........................................................ 0
847 seq_377115_x3 ..............................guguggguguccguugcggugcu......................................................... 0
848 seq_378105_x1 ...............................uguggguguccguugcgg............................................................. 0
849 seq_378286_x1 ...............................ugugggGguccguugcggu............................................................ 1
850 seq_378185_x1 ...............................uguggguguccguugcUgug........................................................... 1
851 seq_378273_x1 ...............................uguggguguccguugcggug........................................................... 0
852 seq_378154_x1 ...............................uguggguguccguugcggugc.......................................................... 0
853 seq_377931_x1 ...............................uguggguguccguugcggugAu......................................................... 1
854 seq_374757_x14 ...............................uguggguguccguugcggugcu......................................................... 0
855 seq_378090_x1 ...............................uguggguguccguugAggugcu......................................................... 1
856 seq_377449_x2 ...............................ugGggguguccguugcggugcua........................................................ 1
857 seq_377794_x1 ...............................uguggguguccguugUggugcua........................................................ 1
858 seq_377787_x1 ...............................uguggguguccgGugcggugcua........................................................ 1
859 seq_378315_x1 ...............................uguggguguccguugcggCgcua........................................................ 1
860 seq_378232_x1 ...............................uguggguCuccguugcggugcua........................................................ 1
861 seq_367968_x76 ...............................uguggguguccguugcggugcua........................................................ 0
862 seq_378200_x1 ...............................uguggguguccguugcggugcGa........................................................ 1
863 seq_377774_x1 ...............................uguggguguccguugcggugUua........................................................ 1
864 seq_378038_x1 ...............................ugugggugucAguugcggugcua........................................................ 1
865 seq_378322_x1 ...............................uguggguguccguugcggugAua........................................................ 1
866 seq_378007_x1 ...............................ugAggguguccguugcggugcua........................................................ 1
867 seq_377837_x1 ...............................uguUgguguccguugcggugcua........................................................ 1
868 seq_376613_x5 ...............................uguggguguccguugcggugcuU........................................................ 1
869 seq_378182_x1 ..................................................................Gguaucaccgggugaacacuugcagu.................. 1
870 seq_378210_x1 ....................................................................uaucaccgggugaacacuugca.................... 0
871 seq_377082_x3 ....................................................................Aaucaccgggugaacacuugcag................... 1
872 seq_376915_x4 ....................................................................uaucaccgggugaacacuugcag................... 0
873 seq_378060_x1 ....................................................................uaucaccgggugaacacuugcagu.................. 0
874 seq_367062_x87 ....................................................................Aaucaccgggugaacacuugcagu.................. 1
875 seq_377289_x3 .....................................................................aucaccgggugaacacuugca.................... 0
876 seq_377605_x2 .....................................................................Cucaccgggugaacacuugca.................... 1
877 seq_378046_x1 .....................................................................aucaccgggugaacacGugca.................... 1
878 seq_377844_x1 .....................................................................aucaccgggugaacacuugcaU................... 1
879 seq_373668_x20 .....................................................................aucaccgggugaacacuugcag................... 0
880 seq_373177_x23 .....................................................................Uucaccgggugaacacuugcag................... 1
881 seq_377762_x1 .....................................................................aucaAcgggugaacacuugcag................... 1
882 seq_377747_x1 .....................................................................aucaccgggugaacaAuugcag................... 1
883 seq_377997_x1 .....................................................................aucaccgggugaaUacuugcag................... 1
884 seq_378288_x1 .....................................................................aucaccgggGgaacacuugcag................... 1
885 seq_377521_x2 .....................................................................aucaccgggugaacacuugAagu.................. 1
886 seq_376839_x4 .....................................................................aucaccgggGgaacacuugcagu.................. 1
887 seq_368805_x66 .....................................................................Cucaccgggugaacacuugcagu.................. 1
888 seq_377917_x1 .....................................................................Uucaccgggugaacacuugcagu.................. 1
889 seq_378067_x1 .....................................................................aucaccggAugaacacuugcagu.................. 1
890 seq_378230_x1 .....................................................................aucaccgggugaacacuugcGgu.................. 1
891 seq_377709_x2 .....................................................................aucaccgggugaacacuugcCgu.................. 1
892 seq_377954_x1 .....................................................................aucaccgggugaacacuCgcagu.................. 1
893 seq_377772_x1 .....................................................................aucaAcgggugaacacuugcagu.................. 1
894 seq_377800_x1 .....................................................................aucaccggUugaacacuugcagu.................. 1
895 seq_377855_x1 .....................................................................aucaccgggugaacacuugcagA.................. 1
896 seq_376775_x4 .....................................................................aucaccgggCgaacacuugcagu.................. 1
897 seq_377782_x1 .....................................................................aucaccgggugaacacuugcUgu.................. 1
898 seq_377963_x1 .....................................................................auGaccgggugaacacuugcagu.................. 1
899 seq_377958_x1 .....................................................................aucaccgCgugaacacuugcagu.................. 1
900 seq_376831_x4 .....................................................................aucaccgggAgaacacuugcagu.................. 1
901 seq_378177_x1 .....................................................................aucaccgggugaacacuGgcagu.................. 1
902 seq_377353_x2 .....................................................................aucaccgggugaacacuugcagC.................. 1
903 seq_378037_x1 .....................................................................aucaccgAgugaacacuugcagu.................. 1
904 seq_377639_x2 .....................................................................aucaccCggugaacacuugcagu.................. 1
905 seq_358376_x178 .....................................................................aucaccgggugaacacuugcagu.................. 0
906 seq_378265_x1 .....................................................................aucaccgggugaacCcuugcagu.................. 1
907 seq_378165_x1 .....................................................................aucaccgggugaNcacuugcagu.................. 1
908 seq_377783_x1 .....................................................................aucaccggCugaacacuugcagu.................. 1
909 seq_377109_x3 .....................................................................aucaccgggugaacacuugcaUu.................. 1
910 seq_377133_x3 .....................................................................aucaccgggugaacacuugcaguU................. 1
911 seq_377527_x2 .....................................................................aucaccgggugaacacuugcaguA................. 1
912 seq_377971_x1 ......................................................................ucaAcgggugaacacuug...................... 1
913 seq_377445_x2 ......................................................................ucaccgggugaaGacuug...................... 1
914 seq_378317_x1 ......................................................................uAaccgggugaacacuug...................... 1
915 seq_378106_x1 ......................................................................ucaccgggugaaAacuug...................... 1
916 seq_377951_x1 ......................................................................ucaccgggGgaacacuug...................... 1
917 seq_378095_x1 ......................................................................Acaccgggugaacacuug...................... 1
918 seq_377918_x1 ......................................................................ucaccgggugaacacuuU...................... 1
919 seq_373608_x20 ......................................................................ucaccgggugaacacuug...................... 0
920 seq_378005_x1 ......................................................................ucaccgggugaCcacuug...................... 1
921 seq_378295_x1 ......................................................................ucaccgUgugaacacuug...................... 1
922 seq_377897_x1 ......................................................................ucaccgggugaaGacuugc..................... 1
923 seq_373012_x24 ......................................................................ucaccgggugaacacuugc..................... 0
924 seq_378284_x1 ......................................................................ucaccgggugaacaGuugc..................... 1
925 seq_376461_x6 ......................................................................ucaccgAgugaacacuugca.................... 1
926 seq_327151_x1237......................................................................ucaccgggugaacacuugca.................... 0
927 seq_377912_x1 ......................................................................uNaccgggugaacacuugca.................... 1
928 seq_376568_x5 ......................................................................ucaccggCugaacacuugca.................... 1
929 seq_377829_x1 ......................................................................ucaccgggugaUcacuugca.................... 1
930 seq_377473_x2 ......................................................................ucaccgggugaacacGugca.................... 1
931 seq_376653_x5 ......................................................................ucaccUggugaacacuugca.................... 1
932 seq_377553_x2 ......................................................................uUaccgggugaacacuugca.................... 1
933 seq_377253_x3 ......................................................................ucaccgggugaacUcuugca.................... 1
934 seq_377557_x2 ......................................................................ucacUgggugaacacuugca.................... 1
935 seq_377830_x1 ......................................................................ucaccgggugaCcacuugca.................... 1
936 seq_372988_x24 ......................................................................ucacAgggugaacacuugca.................... 1
937 seq_378074_x1 ......................................................................ucaccgggugaaNacuugca.................... 1
938 seq_377838_x1 ......................................................................ucaccgggugaacacuuNca.................... 1
939 seq_377565_x2 ......................................................................ucaccgggugaacacuugcG.................... 1
940 seq_378270_x1 ......................................................................Acaccgggugaacacuugca.................... 1
941 seq_376751_x4 ......................................................................ucaccggUugaacacuugca.................... 1
942 seq_376735_x4 ......................................................................ucaccgggugaacacuuUca.................... 1
943 seq_378080_x1 ......................................................................ucaccgggugGacacuugca.................... 1
944 seq_377555_x2 ......................................................................ucaUcgggugaacacuugca.................... 1
945 seq_378238_x1 ......................................................................ucaccgggugaacacuCgca.................... 1
946 seq_378205_x1 ......................................................................ucaccgggugaacacuugUa.................... 1
947 seq_376795_x4 ......................................................................ucGccgggugaacacuugca.................... 1
948 seq_377824_x1 ......................................................................Gcaccgggugaacacuugca.................... 1
949 seq_377154_x3 ......................................................................ucaccggguUaacacuugca.................... 1
950 seq_377335_x2 ......................................................................ucaAcgggugaacacuugca.................... 1
951 seq_378299_x1 ......................................................................ucaccgggugaacGcuugca.................... 1
952 seq_377405_x2 ......................................................................ucaccgggugaaGacuugca.................... 1
953 seq_376543_x5 ......................................................................uGaccgggugaacacuugca.................... 1
954 seq_377850_x1 ......................................................................ucaccggNugaacacuugca.................... 1
955 seq_377397_x2 ......................................................................ucaccgUgugaacacuugca.................... 1
956 seq_376443_x6 ......................................................................ucaccgggugaaUacuugca.................... 1
957 seq_376078_x8 ......................................................................ucaccgggGgaacacuugca.................... 1
958 seq_376663_x5 ......................................................................ucaccgggugaacacuugcU.................... 1
959 seq_375385_x10 ......................................................................ucaccgggugaacacuGgca.................... 1
960 seq_376783_x4 ......................................................................ucaccgggugaacacuuAca.................... 1
961 seq_378034_x1 ......................................................................ucaccgggugCacacuugca.................... 1
962 seq_373975_x18 ......................................................................ucaccgggAgaacacuugca.................... 1
963 seq_377802_x1 ......................................................................ucaccgggugaacacCugca.................... 1
964 seq_378327_x1 ......................................................................ucaccgggugaacacuugAa.................... 1
965 seq_377757_x1 ......................................................................ucaccggguCaacacuugca.................... 1
966 seq_376943_x4 ......................................................................ucaccgggugaacaAuugca.................... 1
967 seq_377615_x2 ......................................................................uAaccgggugaacacuugca.................... 1
968 seq_375883_x9 ......................................................................ucaccgCgugaacacuugca.................... 1
969 seq_377821_x1 ......................................................................ucaccgggugaacCcuugca.................... 1
970 seq_377148_x3 ......................................................................ucaccgggugaacacuuCca.................... 1
971 seq_378321_x1 ......................................................................ucaccCggugaacacuugca.................... 1
972 seq_374729_x14 ......................................................................ucaccgggugaaAacuugca.................... 1
973 seq_377541_x2 ......................................................................ucaccggAugaacacuugca.................... 1
974 seq_377190_x3 ......................................................................ucaccgggugaacacuAgca.................... 1
975 seq_377667_x2 ......................................................................ucaGcgggugaacacuugca.................... 1
976 seq_377891_x1 ......................................................................ucaccAggugaacacuugca.................... 1
977 seq_377046_x3 ......................................................................ucaccgggugaacaGuugca.................... 1
978 seq_375220_x11 ......................................................................ucaccgggCgaacacuugca.................... 1
979 seq_376573_x5 ......................................................................ucaccgggugaaGacuugcag................... 1
980 seq_375990_x8 ......................................................................ucaccggCugaacacuugcag................... 1
981 seq_372737_x26 ......................................................................ucaccgCgugaacacuugcag................... 1
982 seq_376155_x7 ......................................................................Ccaccgggugaacacuugcag................... 1
983 seq_377265_x3 ......................................................................uUaccgggugaacacuugcag................... 1
984 seq_376521_x6 ......................................................................uAaccgggugaacacuugcag................... 1
985 seq_378103_x1 ......................................................................ucNccgggugaacacuugcag................... 1
986 seq_376923_x4 ......................................................................ucaccgggugaacacAugcag................... 1
987 seq_375184_x12 ......................................................................ucaccgggugaacacuugcUg................... 1
988 seq_377779_x1 ......................................................................ucaccgggugaacaGuugcag................... 1
989 seq_377547_x2 ......................................................................ucaccgggugaacacuugcaA................... 1
990 seq_377025_x3 ......................................................................ucUccgggugaacacuugcag................... 1
991 seq_377788_x1 ......................................................................ucaccgggugaacacuNgcag................... 1
992 seq_373937_x19 ......................................................................ucaccgggugaacacuuUcag................... 1
993 seq_376563_x5 ......................................................................ucaccgUgugaacacuugcag................... 1
994 seq_377651_x2 ......................................................................ucaccgggugaGcacuugcag................... 1
995 seq_378132_x1 ......................................................................ucacGgggugaacacuugcag................... 1
996 seq_372890_x25 ......................................................................ucaccgggugaacaAuugcag................... 1
997 seq_374771_x14 ......................................................................ucaccgggugaacacuGgcag................... 1
998 seq_377437_x2 ......................................................................ucaGcgggugaacacuugcag................... 1
999 seq_378036_x1 ......................................................................ucaccCggugaacacuugcag................... 1
1000 seq_376347_x6 ......................................................................ucaccgAgugaacacuugcag................... 1
1001 seq_377515_x2 ......................................................................ucaccgggugaacCcuugcag................... 1
1002 seq_376807_x4 ......................................................................ucaccgggugUacacuugcag................... 1
1003 seq_370787_x41 ......................................................................ucaccgggCgaacacuugcag................... 1
1004 seq_375308_x11 ......................................................................ucaccgggugaacacCugcag................... 1
1005 seq_376253_x7 ......................................................................ucaccggguUaacacuugcag................... 1
1006 seq_378309_x1 ......................................................................ucaccgggugaacacuuAcag................... 1
1007 seq_367812_x78 ......................................................................ucacAgggugaacacuugcag................... 1
1008 seq_376931_x4 ......................................................................ucaccgggugGacacuugcag................... 1
1009 seq_376274_x7 ......................................................................ucaccggguAaacacuugcag................... 1
1010 seq_376911_x4 ......................................................................ucaccggUugaacacuugcag................... 1
1011 seq_376126_x8 ......................................................................ucaccUggugaacacuugcag................... 1
1012 seq_376583_x5 ......................................................................ucaccgggugaacacGugcag................... 1
1013 seq_372173_x31 ......................................................................ucaccgggugaaNacuugcag................... 1
1014 seq_376643_x5 ......................................................................ucaccgggugCacacuugcag................... 1
1015 seq_376668_x5 ......................................................................ucaccgggugaacaUuugcag................... 1
1016 seq_296962_x3796......................................................................ucaccgggugaacacuugcag................... 0
1017 seq_375958_x8 ......................................................................ucaccgggugaacacuugUag................... 1
1018 seq_376588_x5 ......................................................................ucaUcgggugaacacuugcag................... 1
1019 seq_375793_x9 ......................................................................ucaccgggugaacacuugcCg................... 1
1020 seq_377729_x2 ......................................................................ucaccgggugaUcacuugcag................... 1
1021 seq_375415_x10 ......................................................................ucaccgggugaacacuugAag................... 1
1022 seq_377067_x3 ......................................................................ucaccgggugaCcacuugcag................... 1
1023 seq_376603_x5 ......................................................................Acaccgggugaacacuugcag................... 1
1024 seq_376425_x6 ......................................................................ucaccgggugaacacuAgcag................... 1
1025 seq_376162_x7 ......................................................................Gcaccgggugaacacuugcag................... 1
1026 seq_377333_x2 ......................................................................uNaccgggugaacacuugcag................... 1
1027 seq_376070_x8 ......................................................................ucaccgggugaacacuugcaC................... 1
1028 seq_377786_x1 ......................................................................ucaccgggugaacacuugcGg................... 1
1029 seq_377723_x2 ......................................................................ucGccgggugaacacuugcag................... 1
1030 seq_373246_x22 ......................................................................ucaccgggugaaAacuugcag................... 1
1031 seq_376389_x6 ......................................................................ucaccAggugaacacuugcag................... 1
1032 seq_377355_x2 ......................................................................ucaccgggugaacacuugGag................... 1
1033 seq_377295_x3 ......................................................................ucaccgggugaacacuCgcag................... 1
1034 seq_377435_x2 ......................................................................ucaccggguCaacacuugcag................... 1
1035 seq_376835_x4 ......................................................................ucaccggAugaacacuugcag................... 1
1036 seq_378141_x1 ......................................................................ucaccggNugaacacuugcag................... 1
1037 seq_376204_x7 ......................................................................ucaccgggugaacacuuCcag................... 1
1038 seq_371788_x33 ......................................................................ucaccgggAgaacacuugcag................... 1
1039 seq_375535_x10 ......................................................................ucaccgggugaacUcuugcag................... 1
1040 seq_375766_x9 ......................................................................ucaccgggugaaUacuugcag................... 1
1041 seq_369371_x60 ......................................................................ucaccgggGgaacacuugcag................... 1
1042 seq_374375_x16 ......................................................................ucaccgggugaacacuugcaU................... 1
1043 seq_376983_x4 ......................................................................ucCccgggugaacacuugcag................... 1
1044 seq_376176_x7 ......................................................................ucaccgggugaacacuugNag................... 1
1045 seq_376593_x5 ......................................................................uGaccgggugaacacuugcag................... 1
1046 seq_376190_x7 ......................................................................ucacUgggugaacacuugcag................... 1
1047 seq_375625_x10 ......................................................................ucaAcgggugaacacuugcag................... 1
1048 seq_360848_x153 ......................................................................ucaccgAgugaacacuugcagu.................. 1
1049 seq_375545_x10 ......................................................................ucacNgggugaacacuugcagu.................. 1
1050 seq_358020_x178 ......................................................................ucaccggAugaacacuugcagu.................. 1
1051 seq_375330_x11 ......................................................................ucaccgggNgaacacuugcagu.................. 1
1052 seq_362156_x140 ......................................................................ucaccgggugaacacuugcaCu.................. 1
1053 seq_323285_x1320......................................................................ucaccgggGgaacacuugcagu.................. 1
1054 seq_366524_x92 ......................................................................ucaccggguAaacacuugcagu.................. 1
1055 seq_364238_x115 ......................................................................Gcaccgggugaacacuugcagu.................. 1
1056 seq_354892_x210 ......................................................................ucaccgggugCacacuugcagu.................. 1
1057 seq_361001_x150 ......................................................................ucaccgggugaacacuuCcagu.................. 1
1058 seq_368261_x70 ......................................................................ucaccCggugaacacuugcagu.................. 1
1059 seq_359745_x162 ......................................................................ucaccgggugGacacuugcagu.................. 1
1060 seq_345299_x327 ......................................................................ucaccgggugaacacuugcUgu.................. 1
1061 seq_369126_x62 ......................................................................ucaccgggugaacCcuugcagu.................. 1
1062 seq_377843_x1 ......................................................................ucaccgggugaacacuuNcagu.................. 1
1063 seq_369064_x62 ......................................................................ucaccgggugaacacuugcaAu.................. 1
1064 seq_357471_x183 ......................................................................ucaccgggugaacacCugcagu.................. 1
1065 seq_362296_x138 ......................................................................ucaccgggugaacacuugcaUu.................. 1
1066 seq_376287_x6 ......................................................................ucNccgggugaacacuugcagu.................. 1
1067 seq_372789_x26 ......................................................................ucaccgggugaGcacuugcagu.................. 1
1068 cel-miR-37 ......................................................................ucaccgggugaacacuugcagu.................. 0
1069 seq_371028_x39 ......................................................................ucaccgggugaacaGuugcagu.................. 1
1070 seq_367490_x83 ......................................................................uNaccgggugaacacuugcagu.................. 1
1071 seq_357284_x187 ......................................................................ucaccgggugaacacuugcagA.................. 1
1072 seq_341170_x448 ......................................................................ucaccgggugaacacuuUcagu.................. 1
1073 seq_332159_x841 ......................................................................ucaccgggAgaacacuugcagu.................. 1
1074 seq_342045_x391 ......................................................................ucaccgggugaacacuugcCgu.................. 1
1075 seq_370868_x40 ......................................................................ucaccgggugaacGcuugcagu.................. 1
1076 seq_372468_x28 ......................................................................ucaccgggugaUcacuugcagu.................. 1
1077 seq_335193_x686 ......................................................................ucaccgggugaaAacuugcagu.................. 1
1078 seq_361297_x146 ......................................................................ucaccAggugaacacuugcagu.................. 1
1079 seq_330395_x911 ......................................................................ucaccgggugaaNacuugcagu.................. 1
1080 seq_341618_x427 ......................................................................ucaccgggugaacaAuugcagu.................. 1
1081 seq_371222_x38 ......................................................................ucaccggNugaacacuugcagu.................. 1
1082 seq_356323_x196 ......................................................................ucaccgggugaaUacuugcagu.................. 1
1083 seq_352711_x226 ......................................................................ucaccgggugaaGacuugcagu.................. 1
1084 seq_362434_x135 ......................................................................ucaccgggugaacUcuugcagu.................. 1
1085 seq_349174_x270 ......................................................................ucaccgggugaacacuugcagC.................. 1
1086 seq_363749_x128 ......................................................................ucaUcgggugaacacuugcagu.................. 1
1087 seq_354041_x214 ......................................................................uAaccgggugaacacuugcagu.................. 1
1088 seq_365022_x107 ......................................................................uUaccgggugaacacuugcagu.................. 1
1089 seq_331306_x853 ......................................................................ucaccgggCgaacacuugcagu.................. 1
1090 seq_363491_x129 ......................................................................ucaccgggugaacacuuAcagu.................. 1
1091 seq_366431_x93 ......................................................................Ccaccgggugaacacuugcagu.................. 1
1092 seq_335879_x674 ......................................................................ucaccgCgugaacacuugcagu.................. 1
1093 seq_365648_x102 ......................................................................ucaccgggugUacacuugcagu.................. 1
1094 seq_371260_x37 ......................................................................ucaccgggugaacacuugGagu.................. 1
1095 seq_363999_x122 ......................................................................ucaccggguCaacacuugcagu.................. 1
1096 seq_375694_x9 ......................................................................Ncaccgggugaacacuugcagu.................. 1
1097 seq_368190_x71 ......................................................................Acaccgggugaacacuugcagu.................. 1
1098 seq_354469_x212 ......................................................................ucaccggguUaacacuugcagu.................. 1
1099 seq_358731_x174 ......................................................................ucaccgggugaacacuAgcagu.................. 1
1100 seq_360693_x155 ......................................................................ucaccgggugaacacuugNagu.................. 1
1101 seq_375565_x10 ......................................................................ucaNcgggugaacacuugcagu.................. 1
1102 seq_363098_x131 ......................................................................ucaccgggugaacacGugcagu.................. 1
1103 seq_319013_x1597......................................................................ucacAgggugaacacuugcagu.................. 1
1104 seq_356905_x190 ......................................................................ucaccUggugaacacuugcagu.................. 1
1105 seq_340154_x508 ......................................................................ucaccgggugaacacuGgcagu.................. 1
1106 seq_355311_x207 ......................................................................ucaccggCugaacacuugcagu.................. 1
1107 seq_149538_x90904......................................................................ucaccgggugaacacuugcagu.................. 0
1108 seq_366051_x97 ......................................................................ucaccgggugaacaUuugcagu.................. 1
1109 seq_373223_x23 ......................................................................ucacGgggugaacacuugcagu.................. 1
1110 seq_364468_x114 ......................................................................ucaccgUgugaacacuugcagu.................. 1
1111 seq_375974_x8 ......................................................................ucUccgggugaacacuugcagu.................. 1
1112 seq_363877_x122 ......................................................................ucaccgggugaacacuNgcagu.................. 1
1113 seq_368539_x67 ......................................................................ucaccgggugaacacuugcGgu.................. 1
1114 seq_377118_x3 ......................................................................ucaccNggugaacacuugcagu.................. 1
1115 seq_344621_x340 ......................................................................ucaAcgggugaacacuugcagu.................. 1
1116 seq_367149_x86 ......................................................................ucaGcgggugaacacuugcagu.................. 1
1117 seq_372496_x27 ......................................................................ucGccgggugaacacuugcagu.................. 1
1118 seq_369665_x55 ......................................................................ucaccgggugaacacAugcagu.................. 1
1119 seq_366337_x94 ......................................................................ucaccggUugaacacuugcagu.................. 1
1120 seq_362569_x133 ......................................................................ucaccgggugaacacuugUagu.................. 1
1121 seq_365339_x104 ......................................................................ucaccgggugaacacuugAagu.................. 1
1122 seq_369188_x61 ......................................................................ucaccgggugaCcacuugcagu.................. 1
1123 seq_371480_x36 ......................................................................ucCccgggugaacacuugcagu.................. 1
1124 seq_351534_x242 ......................................................................ucaccgggugaacacuugcagG.................. 1
1125 seq_365129_x106 ......................................................................ucacUgggugaacacuugcagu.................. 1
1126 seq_365443_x103 ......................................................................uGaccgggugaacacuugcagu.................. 1
1127 seq_359076_x170 ......................................................................ucaccgggugaacacuCgcagu.................. 1
1128 seq_300758_x2851......................................................................ucaccgggugaacacuugcaguU................. 1
1129 seq_377949_x1 ......................................................................ucaccgggugaacacGugcagug................. 1
1130 seq_377822_x1 ......................................................................ucaAcgggugaacacuugcagug................. 1
1131 seq_373861_x19 ......................................................................ucaccgggugaacacuugcagug................. 0
1132 seq_373378_x22 ......................................................................ucaccgggugaacacuugcaguC................. 1
1133 seq_377687_x2 ......................................................................ucaccgggugaacacuugcUgug................. 1
1134 seq_377977_x1 ......................................................................ucaccgggugaacacuugcagGg................. 1
1135 seq_378118_x1 ......................................................................uAaccgggugaacacuugcagug................. 1
1136 seq_325900_x1251......................................................................ucaccgggugaacacuugcaguA................. 1
1137 seq_376855_x4 ......................................................................ucaccgggugaacacuugcagugC................ 1
1138 seq_377858_x1 ......................................................................ucaccgggugaacacuugcaguCg................ 1
1139 seq_378276_x1 ......................................................................ucaccgggugaacacuugcaguUg................ 1
1140 seq_377629_x2 ......................................................................ucaccgggugaacacuugcagugg................ 0
1141 seq_378081_x1 ......................................................................ucaccgggugaacacuugcaguAg................ 1
1142 seq_377256_x3 ......................................................................ucaccgggugaacacuugcagugA................ 1
1143 seq_378246_x1 ......................................................................ucaccgggugaacacuugcagugUu............... 1
1144 seq_378008_x1 ......................................................................uUaccgggugaacacuugcaguggu............... 1
1145 seq_378261_x1 ......................................................................ucaccgggugaacacuugcaguggu............... 0
1146 seq_377773_x1 ......................................................................ucaccgggugaacacuugcaguggA............... 1
1147 seq_377896_x1 ......................................................................ucaccgggugaacacuugcaguggCc.............. 1
1148 seq_377447_x2 ......................................................................ucaccgggugaacacuugcagugAuc.............. 1
1149 seq_377411_x2 ......................................................................ucaccgggugaacacuugcagugguUc............. 1
1150 seq_378068_x1 ......................................................................ucaccgggugaacacuugcaguggucA............. 1
1151 seq_377899_x1 .......................................................................caccgggugaacacuugca.................... 0
1152 seq_373131_x23 .......................................................................caccgggugaacacuugcag................... 0
1153 seq_377921_x1 .......................................................................cGccgggugaacacuugcag................... 1
1154 seq_377857_x1 .......................................................................caccgggugaacaUuugcag................... 1
1155 seq_377943_x1 .......................................................................caAcgggugaacacuugcag................... 1
1156 seq_378214_x1 .......................................................................caccgggugaCcacuugcagu.................. 1
1157 seq_374011_x18 .......................................................................caccgggGgaacacuugcagu.................. 1
1158 seq_377835_x1 .......................................................................caccgggugaacacNugcagu.................. 1
1159 seq_378263_x1 .......................................................................caccgggugaaGacuugcagu.................. 1
1160 seq_378018_x1 .......................................................................caccgggugaacNcuugcagu.................. 1
1161 seq_376086_x8 .......................................................................caAcgggugaacacuugcagu.................. 1
1162 seq_377900_x1 .......................................................................cNccgggugaacacuugcagu.................. 1
1163 seq_377928_x1 .......................................................................caccgggugaacacGugcagu.................. 1
1164 seq_377461_x2 .......................................................................caccgggugaacacuuCcagu.................. 1
1165 seq_376688_x5 .......................................................................caccgggugaacacuugcagC.................. 1
1166 seq_376260_x7 .......................................................................caccgggugaaAacuugcagu.................. 1
1167 seq_378164_x1 .......................................................................caccgggugaacaAuugcagu.................. 1
1168 seq_377715_x2 .......................................................................caccgggugaacacuCgcagu.................. 1
1169 seq_378016_x1 .......................................................................caccggguCaacacuugcagu.................. 1
1170 seq_376755_x4 .......................................................................Uaccgggugaacacuugcagu.................. 1
1171 seq_377795_x1 .......................................................................caccAggugaacacuugcagu.................. 1
1172 seq_377649_x2 .......................................................................caccgggugaacacuuAcagu.................. 1
1173 seq_376553_x5 .......................................................................caccgggCgaacacuugcagu.................. 1
1174 seq_377804_x1 .......................................................................caccggAugaacacuugcagu.................. 1
1175 seq_378111_x1 .......................................................................caccgggugaacacuAgcagu.................. 1
1176 seq_377022_x3 .......................................................................caccgggugaacacuugcagA.................. 1
1177 seq_378030_x1 .......................................................................caccgggugaacacuGgcagu.................. 1
1178 seq_376419_x6 .......................................................................caccgggAgaacacuugcagu.................. 1
1179 seq_377990_x1 .......................................................................cCccgggugaacacuugcagu.................. 1
1180 seq_348053_x285 .......................................................................caccgggugaacacuugcagu.................. 0
1181 seq_377904_x1 .......................................................................cGccgggugaacacuugcagu.................. 1
1182 seq_377202_x3 .......................................................................caccgggugaacacuugcUgu.................. 1
1183 seq_378161_x1 .......................................................................cacGgggugaacacuugcagu.................. 1
1184 seq_378003_x1 .......................................................................caccgggugaacacuugcagCg................. 1
1185 seq_353384_x221 .......................................................................caccgggugaacacuugcaguU................. 1
1186 seq_361874_x141 .......................................................................caccgggugaacacuugcaguA................. 1
1187 seq_374439_x16 .......................................................................caccgggugaacacuugcagug................. 0
1188 seq_377286_x3 .......................................................................caccgggugaacacuugcaguC................. 1
1189 seq_378303_x1 .......................................................................caccgggugaacacuugcagugC................ 1
1190 seq_378195_x1 .......................................................................caccgggugaacacuugcagugU................ 1
1191 seq_378250_x1 .......................................................................caccgggugaacacuugcaguUg................ 1
1192 seq_376094_x8 ........................................................................accgggugaacacuugca.................... 0
1193 seq_378188_x1 ........................................................................accgggCgaacacuugca.................... 1
1194 seq_378220_x1 ........................................................................accgggugaacacAugca.................... 1
1195 seq_378102_x1 ........................................................................accgggAgaacacuugcag................... 1
1196 seq_377805_x1 ........................................................................accCggugaacacuugcag................... 1
1197 seq_378298_x1 ........................................................................accgggugaacacuugcCg................... 1
1198 seq_377965_x1 ........................................................................accgggCgaacacuugcag................... 1
1199 seq_370405_x44 ........................................................................accgggugaacacuugcag................... 0
1200 seq_378289_x1 ........................................................................accgggugaacacCugcag................... 1
1201 seq_377998_x1 ........................................................................accggUugaacacuugcag................... 1
1202 seq_378052_x1 ........................................................................aGcgggugaacacuugcag................... 1
1203 seq_377609_x2 ........................................................................accgggugaacacuAgcagu.................. 1
1204 seq_377671_x2 ........................................................................accggguAaacacuugcagu.................. 1
1205 seq_378237_x1 ........................................................................accgggugCacacuugcagu.................. 1
1206 seq_375721_x9 ........................................................................accgggugaaAacuugcagu.................. 1
1207 seq_333757_x746 ........................................................................accgggugaacacuugcagu.................. 0
1208 seq_378184_x1 ........................................................................accgggugaacacuugcUgu.................. 1
1209 seq_377441_x2 ........................................................................accAggugaacacuugcagu.................. 1
1210 seq_378101_x1 ........................................................................accgggugaaGacuugcagu.................. 1
1211 seq_377611_x2 ........................................................................accgggugGacacuugcagu.................. 1
1212 seq_377721_x2 ........................................................................accgggugaacacuugUagu.................. 1
1213 seq_378156_x1 ........................................................................accgggugaacGcuugcagu.................. 1
1214 seq_376847_x4 ........................................................................accggguCaacacuugcagu.................. 1
1215 seq_377385_x2 ........................................................................accUggugaacacuugcagu.................. 1
1216 seq_378307_x1 ........................................................................accggCugaacacuugcagu.................. 1
1217 seq_378076_x1 ........................................................................accgggugaacacCugcagu.................. 1
1218 seq_376823_x4 ........................................................................accgggugaacCcuugcagu.................. 1
1219 seq_375685_x9 ........................................................................accgggugaacacuugcagC.................. 1
1220 seq_377160_x3 ........................................................................accggguUaacacuugcagu.................. 1
1221 seq_377661_x2 ........................................................................accgggugaacacuGgcagu.................. 1
1222 seq_377601_x2 ........................................................................accggUugaacacuugcagu.................. 1
1223 seq_377172_x3 ........................................................................accgAgugaacacuugcagu.................. 1
1224 seq_376473_x6 ........................................................................accgCgugaacacuugcagu.................. 1
1225 seq_375982_x8 ........................................................................accgggugaacacuugcagA.................. 1
1226 seq_373108_x23 ........................................................................accgggugaacacuugcCgu.................. 1
1227 seq_377549_x2 ........................................................................accgUgugaacacuugcagu.................. 1
1228 seq_375124_x12 ........................................................................accCggugaacacuugcagu.................. 1
1229 seq_377226_x3 ........................................................................accgggugaacacuuCcagu.................. 1
1230 seq_377847_x1 ........................................................................accgggugaaUacuugcagu.................. 1
1231 seq_377973_x1 ........................................................................Cccgggugaacacuugcagu.................. 1
1232 seq_378201_x1 ........................................................................aUcgggugaacacuugcagu.................. 1
1233 seq_373485_x21 ........................................................................accgggugaacacuuUcagu.................. 1
1234 seq_377169_x3 ........................................................................accgggugaacaAuugcagu.................. 1
1235 seq_376598_x5 ........................................................................accgggugaacacuugcaCu.................. 1
1236 seq_377277_x3 ........................................................................accgggugUacacuugcagu.................. 1
1237 seq_371920_x33 ........................................................................accgggCgaacacuugcagu.................. 1
1238 seq_376971_x4 ........................................................................accgggugaacaNuugcagu.................. 1
1239 seq_377789_x1 ........................................................................accgggugaacacuugcaUu.................. 1
1240 seq_377184_x3 ........................................................................accgggugaacacuugcagG.................. 1
1241 seq_374359_x16 ........................................................................accgggGgaacacuugcagu.................. 1
1242 seq_377393_x2 ........................................................................accgggugaacacGugcagu.................. 1
1243 seq_378233_x1 ........................................................................Uccgggugaacacuugcagu.................. 1
1244 seq_377986_x1 ........................................................................accgggugaacacuugGagu.................. 1
1245 seq_378002_x1 ........................................................................accgggugaacacuuAcagu.................. 1
1246 seq_377593_x2 ........................................................................aGcgggugaacacuugcagu.................. 1
1247 seq_378152_x1 ........................................................................accgggugaacaUuugcagu.................. 1
1248 seq_377713_x2 ........................................................................aAcgggugaacacuugcagu.................. 1
1249 seq_375148_x12 ........................................................................accgggAgaacacuugcagu.................. 1
1250 seq_376951_x4 ........................................................................acAgggugaacacuugcagu.................. 1
1251 seq_377322_x3 ........................................................................acUgggugaacacuugcagu.................. 1
1252 seq_376341_x6 ........................................................................accgggugaacacuugAagu.................. 1
1253 seq_377930_x1 ........................................................................accggAugaacacuugcagu.................. 1
1254 seq_374519_x16 ........................................................................accgggugaacacuugcaguA................. 1
1255 seq_372411_x29 ........................................................................accgggugaacacuugcaguU................. 1
1256 seq_378026_x1 ........................................................................accgggugaacacuugcaguUg................ 1
1257 seq_377861_x1 .........................................................................ccgggugaacacuugcag................... 0
1258 seq_378241_x1 .........................................................................Ucgggugaacacuugcag................... 1
1259 seq_377301_x3 .........................................................................ccgggugaacacuugcagu.................. 0
1260 seq_377407_x2 .........................................................................Ucgggugaacacuugcagu.................. 1
1261 seq_377810_x1 ..........................................................................cgggCgaacacuugcagu.................. 1
1262 seq_377232_x3 ..........................................................................cgggugaacacuugcagu.................. 0
1263
1264
1265
1266 >chrII:11534525-11540624_17
1267 score total 17007.3
1268 score for star read(s) 3.9
1269 score for read counts 16996.7
1270 score for mfe 2.1
1271 score for randfold 1.6
1272 score for cons. seed 3
1273 miRNA with same seed cbr-miR-35
1274 total read count 33350
1275 mature read count 33300
1276 loop read count 0
1277 star read count 50
1278 exp ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
1279 obs ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
1280 pri_seq uggugucuccgaaccuccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggugcau
1281 pri_struct .(((........))).(((((((((((((.(((.((((((((((.((.(((((.(((.......))).))))).)))))))))))).))).))))))))..)))))..... #MM
1282 seq_377533_x2 ..............................aguggauguaugccaugaugau........................................................... 0
1283 seq_378330_x1 ..............................aguggUuguaugccaugaugaua.......................................................... 1
1284 seq_372324_x29 ..............................aguggauguaugccaugaugaua.......................................................... 0
1285 seq_377836_x1 ..............................aguggauguaugccaugUugaua.......................................................... 1
1286 seq_377982_x1 ..............................aguggauguaugcUaugaugaua.......................................................... 1
1287 seq_377969_x1 ..............................aguggauguaugccaugaAgaua.......................................................... 1
1288 seq_377763_x1 ..............................aguggauguaugccauUaugaua.......................................................... 1
1289 seq_378104_x1 ..............................aguggauguUugccaugaugaua.......................................................... 1
1290 seq_377950_x1 ..............................aguggauguauUccaugaugaua.......................................................... 1
1291 seq_378126_x1 ..............................aguggauguaugccaugaugauG.......................................................... 1
1292 seq_378062_x1 ..............................aguggauguaugccaugaugCua.......................................................... 1
1293 seq_377681_x2 ..............................aguggaugGaugccaugaugaua.......................................................... 1
1294 seq_377987_x1 ..............................aguggauguaugccaugaugGua.......................................................... 1
1295 seq_376329_x6 ..............................aguggauguaugccaugaugauaU......................................................... 1
1296 seq_378173_x1 ...............................guggauguaugccaugaugauaaga....................................................... 0
1297 seq_378011_x1 ..................................................................ccGaucaccggguguacaucagcu..................... 1
1298 seq_377862_x1 ...................................................................cuaucaccggguguacaucag....................... 0
1299 seq_377748_x1 ...................................................................Auaucaccggguguacaucagc...................... 1
1300 seq_375595_x10 ...................................................................cuaucaccggguguacaucagc...................... 0
1301 seq_377699_x2 ...................................................................cuaucaccggguguacaucagcu..................... 0
1302 seq_377832_x1 ...................................................................cuaucaccggguguacaucagUu..................... 1
1303 seq_378096_x1 ...................................................................cuaucaccggguguacaGcagcu..................... 1
1304 seq_377817_x1 ...................................................................cuaucaccggguguacaucagcA..................... 1
1305 seq_378035_x1 ...................................................................cCaucaccggguguacaucagcuaa................... 1
1306 seq_377679_x2 ....................................................................Aaucaccggguguacaucagcu..................... 1
1307 seq_369825_x52 ....................................................................Aaucaccggguguacaucagcuaa................... 1
1308 seq_377760_x1 .....................................................................aucaccggguguacaucag....................... 0
1309 seq_378000_x1 .....................................................................Cucaccggguguacaucagcua.................... 1
1310 seq_378278_x1 .....................................................................aucaccggguguacaucaCcua.................... 1
1311 seq_376431_x6 .....................................................................aucaccggguguacaucagcua.................... 0
1312 seq_377784_x1 .....................................................................aucaccggguguacaucaUcuaa................... 1
1313 seq_371721_x34 .....................................................................aucaccggguguacaucagcuaa................... 0
1314 seq_378142_x1 .....................................................................aGcaccggguguacaucagcuaa................... 1
1315 seq_378021_x1 .....................................................................aAcaccggguguacaucagcuaa................... 1
1316 seq_377769_x1 .....................................................................aucaccgggAguacaucagcuaa................... 1
1317 seq_374423_x16 .....................................................................Cucaccggguguacaucagcuaa................... 1
1318 seq_378169_x1 .....................................................................aucaccCgguguacaucagcuaa................... 1
1319 seq_377968_x1 .....................................................................aucaAcggguguacaucagcuaa................... 1
1320 seq_377627_x2 .....................................................................aucaccggguguacaucagcuaaA.................. 1
1321 seq_377489_x2 .....................................................................aucaccggguguacaucagcuaaU.................. 1
1322 seq_378296_x1 ......................................................................ucaccggUuguacaucag....................... 1
1323 seq_377770_x1 ......................................................................ucaccggguguacaucNg....................... 1
1324 seq_377477_x2 ......................................................................ucaccggguguacaucaA....................... 1
1325 seq_372550_x27 ......................................................................ucaccggguguacaucag....................... 0
1326 seq_368936_x64 ......................................................................ucaccggguguacaucagc...................... 0
1327 seq_377979_x1 ......................................................................ucaccggguguaNaucagc...................... 1
1328 seq_377984_x1 ......................................................................ucaccggguguacaucaUc...................... 1
1329 seq_377865_x1 ......................................................................ucaccggguguacaucaAc...................... 1
1330 seq_377751_x1 ......................................................................ucaccgggCguacaucagc...................... 1
1331 seq_378287_x1 ......................................................................ucaccgggugGacaucagc...................... 1
1332 seq_377845_x1 ......................................................................ucaccgggGguacaucagc...................... 1
1333 seq_377833_x1 ......................................................................ucaccgggugCacaucagc...................... 1
1334 seq_378221_x1 ......................................................................ucaccggguguacCucagc...................... 1
1335 seq_378110_x1 ......................................................................ucacUggguguacaucagc...................... 1
1336 seq_377981_x1 ......................................................................ucaccggguguaUaucagcu..................... 1
1337 seq_378183_x1 ......................................................................ucaccggguguaNaucagcu..................... 1
1338 seq_378231_x1 ......................................................................ucaccggguguacaucagGu..................... 1
1339 seq_377689_x2 ......................................................................ucaccggguguacaucaUcu..................... 1
1340 seq_378193_x1 ......................................................................ucaccggguguacaGcagcu..................... 1
1341 seq_377823_x1 ......................................................................ucaccgggugCacaucagcu..................... 1
1342 seq_377826_x1 ......................................................................ucaccgggCguacaucagcu..................... 1
1343 seq_357837_x183 ......................................................................ucaccggguguacaucagcu..................... 0
1344 seq_378217_x1 ......................................................................ucaccgggGguacaucagcu..................... 1
1345 seq_377799_x1 ......................................................................ucaccggguguacauAagcu..................... 1
1346 seq_377485_x2 ......................................................................ucaccgggugGacaucagcu..................... 1
1347 seq_377942_x1 ......................................................................ucaccgggugAacaucagcu..................... 1
1348 seq_376359_x6 ......................................................................ucacAggguguacaucagcu..................... 1
1349 seq_378125_x1 ......................................................................ucaccggguguacUucagcu..................... 1
1350 seq_377759_x1 ......................................................................ucaccggguguacaucagUu..................... 1
1351 seq_378324_x1 ......................................................................ucaccggguguacaCcagcu..................... 1
1352 seq_378274_x1 ......................................................................ucaccUgguguacaucagcu..................... 1
1353 seq_377967_x1 ......................................................................ucaccggguguacaucaCcua.................... 1
1354 seq_375775_x9 ......................................................................ucaccgggugCacaucagcua.................... 1
1355 seq_377926_x1 ......................................................................ucaccggguguacaucUgcua.................... 1
1356 seq_377028_x3 ......................................................................ucaccggguguacaucagNua.................... 1
1357 seq_377911_x1 ......................................................................ucaccggguCuacaucagcua.................... 1
1358 seq_377625_x2 ......................................................................ucaccggguguaUaucagcua.................... 1
1359 seq_377735_x2 ......................................................................ucaccggguguaGaucagcua.................... 1
1360 seq_378240_x1 ......................................................................ucaccggguguacauGagcua.................... 1
1361 seq_377703_x2 ......................................................................Gcaccggguguacaucagcua.................... 1
1362 seq_376299_x6 ......................................................................ucaccgggCguacaucagcua.................... 1
1363 seq_377091_x3 ......................................................................ucaccggguguacaucagcuC.................... 1
1364 seq_378044_x1 ......................................................................ucaccggguguacaGcagcua.................... 1
1365 seq_377016_x3 ......................................................................ucaccgggugGacaucagcua.................... 1
1366 seq_377040_x3 ......................................................................ucaccgggugAacaucagcua.................... 1
1367 seq_377587_x2 ......................................................................ucaccggguguacaucagcGa.................... 1
1368 seq_377677_x2 ......................................................................ucaccggguUuacaucagcua.................... 1
1369 seq_377316_x3 ......................................................................ucaccggguguacaucagcAa.................... 1
1370 seq_378223_x1 ......................................................................ucaccggguAuacaucagcua.................... 1
1371 seq_378198_x1 ......................................................................ucaccggguguacaucagGua.................... 1
1372 seq_374137_x18 ......................................................................ucaccgggAguacaucagcua.................... 1
1373 seq_378149_x1 ......................................................................uAaccggguguacaucagcua.................... 1
1374 seq_328388_x1017......................................................................ucaccggguguacaucagcua.................... 0
1375 seq_377771_x1 ......................................................................ucaccggguguCcaucagcua.................... 1
1376 seq_372264_x30 ......................................................................ucacAggguguacaucagcua.................... 1
1377 seq_377922_x1 ......................................................................ucaAcggguguacaucagcua.................... 1
1378 seq_376558_x5 ......................................................................ucaccggguguacaucagcuU.................... 1
1379 seq_376843_x4 ......................................................................ucaccggguguacaucagAua.................... 1
1380 seq_376239_x7 ......................................................................ucaccggguguaNaucagcua.................... 1
1381 seq_378048_x1 ......................................................................ucaccggAuguacaucagcua.................... 1
1382 seq_378097_x1 ......................................................................Ccaccggguguacaucagcua.................... 1
1383 seq_377864_x1 ......................................................................ucaccggguguacUucagcua.................... 1
1384 seq_378235_x1 ......................................................................ucaccAgguguacaucagcua.................... 1
1385 seq_376467_x6 ......................................................................ucaccggguguacaucaUcua.................... 1
1386 seq_377501_x2 ......................................................................ucaccggguguacaucaAcua.................... 1
1387 seq_378310_x1 ......................................................................ucaccggguguacaucagcuG.................... 1
1388 seq_376967_x4 ......................................................................ucaccggguguacaucCgcua.................... 1
1389 seq_378279_x1 ......................................................................ucaGcggguguacaucagcua.................... 1
1390 seq_377337_x2 ......................................................................uUaccggguguacaucagcua.................... 1
1391 seq_375319_x11 ......................................................................ucaccgggGguacaucagcua.................... 1
1392 seq_378227_x1 ......................................................................Ncaccggguguacaucagcua.................... 1
1393 seq_378166_x1 ......................................................................ucaccggguguacaucagcCa.................... 1
1394 seq_377262_x3 ......................................................................ucaccgCguguacaucagcua.................... 1
1395 seq_377043_x3 ......................................................................ucaccggguguacaucagUua.................... 1
1396 seq_378148_x1 ......................................................................ucaccggguguacGucagcua.................... 1
1397 seq_376883_x4 ......................................................................ucaccggguguacauAagcua.................... 1
1398 seq_377244_x3 ......................................................................ucaccggguguaAaucagcua.................... 1
1399 seq_377139_x3 ......................................................................ucacUggguguacaucagcua.................... 1
1400 seq_378225_x1 ......................................................................ucaNcggguguacaucagcua.................... 1
1401 seq_376919_x4 ......................................................................ucaccUgguguacaucagcua.................... 1
1402 seq_377223_x3 ......................................................................ucaccggCuguacaucagcua.................... 1
1403 seq_367890_x78 ......................................................................ucaccggguguaAaucagcuaa................... 1
1404 seq_344961_x338 ......................................................................ucaccggguguacaucagcuaU................... 1
1405 seq_370908_x40 ......................................................................ucaccggAuguacaucagcuaa................... 1
1406 seq_372049_x31 ......................................................................ucaccAgguguacaucagcuaa................... 1
1407 seq_375374_x11 ......................................................................ucaccggguguacGucagcuaa................... 1
1408 seq_370360_x45 ......................................................................ucaccggguguacaucagcuUa................... 1
1409 seq_371334_x37 ......................................................................ucaUcggguguacaucagcuaa................... 1
1410 seq_376365_x6 ......................................................................ucaccggguguacauGagcuaa................... 1
1411 seq_372964_x24 ......................................................................ucaccggguguacaucagcGaa................... 1
1412 seq_374869_x13 ......................................................................ucaccggguguUcaucagcuaa................... 1
1413 seq_375352_x11 ......................................................................ucaccggguguCcaucagcuaa................... 1
1414 seq_355926_x199 ......................................................................ucaccggguguacaucaUcuaa................... 1
1415 seq_352937_x224 ......................................................................ucaccgggCguacaucagcuaa................... 1
1416 seq_377737_x2 ......................................................................ucNccggguguacaucagcuaa................... 1
1417 seq_360066_x159 ......................................................................ucaccgggAguacaucagcuaa................... 1
1418 seq_370622_x42 ......................................................................ucaccggguUuacaucagcuaa................... 1
1419 seq_371585_x34 ......................................................................ucaccUgguguacaucagcuaa................... 1
1420 seq_374241_x17 ......................................................................ucaGcggguguacaucagcuaa................... 1
1421 seq_240442_x25577......................................................................ucaccggguguacaucagcuaa................... 0
1422 seq_373527_x21 ......................................................................uNaccggguguacaucagcuaa................... 1
1423 seq_342825_x384 ......................................................................ucacAggguguacaucagcuaa................... 1
1424 seq_370080_x48 ......................................................................uAaccggguguacaucagcuaa................... 1
1425 seq_378040_x1 ......................................................................ucaccgggNguacaucagcuaa................... 1
1426 seq_369773_x52 ......................................................................ucaccggguguaUaucagcuaa................... 1
1427 cel-miR-40 ......................................................................ucaccggguguacaucagcuaa................... 0
1428 seq_374785_x14 ......................................................................ucCccggguguacaucagcuaa................... 1
1429 seq_368871_x65 ......................................................................ucaAcggguguacaucagcuaa................... 1
1430 seq_349713_x268 ......................................................................ucaccggguguaNaucagcuaa................... 1
1431 seq_374841_x14 ......................................................................ucaccggguguacaucagcAaa................... 1
1432 seq_371619_x34 ......................................................................ucacUggguguacaucagcuaa................... 1
1433 seq_375585_x10 ......................................................................ucaccggguguacaucagGuaa................... 1
1434 seq_370828_x40 ......................................................................ucaccggCuguacaucagcuaa................... 1
1435 seq_372915_x25 ......................................................................ucaccggguguacCucagcuaa................... 1
1436 seq_370449_x44 ......................................................................uUaccggguguacaucagcuaa................... 1
1437 seq_372111_x31 ......................................................................ucaccggguCuacaucagcuaa................... 1
1438 seq_372604_x27 ......................................................................uGaccggguguacaucagcuaa................... 1
1439 seq_368331_x70 ......................................................................ucaccggguguacaucagAuaa................... 1
1440 seq_376698_x5 ......................................................................ucaNcggguguacaucagcuaa................... 1
1441 seq_375515_x10 ......................................................................ucaccggguguacaucagcCaa................... 1
1442 seq_368401_x69 ......................................................................ucaccggguguacaucaCcuaa................... 1
1443 seq_374487_x16 ......................................................................Gcaccggguguacaucagcuaa................... 1
1444 seq_370222_x46 ......................................................................ucaccggguguacaucagNuaa................... 1
1445 seq_374155_x18 ......................................................................ucaccggguAuacaucagcuaa................... 1
1446 seq_374999_x13 ......................................................................ucaccCgguguacaucagcuaa................... 1
1447 seq_373648_x20 ......................................................................Ccaccggguguacaucagcuaa................... 1
1448 seq_366797_x89 ......................................................................ucaccggguguacaucagcuaC................... 1
1449 seq_375363_x11 ......................................................................ucaccggguguGcaucagcuaa................... 1
1450 seq_371145_x39 ......................................................................ucaccggguguacaucagcuGa................... 1
1451 seq_347479_x287 ......................................................................ucaccgggGguacaucagcuaa................... 1
1452 seq_376713_x5 ......................................................................ucUccggguguacaucagcuaa................... 1
1453 seq_375966_x8 ......................................................................ucGccggguguacaucagcuaa................... 1
1454 seq_375038_x13 ......................................................................Acaccggguguacaucagcuaa................... 1
1455 seq_351287_x247 ......................................................................ucaccgggugGacaucagcuaa................... 1
1456 seq_371953_x32 ......................................................................ucaccgAguguacaucagcuaa................... 1
1457 seq_377058_x3 ......................................................................Ncaccggguguacaucagcuaa................... 1
1458 seq_370314_x46 ......................................................................ucaccggguguacaucGgcuaa................... 1
1459 seq_375665_x10 ......................................................................ucaccggguguacaCcagcuaa................... 1
1460 seq_375865_x9 ......................................................................ucaccggNuguacaucagcuaa................... 1
1461 seq_367573_x83 ......................................................................ucaccggguguacaucagcuCa................... 1
1462 seq_364353_x115 ......................................................................ucaccgCguguacaucagcuaa................... 1
1463 seq_369249_x61 ......................................................................ucaccggguguaGaucagcuaa................... 1
1464 seq_369877_x52 ......................................................................ucaccggguguacaucUgcuaa................... 1
1465 seq_369720_x53 ......................................................................ucaccggguguacaucaAcuaa................... 1
1466 seq_374101_x18 ......................................................................ucaccggUuguacaucagcuaa................... 1
1467 seq_367406_x84 ......................................................................ucaccggguguacaucCgcuaa................... 1
1468 seq_369490_x59 ......................................................................ucaccgggugAacaucagcuaa................... 1
1469 seq_375703_x9 ......................................................................ucaccggguguacaucagcuaG................... 1
1470 seq_376134_x7 ......................................................................ucaccggguguacaAcagcuaa................... 1
1471 seq_368118_x72 ......................................................................ucaccggguguacaucagUuaa................... 1
1472 seq_348903_x271 ......................................................................ucaccgggugCacaucagcuaa................... 1
1473 seq_377617_x2 ......................................................................ucacGggguguacaucagcuaa................... 1
1474 seq_364804_x110 ......................................................................ucaccggguguacauAagcuaa................... 1
1475 seq_366707_x90 ......................................................................ucaccggguguacauUagcuaa................... 1
1476 seq_373899_x19 ......................................................................ucaccgUguguacaucagcuaa................... 1
1477 seq_370175_x47 ......................................................................ucaccggguguacaucNgcuaa................... 1
1478 seq_372711_x26 ......................................................................ucaccggguguacaGcagcuaa................... 1
1479 seq_369549_x59 ......................................................................ucaccggguguacUucagcuaa................... 1
1480 seq_343569_x355 ......................................................................ucaccggguguacaucagcuaaU.................. 1
1481 seq_372440_x28 ......................................................................ucaccggguguacaucagcuaaC.................. 1
1482 seq_374029_x18 ......................................................................ucaccggguguacaucagcuaag.................. 0
1483 seq_378259_x1 ......................................................................ucaccgggAguacaucagcuaag.................. 1
1484 seq_339613_x541 ......................................................................ucaccggguguacaucagcuaaA.................. 1
1485 seq_377595_x2 ......................................................................ucaccggguguacaucagcuaagU................. 1
1486 seq_377749_x1 ......................................................................ucaccggguguacaucagcuaagC................. 1
1487 seq_378291_x1 ......................................................................ucaccggguguacaucagcuaagg................. 0
1488 seq_378129_x1 ......................................................................ucaccggguguacaucagcuaaAg................. 1
1489 seq_378039_x1 ......................................................................ucaccggguguacaucagcuaaggC................ 1
1490 seq_376232_x7 .......................................................................caccggguguacaucagcua.................... 0
1491 seq_377964_x1 .......................................................................caccggguguacNucagcuaa................... 1
1492 seq_377241_x3 .......................................................................caccggguguaGaucagcuaa................... 1
1493 seq_377764_x1 .......................................................................Uaccggguguacaucagcuaa................... 1
1494 seq_377933_x1 .......................................................................caccUgguguacaucagcuaa................... 1
1495 seq_377635_x2 .......................................................................caccgggugAacaucagcuaa................... 1
1496 seq_368044_x74 .......................................................................caccggguguacaucagcuaa................... 0
1497 seq_377455_x2 .......................................................................caccgggGguacaucagcuaa................... 1
1498 seq_378316_x1 .......................................................................caccggguguacaucaCcuaa................... 1
1499 seq_377467_x2 .......................................................................caccggguguacaucagcuaag.................. 0
1500 seq_374065_x18 .......................................................................caccggguguacaucagcuaaU.................. 1
1501 seq_377535_x2 .......................................................................caccggguguacaucagcuaaC.................. 1
1502 seq_373747_x19 .......................................................................caccggguguacaucagcuaaA.................. 1
1503 seq_377585_x2 ........................................................................accggguguacaucagcu..................... 0
1504 seq_376955_x4 ........................................................................accggguguacaucagcua.................... 0
1505 seq_378020_x1 ........................................................................accgggugCacaucagcuaa................... 1
1506 seq_378224_x1 ........................................................................acAggguguacaucagcuaa................... 1
1507 seq_377860_x1 ........................................................................accggguguaUaucagcuaa................... 1
1508 seq_377220_x3 ........................................................................accggguguacaucagGuaa................... 1
1509 seq_377745_x1 ........................................................................Uccggguguacaucagcuaa................... 1
1510 seq_377887_x1 ........................................................................accgUguguacaucagcuaa................... 1
1511 seq_378139_x1 ........................................................................accggguguacaucagcCaa................... 1
1512 seq_378244_x1 ........................................................................accgCguguacaucagcuaa................... 1
1513 seq_377939_x1 ........................................................................accggguAuacaucagcuaa................... 1
1514 seq_377569_x2 ........................................................................accggguguacaucUgcuaa................... 1
1515 seq_375275_x11 ........................................................................accgggCguacaucagcuaa................... 1
1516 seq_378306_x1 ........................................................................acGggguguacaucagcuaa................... 1
1517 seq_377280_x3 ........................................................................accggguguacauAagcuaa................... 1
1518 seq_351776_x240 ........................................................................accggguguacaucagcuaa................... 0
1519 seq_378004_x1 ........................................................................accggguguacaucaUcuaa................... 1
1520 seq_378267_x1 ........................................................................accggguguacaucagcuaC................... 1
1521 seq_377157_x3 ........................................................................accggguguacaucagAuaa................... 1
1522 seq_376633_x5 ........................................................................accggguguacaucCgcuaa................... 1
1523 seq_376767_x4 ........................................................................accCgguguacaucagcuaa................... 1
1524 seq_378206_x1 ........................................................................accggguguacaGcagcuaa................... 1
1525 seq_377499_x2 ........................................................................accggguguacaucaCcuaa................... 1
1526 seq_377607_x2 ........................................................................accggguguacaucagcuCa................... 1
1527 seq_377469_x2 ........................................................................aGcggguguacaucagcuaa................... 1
1528 seq_377623_x2 ........................................................................accggguguacaucagcuaU................... 1
1529 seq_376503_x6 ........................................................................accgggugGacaucagcuaa................... 1
1530 seq_377579_x2 ........................................................................accgggAguacaucagcuaa................... 1
1531 seq_377347_x2 ........................................................................aAcggguguacaucagcuaa................... 1
1532 seq_377905_x1 ........................................................................Nccggguguacaucagcuaa................... 1
1533 seq_376618_x5 ........................................................................accgggGguacaucagcuaa................... 1
1534 seq_377367_x2 ........................................................................accggguguacCucagcuaa................... 1
1535 seq_377310_x3 ........................................................................accggguguacaNcagcuaa................... 1
1536 seq_376759_x4 ........................................................................accggguguacaucagcuaaA.................. 1
1537 seq_377869_x1 ........................................................................accggguguacaucagcuaaU.................. 1
1538 seq_378311_x1 .........................................................................ccggguguacaucagcua.................... 0
1539 seq_378258_x1 .........................................................................cAggguguacaucagcuaa................... 1
1540 seq_377659_x2 .........................................................................ccggguguacaucagcuaa................... 0
1541
1542
1543
1544 >chrII:11534525-11540624_9
1545 score total 7482.8
1546 score for star read(s) 3.9
1547 score for read counts 7472.1
1548 score for mfe 2.2
1549 score for randfold 1.6
1550 score for cons. seed 3
1551 miRNA with same seed cbr-miR-35
1552 total read count 14668
1553 mature read count 14617
1554 loop read count 0
1555 star read count 51
1556 exp fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
1557 obs fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
1558 pri_seq ccacuugcuccaccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcggaaaga
1559 pri_struct ............((((.((((((((.(((.((.(((((((((((..(((.((((((.......).))))).))).))))))))))).)).))).))))))))))))..... #MM
1560 seq_377936_x1 .............................cgccaauuuucgcuucagCgc............................................................. 1
1561 seq_377645_x2 .............................cgccaauuuucgcuucagugcu............................................................ 0
1562 seq_377966_x1 .............................cgccaauuuucgcuucaguUcu............................................................ 1
1563 seq_378302_x1 .............................cgAcaauuuucgcuucagugcua........................................................... 1
1564 seq_371297_x37 .............................cgccaauuuucgcuucagugcua........................................................... 0
1565 seq_378170_x1 .............................cgccaauuuucgcuucagCgcua........................................................... 1
1566 seq_378042_x1 .............................cgccaauuuucgcuucagGgcua........................................................... 1
1567 seq_377163_x3 .............................cgccaauuuucgcuucaUugcua........................................................... 1
1568 seq_377387_x2 .............................cgccaauuuucgcuucagugcuaU.......................................................... 1
1569 seq_378257_x1 ..............................gccaauuuucgcuucaAugcua........................................................... 1
1570 seq_378254_x1 ..............................gccaCuuuucgcuucagugcua........................................................... 1
1571 seq_378197_x1 ...................................................................cuaucaccgggCgaaaauucgca..................... 1
1572 seq_373804_x19 ....................................................................Aaucaccgggugaaaauucgcaug................... 1
1573 seq_378229_x1 ....................................................................uCucaccgggugaaaauucgcaug................... 1
1574 seq_378144_x1 .....................................................................aucaAcgggugaaaauucgcaug................... 1
1575 seq_375076_x12 .....................................................................aucaccgggugaaaauucgcaug................... 0
1576 seq_375525_x10 .....................................................................Cucaccgggugaaaauucgcaug................... 1
1577 seq_378009_x1 .....................................................................Uucaccgggugaaaauucgcaug................... 1
1578 seq_377761_x1 ......................................................................ucaccgggugaaaauucgc...................... 0
1579 seq_377369_x2 ......................................................................ucacAgggugaaaauucgca..................... 1
1580 seq_377937_x1 ......................................................................ucaccgggugaaaauuAgca..................... 1
1581 seq_372815_x25 ......................................................................ucaccgggugaaaauucgca..................... 0
1582 seq_378192_x1 ......................................................................ucaccgggCgaaaauucgca..................... 1
1583 seq_378019_x1 ......................................................................ucaccgggugUaaauucgca..................... 1
1584 seq_377785_x1 ......................................................................ucaccgggugaUaauucgca..................... 1
1585 seq_377409_x2 ......................................................................ucaccgggGgaaaauucgca..................... 1
1586 seq_377790_x1 ......................................................................ucaccgggugaaaauucgUa..................... 1
1587 seq_378098_x1 ......................................................................ucaccgggugaaaauucUcau.................... 1
1588 seq_377907_x1 ......................................................................ucaccgggugaaaauucgcCu.................... 1
1589 seq_352482_x229 ......................................................................ucaccgggugaaaauucgcau.................... 0
1590 seq_377756_x1 ......................................................................ucaccgUgugaaaauucgcau.................... 1
1591 seq_376515_x6 ......................................................................ucacAgggugaaaauucgcau.................... 1
1592 seq_377952_x1 ......................................................................ucaccgggugUaaauucgcau.................... 1
1593 seq_377985_x1 ......................................................................ucacUgggugaaaauucgcau.................... 1
1594 seq_377691_x2 ......................................................................ucaccggguUaaaauucgcau.................... 1
1595 seq_377934_x1 ......................................................................ucaccgggugaaaauucAcau.................... 1
1596 seq_377124_x3 ......................................................................ucaccgggGgaaaauucgcau.................... 1
1597 seq_378069_x1 ......................................................................uGaccgggugaaaauucgcau.................... 1
1598 seq_378028_x1 ......................................................................ucaccgCgugaaaauucgcau.................... 1
1599 seq_376323_x6 ......................................................................ucaccgggugaaaauuAgcau.................... 1
1600 seq_378269_x1 ......................................................................ucaccgggugaaGauucgcau.................... 1
1601 seq_377993_x1 ......................................................................ucaccgggugaaaauucgcaG.................... 1
1602 seq_378033_x1 ......................................................................ucaAcgggugaaaauucgcau.................... 1
1603 seq_378271_x1 ......................................................................uAaccgggugaaaauucgcau.................... 1
1604 seq_377121_x3 ......................................................................ucaccgggugaaNauucgcau.................... 1
1605 seq_377497_x2 ......................................................................ucaccgggugaaaauuGgcau.................... 1
1606 seq_373728_x19 ......................................................................ucaccgggugaCaauucgcaug................... 1
1607 seq_360225_x157 ......................................................................ucaccgggCgaaaauucgcaug................... 1
1608 seq_373268_x22 ......................................................................ucaccgggugaaaauucgcauC................... 1
1609 seq_377271_x3 ......................................................................ucaccgggugaaaauucgGaug................... 1
1610 seq_374343_x16 ......................................................................Gcaccgggugaaaauucgcaug................... 1
1611 seq_373506_x21 ......................................................................ucaccAggugaaaauucgcaug................... 1
1612 seq_372204_x30 ......................................................................ucaccgggugaaCauucgcaug................... 1
1613 seq_347181_x298 ......................................................................ucacAgggugaaaauucgcaug................... 1
1614 seq_361731_x143 ......................................................................ucaccgggAgaaaauucgcaug................... 1
1615 seq_375874_x9 ......................................................................ucaccgggugaaaauucgcaCg................... 1
1616 seq_378088_x1 ......................................................................ucaccgggugaaaauucNcaug................... 1
1617 seq_373588_x20 ......................................................................ucaccgggugaaaauucgcUug................... 1
1618 seq_377851_x1 ......................................................................Ncaccgggugaaaauucgcaug................... 1
1619 seq_373548_x20 ......................................................................ucaccggCugaaaauucgcaug................... 1
1620 seq_370128_x47 ......................................................................ucaccgggugCaaauucgcaug................... 1
1621 seq_374119_x18 ......................................................................ucaccgggugaaaauucgUaug................... 1
1622 seq_373060_x24 ......................................................................ucaccgAgugaaaauucgcaug................... 1
1623 seq_373443_x21 ......................................................................ucaGcgggugaaaauucgcaug................... 1
1624 seq_374627_x15 ......................................................................ucaccggguAaaaauucgcaug................... 1
1625 seq_374973_x13 ......................................................................ucaccgggugaUaauucgcaug................... 1
1626 seq_373400_x22 ......................................................................ucaccgggugaaaauucgcCug................... 1
1627 seq_372577_x27 ......................................................................ucaccgggugaaaauucAcaug................... 1
1628 seq_375505_x10 ......................................................................uNaccgggugaaaauucgcaug................... 1
1629 seq_368739_x66 ......................................................................ucaccgggugaaaauucUcaug................... 1
1630 seq_376703_x5 ......................................................................ucaccgggugaaUauucgcaug................... 1
1631 seq_345948_x316 ......................................................................ucaccgggugaaaauucgcauU................... 1
1632 seq_373290_x22 ......................................................................ucaccgggugaaaauuNgcaug................... 1
1633 seq_376062_x8 ......................................................................ucacGgggugaaaauucgcaug................... 1
1634 seq_376353_x6 ......................................................................ucGccgggugaaaauucgcaug................... 1
1635 seq_371653_x34 ......................................................................ucaccgggugaaaauucgcauA................... 1
1636 seq_375748_x9 ......................................................................Ccaccgggugaaaauucgcaug................... 1
1637 seq_373628_x20 ......................................................................ucaccUggugaaaauucgcaug................... 1
1638 seq_377581_x2 ......................................................................ucaccgggugaaaGuucgcaug................... 1
1639 seq_351036_x251 ......................................................................ucaccgggGgaaaauucgcaug................... 1
1640 seq_376110_x8 ......................................................................ucaccgggugaaaauGcgcaug................... 1
1641 seq_376218_x7 ......................................................................Acaccgggugaaaauucgcaug................... 1
1642 seq_377357_x2 ......................................................................ucaNcgggugaaaauucgcaug................... 1
1643 seq_375136_x12 ......................................................................ucaccgggugaaaauCcgcaug................... 1
1644 seq_366148_x95 ......................................................................ucaccgggugaaaauuAgcaug................... 1
1645 seq_374895_x13 ......................................................................ucaccgggugaaaauucCcaug................... 1
1646 seq_374701_x14 ......................................................................ucaccgggugaaaauuGgcaug................... 1
1647 seq_375475_x10 ......................................................................ucCccgggugaaaauucgcaug................... 1
1648 seq_371985_x32 ......................................................................ucaccgggugGaaauucgcaug................... 1
1649 seq_372353_x29 ......................................................................uUaccgggugaaaauucgcaug................... 1
1650 seq_368673_x66 ......................................................................ucaccgCgugaaaauucgcaug................... 1
1651 seq_372382_x29 ......................................................................ucacUgggugaaaauucgcaug................... 1
1652 seq_373785_x19 ......................................................................ucaccggAugaaaauucgcaug................... 1
1653 seq_266019_x11571......................................................................ucaccgggugaaaauucgcaug................... 0
1654 seq_372234_x30 ......................................................................ucaccgggugaaaauuUgcaug................... 1
1655 seq_373842_x19 ......................................................................ucaccgggugaaaauucgAaug................... 1
1656 seq_375655_x10 ......................................................................ucaccgggugaaaCuucgcaug................... 1
1657 seq_375998_x8 ......................................................................ucaccgggugaaaauucgcGug................... 1
1658 seq_376281_x6 ......................................................................ucaccgggugaaaauucgcaAg................... 1
1659 seq_375208_x12 ......................................................................ucaccggguCaaaauucgcaug................... 1
1660 seq_376141_x7 ......................................................................ucaccgggugaaaauAcgcaug................... 1
1661 seq_375645_x10 ......................................................................ucaccCggugaaaauucgcaug................... 1
1662 seq_372865_x25 ......................................................................ucaccgggugUaaauucgcaug................... 1
1663 seq_367656_x78 ......................................................................ucaccgggugaaNauucgcaug................... 1
1664 seq_375064_x12 ......................................................................ucaccgggugaGaauucgcaug................... 1
1665 seq_375605_x10 ......................................................................ucaccgggugaaaaGucgcaug................... 1
1666 seq_374391_x16 ......................................................................ucaUcgggugaaaauucgcaug................... 1
1667 seq_378049_x1 ......................................................................ucaccggNugaaaauucgcaug................... 1
1668 seq_375297_x11 ......................................................................ucaccgggugaaaaCucgcaug................... 1
1669 seq_375425_x10 ......................................................................ucaccgggugaaaaAucgcaug................... 1
1670 seq_372685_x26 ......................................................................uAaccgggugaaaauucgcaug................... 1
1671 seq_369431_x59 ......................................................................ucaAcgggugaaaauucgcaug................... 1
1672 seq_375051_x13 ......................................................................ucaccggguUaaaauucgcaug................... 1
1673 seq_375495_x10 ......................................................................ucaccggUugaaaauucgcaug................... 1
1674 seq_374551_x16 ......................................................................ucaccgggugaaGauucgcaug................... 1
1675 seq_374687_x14 ......................................................................uGaccgggugaaaauucgcaug................... 1
1676 seq_377349_x2 ......................................................................ucaccgggNgaaaauucgcaug................... 1
1677 seq_374799_x14 ......................................................................ucaccgggugaaaauucgNaug................... 1
1678 seq_371444_x36 ......................................................................ucaccgggugaaaauucgcaGg................... 1
1679 seq_375712_x9 ......................................................................ucaccgUgugaaaauucgcaug................... 1
1680 cel-miR-36 ......................................................................ucaccgggugaaaauucgcaug................... 0
1681 seq_374258_x17 ......................................................................ucaccgggugaaaUuucgcaug................... 1
1682 seq_378058_x1 ......................................................................ucaccgggugaaaauucgcaGgg.................. 1
1683 seq_375635_x10 ......................................................................ucaccgggugaaaauucgcaugA.................. 1
1684 seq_377329_x2 ......................................................................ucaccgggugaaaauucgcaugC.................. 1
1685 seq_371408_x36 ......................................................................ucaccgggugaaaauucgcaugU.................. 1
1686 seq_378065_x1 ......................................................................ucaccgggugaaaauucgcauggC................. 1
1687 seq_377890_x1 .......................................................................caccgggugaaaCuucgcaug................... 1
1688 seq_377471_x2 .......................................................................caccgggGgaaaauucgcaug................... 1
1689 seq_377827_x1 .......................................................................cacUgggugaaaauucgcaug................... 1
1690 seq_377073_x3 .......................................................................caccgggugaaaauucgcaug................... 0
1691 seq_378145_x1 ........................................................................accgggugaaaauucgca..................... 0
1692 seq_377103_x3 ........................................................................accgggugaaaauucgcau.................... 0
1693 seq_378119_x1 ........................................................................accgggugaaaauucgcaCg................... 1
1694 seq_378255_x1 ........................................................................accggAugaaaauucgcaug................... 1
1695 seq_377693_x2 ........................................................................accgggugaaaauucUcaug................... 1
1696 seq_377743_x2 ........................................................................accCggugaaaauucgcaug................... 1
1697 seq_378045_x1 ........................................................................accgggugaaaaAucgcaug................... 1
1698 seq_377351_x2 ........................................................................accggguCaaaauucgcaug................... 1
1699 seq_377791_x1 ........................................................................accgggugaaaauucgcauC................... 1
1700 seq_378159_x1 ........................................................................acUgggugaaaauucgcaug................... 1
1701 seq_365235_x104 ........................................................................accgggugaaaauucgcaug................... 0
1702 seq_377765_x1 ........................................................................accgggugaaaauucCcaug................... 1
1703 seq_377365_x2 ........................................................................accgggugaaaauuAgcaug................... 1
1704 seq_378121_x1 ........................................................................accgggCgaaaauucgcaug................... 1
1705 seq_377641_x2 ........................................................................accgggugaaaauGcgcaug................... 1
1706 seq_378264_x1 ........................................................................accgAgugaaaauucgcaug................... 1
1707 seq_378094_x1 ........................................................................accgggAgaaaauucgcaug................... 1
1708 seq_377669_x2 ........................................................................accgggugaaaauucgcauU................... 1
1709 seq_376819_x4 ........................................................................accgggGgaaaauucgcaug................... 1
1710 seq_377755_x1 ..........................................................................cgggugaaaauucgcaug................... 0
1711
1712
1713
1714 >chrII:11534525-11540624_15
1715 score total 1978.6
1716 score for star read(s) 3.9
1717 score for read counts 1968.1
1718 score for mfe 2
1719 score for randfold 1.6
1720 score for cons. seed 3
1721 miRNA with same seed cbr-miR-35
1722 total read count 3872
1723 mature read count 3014
1724 loop read count 1
1725 star read count 857
1726 exp ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
1727 obs ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
1728 pri_seq auuauugaauuccugauauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucuggugucuccgaac
1729 pri_struct .........(((..((.(((((.((((((.(((((((((((.((((((.((((.((((....)))).)))).)))))))).))))))))).))))))))))).)).))). #MM
1730 seq_377766_x1 .............................cagcugauuucgucuugguaau........................................................... 0
1731 seq_377852_x1 .............................Aagcugauuucgucuugguaau........................................................... 1
1732 seq_376455_x6 .............................cagcugauuucgucuugguaaua.......................................................... 0
1733 seq_376102_x8 ..............................agcugauuucgucuuggua............................................................. 0
1734 seq_377932_x1 ..............................agcugCuuucgucuugguaa............................................................ 1
1735 seq_377781_x1 ..............................agcugauuucgucuugUuaa............................................................ 1
1736 seq_377876_x1 ..............................agcugUuuucgucuugguaa............................................................ 1
1737 seq_374292_x17 ..............................agcugauuucgucuugguaa............................................................ 0
1738 seq_377750_x1 ..............................agcugauuucgucuugguCa............................................................ 1
1739 seq_377792_x1 ..............................agAugauuucgucuugguaau........................................................... 1
1740 seq_377145_x3 ..............................Ugcugauuucgucuugguaau........................................................... 1
1741 seq_370030_x50 ..............................agcugauuucgucuugguaau........................................................... 0
1742 seq_378023_x1 ..............................agcugauuucgucuugguUau........................................................... 1
1743 seq_377863_x1 ..............................agcugauuAcgucuugguaau........................................................... 1
1744 seq_377940_x1 ..............................agcugauuucgucuugAuaau........................................................... 1
1745 seq_377894_x1 ..............................agcugauuucguAuugguaau........................................................... 1
1746 seq_377493_x2 ..............................aCcugauuucgucuugguaaua.......................................................... 1
1747 seq_377061_x3 ..............................agcugauuucgucuuggAaaua.......................................................... 1
1748 seq_377856_x1 ..............................agcugauuucgCcuugguaaua.......................................................... 1
1749 seq_378117_x1 ..............................agcugauuucgAcuugguaaua.......................................................... 1
1750 seq_376371_x6 ..............................agcugauuucgucuuUguaaua.......................................................... 1
1751 seq_377070_x3 ..............................agcugauuuAgucuugguaaua.......................................................... 1
1752 seq_375950_x8 ..............................agAugauuucgucuugguaaua.......................................................... 1
1753 seq_376148_x7 ..............................agcugUuuucgucuugguaaua.......................................................... 1
1754 seq_376533_x5 ..............................Ugcugauuucgucuugguaaua.......................................................... 1
1755 seq_377313_x3 ..............................agcugauuuUgucuugguaaua.......................................................... 1
1756 seq_378077_x1 ..............................agcugaCuucgucuugguaaua.......................................................... 1
1757 seq_378084_x1 ..............................aAcugauuucgucuugguaaua.......................................................... 1
1758 seq_377902_x1 ..............................agcugauuucguGuugguaaua.......................................................... 1
1759 seq_377151_x3 ..............................agcuAauuucgucuugguaaua.......................................................... 1
1760 seq_378275_x1 ..............................agcCgauuucgucuugguaaua.......................................................... 1
1761 seq_378290_x1 ..............................agcugauuucgucuugguaGua.......................................................... 1
1762 seq_377663_x2 ..............................agcugGuuucgucuugguaaua.......................................................... 1
1763 seq_377166_x3 ..............................agcugauuucgucuugguaUua.......................................................... 1
1764 seq_378017_x1 ..............................agcugCuuucgucuugguaaua.......................................................... 1
1765 seq_376979_x4 ..............................agUugauuucgucuugguaaua.......................................................... 1
1766 seq_376907_x4 ..............................agcugauuucgucuugguaauU.......................................................... 1
1767 seq_377363_x2 ..............................agcugaGuucgucuugguaaua.......................................................... 1
1768 seq_377031_x3 ..............................agcugauuucgucuugguaauC.......................................................... 1
1769 seq_377525_x2 ..............................agcugauuucguAuugguaaua.......................................................... 1
1770 seq_377085_x3 ..............................agcugauuucgGcuugguaaua.......................................................... 1
1771 seq_376739_x4 ..............................agcugauuucgucuuggCaaua.......................................................... 1
1772 seq_377274_x3 ..............................agcugauuucguUuugguaaua.......................................................... 1
1773 seq_377389_x2 ..............................agcugauuucgucuuCguaaua.......................................................... 1
1774 seq_376578_x5 ..............................agcugauuucgucuuggGaaua.......................................................... 1
1775 seq_377665_x2 ..............................agcugauuucgucuugguCaua.......................................................... 1
1776 seq_378137_x1 ..............................agcugauuucAucuugguaaua.......................................................... 1
1777 seq_337222_x632 ..............................agcugauuucgucuugguaaua.......................................................... 0
1778 seq_377205_x3 ..............................agcugauuucgucuugCuaaua.......................................................... 1
1779 seq_378202_x1 ..............................agcugauuucUucuugguaaua.......................................................... 1
1780 seq_375455_x10 ..............................agcugauuucgucuugUuaaua.......................................................... 1
1781 seq_373956_x19 ..............................agcugauuucgucuugguaauaU......................................................... 1
1782 seq_376317_x6 ..............................agcugauuucgucuugguaauaa......................................................... 0
1783 seq_377935_x1 ..............................agcugauuucguGuugguaauaa......................................................... 1
1784 seq_377919_x1 ..............................agcuAauuucgucuugguaauaa......................................................... 1
1785 seq_378228_x1 ..............................agcugauuucgucuugguaauaC......................................................... 1
1786 seq_378031_x1 ....................................................agcucgucauugagauua........................................ 0
1787 seq_377831_x1 ....................................................................uGucaccggguguaaaucagcu.................... 1
1788 seq_377319_x3 ....................................................................Aaucaccggguguaaaucagcuug.................. 1
1789 seq_377509_x2 .....................................................................Cucaccggguguaaaucagcuu................... 1
1790 seq_378082_x1 .....................................................................Cucaccggguguaaaucagcuug.................. 1
1791 seq_377100_x3 .....................................................................aucaccggguguaaaucagcuug.................. 0
1792 seq_376693_x5 ......................................................................ucaccggguguaaaucag...................... 0
1793 seq_377359_x2 ......................................................................ucaccgggGguaaaucagc..................... 1
1794 seq_375286_x11 ......................................................................ucaccggguguaaaucagc..................... 0
1795 seq_377929_x1 ......................................................................ucaccggguguaaauAagc..................... 1
1796 seq_378332_x1 ......................................................................ucaccggguguaaaucaUc..................... 1
1797 seq_378328_x1 ......................................................................ucaGcggguguaaaucagc..................... 1
1798 seq_377979_x1 ......................................................................ucaccggguguaNaucagc..................... 1
1799 seq_377361_x2 ......................................................................ucacAggguguaaaucagcu.................... 1
1800 seq_373312_x22 ......................................................................ucaccggguguaaaucagcu.................... 0
1801 seq_378183_x1 ......................................................................ucaccggguguaNaucagcu.................... 1
1802 seq_378120_x1 ......................................................................ucaccggguguaaaucagcG.................... 1
1803 seq_377981_x1 ......................................................................ucaccggguguaUaucagcu.................... 1
1804 seq_378256_x1 ......................................................................ucaccggguguaaaucaAcu.................... 1
1805 seq_377995_x1 ......................................................................Gcaccggguguaaaucagcuu................... 1
1806 seq_378260_x1 ......................................................................ucaccggguguaaauUagcuu................... 1
1807 seq_378301_x1 ......................................................................ucaccgggCguaaaucagcuu................... 1
1808 seq_378061_x1 ......................................................................uGaccggguguaaaucagcuu................... 1
1809 seq_377812_x1 ......................................................................ucaccggguguaaaAcagcuu................... 1
1810 seq_377776_x1 ......................................................................ucaccgCguguaaaucagcuu................... 1
1811 seq_377244_x3 ......................................................................ucaccggguguaaaucagcuA................... 1
1812 seq_366974_x88 ......................................................................ucaccggguguaaaucagcuu................... 0
1813 seq_377841_x1 ......................................................................ucaccgggugCaaaucagcuu................... 1
1814 seq_378297_x1 ......................................................................ucaccgggAguaaaucagcuu................... 1
1815 seq_377914_x1 ......................................................................ucaccggguguaaaucagcCu................... 1
1816 seq_376558_x5 ......................................................................ucaccggguguaCaucagcuu................... 1
1817 seq_377989_x1 ......................................................................ucaccggguguaaaCcagcuu................... 1
1818 seq_376743_x4 ......................................................................ucacAggguguaaaucagcuu................... 1
1819 seq_377778_x1 ......................................................................ucaccggguguaaaucGgcuu................... 1
1820 seq_377753_x1 ......................................................................ucaccggguguaaaucaUcuu................... 1
1821 seq_376648_x5 ......................................................................ucaccggguguaaaucGgcuug.................. 1
1822 seq_377707_x2 ......................................................................ucaccggguguaGaucagcuug.................. 1
1823 seq_377978_x1 ......................................................................ucaccCgguguaaaucagcuug.................. 1
1824 cel-miR-39 ......................................................................ucaccggguguaaaucagcuug.................. 0
1825 seq_378262_x1 ......................................................................ucaccggguguaUaucagcuug.................. 1
1826 seq_376628_x5 ......................................................................ucaccggguguaaaucagAuug.................. 1
1827 seq_377259_x3 ......................................................................ucaccggguguaaaucUgcuug.................. 1
1828 seq_377503_x2 ......................................................................ucaccggguAuaaaucagcuug.................. 1
1829 seq_374309_x17 ......................................................................ucaccgggCguaaaucagcuug.................. 1
1830 seq_377495_x2 ......................................................................ucaccggguguCaaucagcuug.................. 1
1831 seq_376118_x8 ......................................................................ucaccggguguaaaucaCcuug.................. 1
1832 seq_374326_x17 ......................................................................ucaccggguguaaauUagcuug.................. 1
1833 seq_376771_x4 ......................................................................ucaUcggguguaaaucagcuug.................. 1
1834 seq_376509_x6 ......................................................................ucaccggUuguaaaucagcuug.................. 1
1835 seq_377631_x2 ......................................................................ucCccggguguaaaucagcuug.................. 1
1836 seq_374642_x15 ......................................................................ucaccggguguaaauAagcuug.................. 1
1837 seq_377433_x2 ......................................................................uGaccggguguaaaucagcuug.................. 1
1838 seq_373880_x19 ......................................................................ucaccgggAguaaaucagcuug.................. 1
1839 seq_375942_x8 ......................................................................ucaccgCguguaaaucagcuug.................. 1
1840 seq_374855_x14 ......................................................................ucaccgggugGaaaucagcuug.................. 1
1841 seq_377094_x3 ......................................................................uNaccggguguaaaucagcuug.................. 1
1842 seq_373766_x19 ......................................................................ucaccgggugCaaaucagcuug.................. 1
1843 seq_378234_x1 ......................................................................ucaccggguUuaaaucagcuug.................. 1
1844 seq_376437_x6 ......................................................................ucaccggguguaaaucagcuGg.................. 1
1845 seq_376995_x4 ......................................................................ucaccgAguguaaaucagcuug.................. 1
1846 seq_377591_x2 ......................................................................ucaccggguCuaaaucagcuug.................. 1
1847 seq_377217_x3 ......................................................................ucaccgggugAaaaucagcuug.................. 1
1848 seq_377395_x2 ......................................................................ucaccggguguGaaucagcuug.................. 1
1849 seq_377545_x2 ......................................................................ucaccggguguaaaucNgcuug.................. 1
1850 seq_376899_x4 ......................................................................ucaccggguguaaaCcagcuug.................. 1
1851 seq_378172_x1 ......................................................................ucaccggNuguaaaucagcuug.................. 1
1852 seq_354255_x214 ......................................................................ucaccggguguaaaucagcuuU.................. 1
1853 seq_377808_x1 ......................................................................ucaccggguguaaaucagGuug.................. 1
1854 seq_376311_x6 ......................................................................ucaccggguguaCaucagcuug.................. 1
1855 seq_377741_x2 ......................................................................ucaccggguguaaaucagUuug.................. 1
1856 seq_375445_x10 ......................................................................ucaccggguguaNaucagcuug.................. 1
1857 seq_378186_x1 ......................................................................ucaNcggguguaaaucagcuug.................. 1
1858 seq_377920_x1 ......................................................................ucaccggguguaaaucagcuAg.................. 1
1859 seq_375918_x8 ......................................................................uUaccggguguaaaucagcuug.................. 1
1860 seq_375555_x10 ......................................................................ucaccggguguaaaucaUcuug.................. 1
1861 seq_377345_x2 ......................................................................ucaccggguguaaCucagcuug.................. 1
1862 seq_376548_x5 ......................................................................ucaccggguguaaaGcagcuug.................. 1
1863 seq_374597_x15 ......................................................................ucaccggguguaaaucagcuuC.................. 1
1864 seq_376891_x4 ......................................................................ucaccggguguaaaucagcGug.................. 1
1865 seq_311369_x2128......................................................................ucaccggguguaaaucagcuug.................. 0
1866 seq_378047_x1 ......................................................................ucaccggguguaaauGagcuug.................. 1
1867 seq_375757_x9 ......................................................................ucaccggguguaaaucCgcuug.................. 1
1868 seq_376377_x6 ......................................................................ucaccUgguguaaaucagcuug.................. 1
1869 seq_376779_x4 ......................................................................ucaccAgguguaaaucagcuug.................. 1
1870 seq_377199_x3 ......................................................................ucaccgUguguaaaucagcuug.................. 1
1871 seq_376022_x8 ......................................................................ucaAcggguguaaaucagcuug.................. 1
1872 seq_372142_x31 ......................................................................ucacAggguguaaaucagcuug.................. 1
1873 seq_378127_x1 ......................................................................ucaccggguguaaaucagcCug.................. 1
1874 seq_377375_x2 ......................................................................ucaccggguguaaaucaAcuug.................. 1
1875 seq_377727_x2 ......................................................................ucaccggCuguaaaucagcuug.................. 1
1876 seq_378248_x1 ......................................................................uAaccggguguaaaucagcuug.................. 1
1877 seq_377573_x2 ......................................................................ucaGcggguguaaaucagcuug.................. 1
1878 seq_378181_x1 ......................................................................Acaccggguguaaaucagcuug.................. 1
1879 seq_376815_x4 ......................................................................ucaccggguguaaUucagcuug.................. 1
1880 seq_377238_x3 ......................................................................ucacUggguguaaaucagcuug.................. 1
1881 seq_375847_x9 ......................................................................Gcaccggguguaaaucagcuug.................. 1
1882 seq_377483_x2 ......................................................................ucaccggguguaaGucagcuug.................. 1
1883 seq_377697_x2 ......................................................................ucaccggAuguaaaucagcuug.................. 1
1884 seq_377880_x1 ......................................................................ucaccggguguUaaucagcuug.................. 1
1885 seq_372658_x27 ......................................................................ucaccgggGguaaaucagcuug.................. 1
1886 seq_371821_x33 ......................................................................ucaccggguguaaaucagcuuA.................. 1
1887 seq_377399_x2 ......................................................................ucaccggguguaaaucagcAug.................. 1
1888 seq_376991_x4 ......................................................................ucaccggguguaaaucagcuugC................. 1
1889 seq_376683_x5 ......................................................................ucaccggguguaaaucagcuugg................. 0
1890 seq_375196_x12 ......................................................................ucaccggguguaaaucagcuugA................. 1
1891 seq_372080_x31 ......................................................................ucaccggguguaaaucagcuugU................. 1
1892 seq_377849_x1 ......................................................................ucaccggguguaaaucagcuuggc................ 0
1893 seq_377884_x1 ......................................................................ucaccggguguaaaucagcuuggcG............... 1
1894 seq_377597_x2 .......................................................................caccggguguaaaucagcuug.................. 0
1895 seq_377825_x1 .......................................................................caccggguguaaaucagcuuU.................. 1
1896 seq_377621_x2 ........................................................................accggguguaaaucagcuuU.................. 1
1897 seq_378024_x1 ........................................................................aAcggguguaaaucagcuug.................. 1
1898 seq_377846_x1 ........................................................................accgggGguaaaucagcuug.................. 1
1899 seq_378292_x1 ........................................................................accgggCguaaaucagcuug.................. 1
1900 seq_377705_x2 ........................................................................accggguguaaaucagcuuA.................. 1
1901 seq_377873_x1 ........................................................................accggguguaaaucUgcuug.................. 1
1902 seq_371887_x33 ........................................................................accggguguaaaucagcuug.................. 0
1903 seq_378179_x1 ........................................................................accggguguaaaucagcuNg.................. 1
1904 seq_378219_x1 ........................................................................accggguguaaaucagcuugUc................ 1
1905 seq_377870_x1 .........................................................................ccggguguaaaucagcuuA.................. 1
1906
1907
1908
1909 >chrII:11534525-11540624_13
1910 score total 5.5
1911 score for star read(s) -1.3
1912 score for read counts 0
1913 score for mfe 2.2
1914 score for randfold 1.6
1915 score for cons. seed 3
1916 miRNA with same seed cbr-miR-35
1917 total read count 2140
1918 mature read count 2132
1919 loop read count 8
1920 star read count 0
1921 exp fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
1922 pri_seq ucgugguuucucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucauucc
1923 pri_struct .............((((((((((((((((((((((((((..(.((((((((..((........))...)))))))).)..)))))))))))))))))))).).)))))... #MM
1924 seq_378012_x1 .........cucugugaUccagguccugu.................................................................................. 1
1925 seq_376030_x8 ...................................................acgcauccaaaagucucua......................................... 0
1926 seq_377775_x1 .....................................................................aucaccgggagaaaaacuggag.................... 0
1927 seq_378130_x1 .....................................................................aucaccgggagUaaaacuggagu................... 1
1928 seq_375088_x12 .....................................................................aucaccgggagaaaaacuggagu................... 0
1929 seq_378001_x1 .....................................................................aucaccggCagaaaaacuggagu................... 1
1930 seq_376947_x4 .....................................................................Cucaccgggagaaaaacuggagu................... 1
1931 seq_378196_x1 .....................................................................aucaccgggagaaCaacuggagu................... 1
1932 seq_377529_x2 .....................................................................aucaccgggagaaaaacuggaguU.................. 1
1933 seq_377895_x1 .....................................................................aucaccgggagaaaaacuggaguaA................. 1
1934 seq_377879_x1 ......................................................................ucaccgggUgaaaaacug....................... 1
1935 seq_377877_x1 ......................................................................ucaccgggagaaaaacug....................... 0
1936 seq_376747_x4 ......................................................................ucaccgggagaaaaacugga..................... 0
1937 seq_377819_x1 ......................................................................ucaccgggagaaaaacuggaU.................... 1
1938 seq_377523_x2 ......................................................................ucaccggCagaaaaacuggag.................... 1
1939 seq_377211_x3 ......................................................................ucaccgggagGaaaacuggag.................... 1
1940 seq_378171_x1 ......................................................................ucaccgggagaaUaacuggag.................... 1
1941 seq_377815_x1 ......................................................................ucaccgggagaaaUacuggag.................... 1
1942 seq_377425_x2 ......................................................................ucacAgggagaaaaacuggag.................... 1
1943 seq_378277_x1 ......................................................................ucaccgggagaaaaaUuggag.................... 1
1944 seq_378014_x1 ......................................................................ucaccgggagaaaaaGuggag.................... 1
1945 seq_376859_x4 ......................................................................ucaccgggagaaaaacuggUg.................... 1
1946 seq_377517_x2 ......................................................................ucaccgggagCaaaacuggag.................... 1
1947 seq_378305_x1 ......................................................................ucaAcgggagaaaaacuggag.................... 1
1948 seq_377924_x1 ......................................................................ucaccgggagUaaaacuggag.................... 1
1949 seq_377603_x2 ......................................................................ucaccgggagaaaaacuggaC.................... 1
1950 seq_378208_x1 ......................................................................ucaccgggagaaaaacAggag.................... 1
1951 seq_377178_x3 ......................................................................ucaccgggagaaaaacugCag.................... 1
1952 seq_377886_x1 ......................................................................ucaccgggagaaCaacuggag.................... 1
1953 seq_361587_x144 ......................................................................ucaccgggagaaaaacuggag.................... 0
1954 seq_377571_x2 ......................................................................ucaccgggUgaaaaacuggag.................... 1
1955 seq_376054_x8 ......................................................................ucaccgggagGaaaacuggagu................... 1
1956 seq_377868_x1 ......................................................................ucaAcgggagaaaaacuggagu................... 1
1957 seq_377229_x3 ......................................................................ucaccggAagaaaaacuggagu................... 1
1958 seq_377551_x2 ......................................................................ucaccgggagaaNaacuggagu................... 1
1959 seq_377429_x2 ......................................................................ucaccggCagaaaaacuggagu................... 1
1960 seq_376678_x5 ......................................................................ucaccgggagaaaaacuCgagu................... 1
1961 seq_377798_x1 ......................................................................ucaccgggagaaaaaNuggagu................... 1
1962 seq_374083_x18 ......................................................................ucaccgggagaaaaacuggUgu................... 1
1963 seq_375485_x10 ......................................................................ucaccgggagCaaaacuggagu................... 1
1964 seq_377874_x1 ......................................................................ucaccgggaAaaaaacuggagu................... 1
1965 seq_376673_x5 ......................................................................uAaccgggagaaaaacuggagu................... 1
1966 seq_377465_x2 ......................................................................ucaccgggagaaaaacAggagu................... 1
1967 seq_376863_x4 ......................................................................ucaccgggagaaaaacugUagu................... 1
1968 seq_377214_x3 ......................................................................uNaccgggagaaaaacuggagu................... 1
1969 seq_377391_x2 ......................................................................ucaccgggagaaaaacuggCgu................... 1
1970 seq_320610_x1349......................................................................ucaccgggagaaaaacuggagu................... 0
1971 seq_378162_x1 ......................................................................ucaccgggGgaaaaacuggagu................... 1
1972 seq_377945_x1 ......................................................................ucaccgggagaCaaacuggagu................... 1
1973 seq_378308_x1 ......................................................................ucaUcgggagaaaaacuggagu................... 1
1974 seq_377725_x2 ......................................................................Ccaccgggagaaaaacuggagu................... 1
1975 seq_378032_x1 ......................................................................ucaccgggagaaaUacuggagu................... 1
1976 seq_376211_x7 ......................................................................ucaccgggUgaaaaacuggagu................... 1
1977 seq_377906_x1 ......................................................................ucaccgggagaaaaacuggaUu................... 1
1978 seq_378174_x1 ......................................................................ucaccgggagaaaaacuggGgu................... 1
1979 seq_377339_x2 ......................................................................ucaccgggCgaaaaacuggagu................... 1
1980 seq_374190_x17 ......................................................................ucaccgggagaaaaacuggagA................... 1
1981 seq_376999_x4 ......................................................................ucaGcgggagaaaaacuggagu................... 1
1982 seq_371854_x33 ......................................................................ucaccgggagaaaaacuggagC................... 1
1983 seq_377739_x2 ......................................................................ucaccgggagaGaaacuggagu................... 1
1984 seq_376963_x4 ......................................................................ucaccUggagaaaaacuggagu................... 1
1985 seq_377960_x1 ......................................................................ucaccgggagaaaCacuggagu................... 1
1986 seq_376718_x5 ......................................................................ucaccgggagaaaaacuggaCu................... 1
1987 seq_378215_x1 ......................................................................ucaccgggagaaaaacugNagu................... 1
1988 seq_377196_x3 ......................................................................ucacUgggagaaaaacuggagu................... 1
1989 seq_378253_x1 ......................................................................ucaccgggagaaaaaGuggagu................... 1
1990 seq_377481_x2 ......................................................................ucaccgggagaaaaCcuggagu................... 1
1991 seq_377655_x2 ......................................................................ucaccgggagaaaaacNggagu................... 1
1992 seq_377842_x1 ......................................................................ucaccgggagaaGaacuggagu................... 1
1993 seq_377733_x2 ......................................................................ucaccgggagaaCaacuggagu................... 1
1994 seq_376975_x4 ......................................................................ucaccgggagaaaaacuAgagu................... 1
1995 seq_375739_x9 ......................................................................ucaccgggagaaaaaAuggagu................... 1
1996 seq_378059_x1 ......................................................................ucaccgggagaUaaacuggagu................... 1
1997 seq_376875_x4 ......................................................................ucaccgggagaaaaacuUgagu................... 1
1998 seq_377567_x2 ......................................................................ucCccgggagaaaaacuggagu................... 1
1999 seq_377208_x3 ......................................................................ucaccgggagaaaaacugAagu................... 1
2000 seq_378085_x1 ......................................................................ucaccCggagaaaaacuggagu................... 1
2001 seq_377379_x2 ......................................................................ucaccgggagaaaGacuggagu................... 1
2002 seq_378242_x1 ......................................................................ucaccgggaUaaaaacuggagu................... 1
2003 seq_378086_x1 ......................................................................ucaccAggagaaaaacuggagu................... 1
2004 seq_378041_x1 ......................................................................ucaccgggagaaaaUcuggagu................... 1
2005 seq_377901_x1 ......................................................................uGaccgggagaaaaacuggagu................... 1
2006 seq_377719_x2 ......................................................................Gcaccgggagaaaaacuggagu................... 1
2007 seq_378268_x1 ......................................................................ucaccgggaCaaaaacuggagu................... 1
2008 seq_377453_x2 ......................................................................ucaccgAgagaaaaacuggagu................... 1
2009 seq_373334_x22 ......................................................................ucaccgggagaaaaacugCagu................... 1
2010 seq_375160_x12 ......................................................................ucaccgggagaaaaaUuggagu................... 1
2011 seq_373422_x21 ......................................................................ucacAgggagaaaaacuggagu................... 1
2012 seq_375112_x12 ......................................................................ucaccgggagaaaaacuggagG................... 1
2013 cel-miR-38 ......................................................................ucaccgggagaaaaacuggagu................... 0
2014 seq_376038_x8 ......................................................................ucaccgggagUaaaacuggagu................... 1
2015 seq_377701_x2 ......................................................................uUaccgggagaaaaacuggagu................... 1
2016 seq_376293_x6 ......................................................................ucaccgggagaaaaacGggagu................... 1
2017 seq_377106_x3 ......................................................................ucaccgCgagaaaaacuggagu................... 1
2018 seq_377695_x2 ......................................................................ucaccgggagaaaaacuggUgua.................. 1
2019 seq_377892_x1 ......................................................................ucaccgggagCaaaacuggagua.................. 1
2020 seq_378063_x1 ......................................................................ucaccgggagaaaaacuggagAa.................. 1
2021 seq_377013_x3 ......................................................................ucaccgggagaaaaacuggagCa.................. 1
2022 seq_378122_x1 ......................................................................uGaccgggagaaaaacuggagua.................. 1
2023 seq_378075_x1 ......................................................................ucaccgggagaaaaacuggaguG.................. 1
2024 seq_352252_x230 ......................................................................ucaccgggagaaaaacuggaguU.................. 1
2025 seq_373708_x20 ......................................................................ucaccgggagaaaaacuggagua.................. 0
2026 seq_374947_x13 ......................................................................ucaccgggagaaaaacuggaguaA................. 1
2027 seq_378157_x1 ......................................................................ucaccgggagaaaaacuggaguUg................. 1
2028 seq_377403_x2 .......................................................................caccgggagaaaaacuggagu................... 0
2029 seq_377136_x3 ........................................................................accgggagaaaaacuggag.................... 0
2030 seq_378022_x1 ........................................................................accgggagaaaaacuggagC................... 1
2031 seq_375395_x10 ........................................................................accgggagaaaaacuggagu................... 0
2032 seq_378209_x1 ........................................................................accgggagaaaaacuggagA................... 1
2033 seq_378318_x1 ........................................................................accgggagaaaaacugAagu................... 1
2034 seq_378282_x1 ........................................................................accgggagGaaaacuggagu................... 1
2035 seq_377867_x1 ........................................................................accgggagCaaaacuggagu................... 1
2036 seq_377972_x1 ........................................................................accgggagaaaaacGggagu................... 1
2037 seq_377673_x2 ........................................................................accgggagaaaaacuggaguU.................. 1
2038 seq_377872_x1 ..........................................................................cgggagaaaaacuggagu................... 0
2039 seq_378055_x1 ..........................................................................cgggagaaaaacuggaguU.................. 1
2040
2041
2042
2043 >chrII:11534525-11540624_19
2044 score total 84.4
2045 score for star read(s) 3.9
2046 score for read counts 77.6
2047 score for mfe 1.9
2048 score for randfold 1.6
2049 score for cons. seed -0.6
2050 total read count 164
2051 mature read count 68
2052 loop read count 9
2053 star read count 87
2054 exp ffffffffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSffffffffffffffffffff
2055 obs ffffffffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSffffffffffffffffffff
2056 pri_seq auuuuuaagugggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccugcucu
2057 pri_struct .......((..((..(((..(((((.(((((((((((((((..(((((((.................))))))))))).))))))))))).))))))))..))..))..... #MM
2058 seq_378151_x1 ..........................ggugguuuuucucuUcaguga................................................................. 1
2059 seq_377657_x2 ..........................ggugguuuuucucugcagugau................................................................ 0
2060 seq_378283_x1 ..........................ggGgguuuuucucugcagugaua............................................................... 1
2061 seq_377938_x1 ..........................ggugguuuuucucugUagugaua............................................................... 1
2062 seq_378266_x1 ..........................ggugguCuuucucugcagugaua............................................................... 1
2063 seq_376959_x4 ..........................ggugguuuuucucuUcagugaua............................................................... 1
2064 seq_377459_x2 ..........................ggugguuuuucucugcagugCua............................................................... 1
2065 seq_377463_x2 ..........................ggugguuuuuUucugcagugaua............................................................... 1
2066 seq_370580_x42 ..........................ggugguuuuucucugcagugaua............................................................... 0
2067 seq_378066_x1 ..........................ggugguuuuucucugcagCgaua............................................................... 1
2068 seq_378054_x1 ..........................ggugguuuuucucugcagugauU............................................................... 1
2069 seq_377637_x2 ..........................ggugguuuuucucugcCgugaua............................................................... 1
2070 seq_378131_x1 ..........................ggugguuuuucucugcagugauaU.............................................................. 1
2071 seq_378064_x1 ..........................ggugguuuuucucugcagugauag.............................................................. 0
2072 seq_378010_x1 ..........................ggugguuuuucuGugcagugauag.............................................................. 1
2073 seq_377371_x2 ..........................ggugguuuuucucugcagugauaAa............................................................. 1
2074 seq_377953_x1 ............................ugguuuuucucugcagugaua............................................................... 0
2075 seq_377801_x1 ............................ugguuuuucucugcagugUua............................................................... 1
2076 seq_377854_x1 ............................ugguuuuucucugcagugauaga............................................................. 0
2077 seq_375838_x9 .................................................gauacuucuaacaacucgcua.......................................... 0
2078 seq_377941_x1 ....................................................................uaucaccgggugaaaaaucaccu..................... 0
2079 seq_378320_x1 .....................................................................aucaccgggugaaaaaucacAu..................... 1
2080 seq_378280_x1 .....................................................................aucaccggguAaaaaaucaccu..................... 1
2081 seq_376006_x8 .....................................................................aucaccgggugaaaaaucaccu..................... 0
2082 seq_376879_x4 .....................................................................aucaccgggugaaaaaucaccuU.................... 1
2083 seq_375615_x10 .....................................................................aucaccgggugaaaaaucaccua.................... 0
2084 seq_378108_x1 .....................................................................aucaccgggGgaaaaaucaccua.................... 1
2085 seq_376851_x4 ......................................................................ucaccgggugaaaaaucaccu..................... 0
2086 seq_377803_x1 ......................................................................ucaccgggugaaCaaucaccua.................... 1
2087 seq_378243_x1 ......................................................................ucaccgggugaaaGaucaccua.................... 1
2088 seq_378091_x1 ......................................................................ucaccgAgugaaaaaucaccua.................... 1
2089 seq_377871_x1 ......................................................................ucaccgggugaaaaauAaccua.................... 1
2090 seq_377853_x1 ......................................................................uAaccgggugaaaaaucaccua.................... 1
2091 seq_378138_x1 ......................................................................ucaccgggugCaaaaucaccua.................... 1
2092 seq_378123_x1 ......................................................................uUaccgggugaaaaaucaccua.................... 1
2093 seq_377052_x3 ......................................................................ucaccgggGgaaaaaucaccua.................... 1
2094 cel-miR-41 ......................................................................ucaccgggugaaaaaucaccua.................... 0
2095 seq_378249_x1 ......................................................................ucaccgggugaaaaaucaUcua.................... 1
2096 seq_372631_x27 ......................................................................ucaccgggugaaaaaucaccua.................... 0
2097 seq_377820_x1 ......................................................................ucaccAggugaaaaaucaccua.................... 1
2098 seq_377247_x3 ......................................................................ucaccgggugaaaaaucaccuaU................... 1
2099 seq_377331_x2 ......................................................................ucaccgggugaaaaaucaccuaA................... 1
2100 seq_377731_x2 .......................................................................caccgggugaaaaaucaccua.................... 0
2101 seq_377439_x2 .......................................................................caccgggugaaaaaucaccuaU................... 1
2102 seq_377980_x1 ........................................................................accgggCgaaaaaucaccua.................... 1
2103 seq_376395_x6 ........................................................................accgggugaaaaaucaccua.................... 0
2104 seq_378083_x1 .........................................................................ccgggugaaaaaucaccua.................... 0
2105 seq_377991_x1 ..........................................................................cgggugaaaaaucaccua.................... 0
2106
2107
2108