# HG changeset patch
# User rnateam
# Date 1422367584 18000
# Node ID eaac585f172ae006c9a88a5169daf079ce055dd0

Imported from capsule None

diff -r 000000000000 -r eaac585f172a mirdeep2.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mirdeep2.xml	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,196 @@
+<tool id="rbc_mirdeep2" name="MiRDeep2" version="2.0.0">
+    <description>
+<![CDATA[
+identification of novel and known miRNAs
+]]>
+    </description>
+    <requirements>
+        <requirement type="package" version="2.0">mirdeep2</requirement>
+        <requirement type="package" version="2.0">mirdeep2_quantifier</requirement>
+        <requirement type="package" version="0.12.7">bowtie</requirement>
+        <requirement type="package" version="5.18.1">perl</requirement>
+        <requirement type="package" version="1.8.5">vienna_rna</requirement>
+        <requirement type="package" version="2.023">pdf_api2</requirement>
+        <requirement type="package" version="2.0">randfold</requirement>
+    </requirements>
+
+    <command>
+<![CDATA[
+    miRDeep2.pl
+    
+    $reads
+    $genome
+    $mappings
+    
+    #if $mature_this
+        $mature_this
+    #else
+        none
+    #end if
+    
+    #if $mature_other
+        $mature_other
+    #else
+        none
+    #end if
+    
+    #if $precursors
+        $precursors
+    #else
+        none
+    #end if
+    
+    #if $species.value != 'all'
+        -t $species
+    #end if
+    
+    #if $star_sequences
+        -s $star_sequences
+    #end if
+    
+    #if $min_read_stack
+        -a $min_read_stack
+    #end if
+    
+    #if $min_read_stack
+        -a $min_read_stack
+    #end if
+    
+    -g $max_precursors_analyze
+    -b $min_score_cutoff
+    $disable_randfold
+    
+    ; cp result*.bed result.bed 2> /dev/null
+    ; cp result*.csv result.csv 2> /dev/null
+    ; cp mirdeep_runs/run*/output.mrd . 2> /dev/null
+    ; cp mirdeep_runs/run*/survey.csv . 2> /dev/null
+    
+    ## html output
+    ;
+    cp result*.html $html 2> /dev/null
+    
+    ## move pdf directory to be accessible from the new index.html
+    ;
+    mkdir -p $html.files_path 2> /dev/null
+    ;
+    cp -R pdfs* $html.files_path 2> /dev/null
+    
+]]>
+    </command>
+    <stdio>
+        <!-- Anything other than zero is an error -->
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+        <!-- In case the return code has not been set propery check stderr too -->
+        <regex match="Error:" />
+        <regex match="Exception:" />
+    </stdio>
+    <inputs> 
+        <param name="reads" format="fasta" type="data" label="Collapsed deep sequencing reads">
+            <help>
+<![CDATA[
+Reads in fasta format. The identifier should contain a prefix, a running
+number and a '_x' to indicate the number of reads that have this sequence.
+There should be no redundancy in the sequences.
+]]>
+            </help>
+        </param>
+        <param name="genome" format="fasta" type="data" label="Genome" help="Genome contigs in fasta format. The identifiers should be unique."/>
+        <param name="mappings" format="tabular" type="data" label="Mappings" help="Reads mapped against genome. Mappings should be in ARF format."/>
+        <param name="mature_this" optional="true" format="fasta" type="data" label="Mature miRNA sequences for this species" 
+            help="miRBase miRNA sequences in fasta format. These should be the known mature sequences for the species being analyzed."/>
+        <param name="mature_other" optional="true" format="fasta" type="data" label="Mature miRNA sequences for related species">
+            <help>
+<![CDATA[
+miRBase miRNA sequences in fasta format. These should be the pooled known
+mature sequences for 1-5 species closely related to the species being analyzed.
+]]>
+            </help>
+        </param>
+        <param name="precursors" optional="true" format="fasta" type="data" label="Precursor sequences" 
+            help="miRBase miRNA precursor sequences in fasta format. These should be the known precursor sequences for the species being analyzed."/>
+            
+        <param name="species" type="select" label="Search in species" help="If not searching in a specific species all species in your files will be analyzed. (-t)">
+            <option value="all">All species</option>
+            <option value="tni">tetraodon</option>
+            <option value="dps">d.pseudoobscura</option>
+            <option value="dya">d.yakuba</option>
+            <option value="ame">a.mellifera</option>
+            <option value="dmo">d.mojavensis</option>
+            <option value="cel">worm</option>
+            <option value="aga">a.gambiae</option>
+            <option value="cbr">c.briggsae</option>
+            <option value="cin">c.intestinalis</option>
+            <option value="mmu">mouse</option>
+            <option value="xtr">x.tropicalis</option>
+            <option value="eca">horse</option>
+            <option value="cfa">dog</option>
+            <option value="fru">fugu</option>
+            <option value="bta">cow</option>
+            <option value="der">d.erecta</option>
+            <option value="dgr">d.grimshawi</option>
+            <option value="gga">chicken</option>
+            <option value="spu">s.purpuratus</option>
+            <option value="bfl">lancelet</option>
+            <option value="ptr">chimp</option>
+            <option value="dse">d.sechellia</option>
+            <option value="dpe">d.persimilis</option>
+            <option value="dvi">d.virilis</option>
+            <option value="rno">rat</option>
+            <option value="dme">d.melanogaster</option>
+            <option value="lca">cat</option>
+            <option value="sja">c.japonica</option>
+            <option value="dan">d.ananassae</option>
+            <option value="hsa">human</option>
+            <option value="dsi">d.simulans</option>
+        </param>
+        <param name="star_sequences" format="fasta" type="data" optional="true" label="Star sequences" help="From miRBase in fasta format (optional) (-s)"/>
+        
+        <param name="min_read_stack" optional="true" type="integer" minvalue="0" label="Minimum read stack height">
+            <help>
+<![CDATA[
+minimum read stack height that triggers analysis. Using this option disables
+automatic estimation of the optimal value and all detected precursors are analyzed. (-a)
+]]>
+            </help>
+        </param>
+        <param name="max_precursors_analyze" type="integer" value="50000" label="Maximum precursors" 
+            help="Maximum number of precursors to analyze when automatic excision gearing is used. If set to -1 all precursors will be analyzed. (-g)."/>
+        <param name="min_score_cutoff" type="integer" value="0" label="Minimum miRNA score" 
+            help="Minimum score cut-off for predicted novel miRNAs to be displayed in the overview table. (-b)"/>
+        <param name="disable_randfold" type="boolean" truevalue="-c" falsevalue="" label="Disable randfold analysis" help="(-c)"/>
+    </inputs>
+    <outputs>
+        <data name="tab_results" format="tabular" from_work_dir="result.csv" label="Tabular output of ${tool.name} on ${on_string}"/>
+        <data format="html" name="html" label="${tool.name} on ${on_string} (html report)"/>
+        <data name="pred_acc" format="tabular" from_work_dir="survey.csv" label="Prediction accuracy output of ${tool.name} on ${on_string}"/>
+        <data name="bed_out" format="bed" from_work_dir="result.bed" label="Bed output of ${tool.name} on ${on_string}"/>
+        <data name="mrd_out" format="txt" from_work_dir="output.mrd" label="Text output of ${tool.name} on ${on_string}"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="reads" value="reads_collapsed.fa"/>
+            <param name="genome" value="cel_cluster.fa"/>
+            <param name="mappings" value="reads_collapsed_vs_genome.arf"/>
+            <param name="mature_this" value="mature_ref_this_species.fa"/>
+            <param name="mature_other" value="mature_ref_other_species.fa"/>
+            <param name="precursors" value="precursors_ref_this_species.fa"/>
+            
+            <output name="tab_results" file="result.csv" compare="sim_size"/>
+            <output name="prec_acc" file="survey.csv" compare="sim_size"/>
+            <output name="bed_out" file="result.bed" compare="sim_size"/>
+            <output name="mrd_out" file="output.mrd" compare="sim_size"/>
+        </test>
+    </tests>
+    <help>
+<![CDATA[
+**What MiRDeep2 does**
+
+MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data. Furthermore, it can be used for miRNA expression profiling across samples.
+]]>
+    </help>
+    <citations>
+        <citation type="doi">10.1093/nar/gkr688</citation>
+        <citation type="doi">10.1002/0471250953.bi1210s36</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r eaac585f172a test-data/cel_cluster.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cel_cluster.fa	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,132 @@
+>chrII:11534525-11540624
+tccaaaatattagaggccccacgaaaaggggagcagaacgaaaaggggat
+ctgcaaaaaggggatctgcgaaaaggggagatacgaaaaggggagatacg
+aaaaggggagcaacgaaaaggggatctggcactgtgccaaacgctatttt
+tctcaaagaaaacaatacaacgatgctccgatgttacgcgtcgcgtgttg
+ttaagcgtatcttctagaagaaaatttcaaaaatcaacgtgcgttgcgtg
+agaaaaattgcgttttgtgcgtttggcacagtgccagctccccttttcgt
+tgctccccttttcgtatctccccttttcgtatctccccttttcgcagatc
+ccctttttgcagatccccttttcgttctgctcccctcgtggggcctcaaa
+taatattgtcaatggagcgcagttgcgcacaccgaaatacgcacgaaatt
+tgaaattggcaggcctagaaagtctggatttaaaatatttatgcatatta
+acctgagtttcggcatgtttagataaatttagattaaaatttattaaata
+aaaatatttaaaatttattaaattcaacattatctttaattttacagaaa
+taaaaaccaaaaaaccaacgaagtgtaacttttcgacaataaatatttat
+aaattattcaattaattggaaatctatttatcacatctcatcgtgaacaa
+gcacatggctaaacaatgcctcgactttatccacccatcctggatttttc
+ctgttgaaaatcttcaaatccttcatagtctgctcaattgccttaacagc
+cttttcccttttcacatccttcgtcaattcctcaaccatcgcctctacaa
+gttgtgatcgtgaggccccttcaacgaatttcttgtccaatacatctctg
+agctgaaaaataagtccctttattcatgtgcaccacctgccactcattca
+ttttagatcctaatcctgtatttctctctctctctcactaatcgtcccgt
+catatctgacccactataatgaggggaccaccactttgccccagatttcg
+taatgagccaacatacactaggccctgttctagcacccccattgtgcatg
+ggagacacatcgtctgttggttcgggtcagctgagatgacgtggcagatg
+acgtcatgtttgttctctagcagatccctatcgtaaaataccgttctttg
+ttcgtttatgagcacttcttgggaaacaagaagaatattagagaatattg
+gattttaggaaatttcttgaccctaataatatgtatctcatggggctaat
+tacgaaagatttagagctcactaaagcagatgtggataagctggaactat
+agtcaattctcacgagatattattattagcttactcgttgaatttgatgc
+cgtgttaggtagaagccgagaacacgatgaaccttggaagttatgtagtc
+gagttttctggaagaaaaagtatatatagtttgataaaaagttacgtcat
+aagttattggtcccgagtgtgtacactagaaacttgcgcaatcagttggt
+caggtggtctaggacctttacatgtaatataattcattggtttgttgctc
+tagatctcaaagaatatggttttcctgctgagaaacaaaatttttttttc
+aaatgttcgcgatattatacgatttttttgcgctgaaaaatacggtatcc
+ggactcgacacgacagtttttcaataaattcggaaaggtacatatgcgcc
+tttgaagagtactgtaattttaaacatttgttgatgcagtaaatattctc
+acggatttttagaggtttttttttgaatatttatacagttatattagagt
+taaaaaaataaatctatttttatcgaaatttatgaaaaatctactcccca
+gaaacaaagtttgaatttacttaaaatgtatgtgcgcctttttaaattca
+acaaaaatttatcaaattttgtctttttaatcacttttacttttttttcg
+aaaaaaaaaaaaactttaaaaacaccgaaaattaaaatttttaattaccg
+taatcctttaaaggcgcacacctctttttcgcaatcataaaaatttacag
+gcacagaatttcctactgtaacgtgttttctcgatagaaacgtttctcca
+aatcgaaatttttattagcaatcatcaattcgtcatgtttctgtgctgga
+gcacattgttatgcagtgctcatgaatattcacagttgaaaatcgaattt
+ttttttcttatttttattaacttctctcctcactcaagtgcaatctcatt
+tcggcggaacgatgaaagcggactcgtttgaaacggattacactgctggc
+tggctccatcttttttatttctggtttttttcccgacacgggaggtcatc
+cgtccacgtcttcaatcttattcgcttctccttctatctatctctcttcc
+aaaaaaatggaacagattgtccgccttctactttccgcatgcgcctattc
+tagacatcgagaagaagcgagagaatccgaaaaactccgccgtccggcgc
+ctagcgttcatcccgtcgcatccaatttccttcacccctgtctccagtct
+ctaatctgtgtttcccagaccttctccttcttcttctcccctctttcttc
+cctttcttttctacgattcctagacctgcccggttgaccatcgggcccac
+catttatcgagcgcgtccgtctgttcgttgctgtgagcgcgcgcgcgcga
+gcgcacactgcacaccatttgaccgcaacgagccgagagagtgtgtgaaa
+tgaagagacgccgagtggacacgttgctctacaccaaacgcgctacacca
+aatgggcggagacccaatggtgcaccaagtcagcagtataaaaggaatgg
+aaatggtccattcagtcatcagttgtttttttattttctcttttctccca
+tcactttctcccttcttcccctctcctaatttccattcccaactattatt
+ctcggatcagatcgagccattgctggtttcttccacagtggtactttcca
+ttagaactatcaccgggtggaaactagcagtggctcgatcttttccactt
+gctccaccgctgtcggggaaccgcgccaattttcgcttcagtgctagacc
+atccaaagtgtctatcaccgggtgaaaattcgcatgggtccccgacgcgg
+aaagataaaatatcttaaaatcgattctagaaacccttggaccagtgtgg
+gtgtccgttgcggtgctacattctctaatctgtatcaccgggtgaacact
+tgcagtggtcctcgtggtttctctgtgagccaggtcctgttccggttttt
+tccgtggtgataacgcatccaaaagtctctatcaccgggagaaaaactgg
+agtaggacctgtgactcattccgatttctggagttttcccctacattcta
+ccattcagctactgattattgaattcctgatataccgagagcccagctga
+tttcgtcttggtaataagctcgtcattgagattatcaccgggtgtaaatc
+agcttggctctggtgtctccgaacctcctgtccgcacctcagtggatgta
+tgccatgatgataagatatcagaaatcctatcaccgggtgtacatcagct
+aaggtgcgggtacaggtgcatttgatatcaaggtgagttatttttaagtg
+ggtcccagagaccttggtggtttttctctgcagtgatagatacttctaac
+aactcgctatcaccgggtgaaaaatcacctaggtctggagcctcctgctc
+tttttttgctgtttttaaacttaaacttaaaactaacactttatcaaaat
+aaagtcttccaaaatcttttttctgatctgccggaagactttccatgaat
+ttgtccaaaactcgttgcactttatcctcgtcgtaatcatttgacaccat
+atctttggataactagaataattgaacattggtttaaaaaaattctctca
+aaaaaaaaatcacaaacctgatgaattttagcctcatctatagcagtatc
+tgcgagaagaatcgtaagattcattgataattctatatattttccaataa
+ttttatccgaagctggatgtgaagtttctacagtacctccgtggcataat
+actacaatggaagcaaaaagagcgacaattaggatcgtcattttagtgga
+gaatgatgaattgacccggctctttgggggttggaggattcattttcccc
+ttcaacaggtgctcaaataattaaagagaatagaaccgacgatatatggg
+tcaaatgtttatacagttgtgctactaaacgtattgttacacgcgttatt
+aataattagaattagaattatatcgttttgtacggattgagaatcccatt
+tgggtcgaaaatgttcttgagcttctttgtcaaaagtcgttcttcaggat
+cttttccgaatgtggagtacggtagcttcagttgaccgattccatgttca
+gctgaaattgacccgccgtgatcgacaacccattcgtagaggaagggata
+gagcctggaatttgaaattattaatagaattaaaattttataaaaaagaa
+aaatctcgaaacttacaatttttcaagttcttcattgtgtttttcagatg
+taatatttaaatgagtgtttccatctcccaaatgtccataagtgacaatt
+cttttagccaaagaaccacatcgttccttcatcacattcgtcaattcata
+ataattttccaatggtaaagaaacatcatgcttatagacatatccatctc
+tggtaaccgccaatggtgcactttctctcaattgccacatcttcgtagct
+tctgcagaagatccagcgagcactccgtcgataatcagattttttgagag
+gcattcatccaaaaatgcgctcattttctccatatcgtgatcttcattgg
+atcctgatgtttcgacaaggatcgagaatggggttggagcattcagtact
+gggtgcaatcctagattcgttttcaaacattccatcgtagcatcgtcgag
+aagttcgaaggaggaaaggatttcagtgaggctggattttgcaagcttca
+gtacttcgcagcattttttgaaggattcgatgcctgaaaaaaattagaaa
+ttgaaaaatttgaacccattatataaatattcaacctaccaagcatcgca
+ctttgtacacttttcggtttaggaaccgcagtcattgtgacgcttgtgat
+aacacccaactgcccttcacttcccaagaataggtgtggagtgtgcaaag
+ttgtgttgtccttccgaatgcttgatcccaaatgtagaacagttccatgt
+tcatcgggaagaaccaccgtgagcccgagaagatgtgcgtgaagacttcc
+gtatcgaatcaaccgaatccctcctgcacacgtggcaatatttcctccaa
+tctgacaggatcctttggctccgagatcaaaaggcatcatatatccgagt
+tttgcaagtttgttgtccaagtcttccagaataaaaccagaatcacactt
+gagaattcccattgtgtcgtcgaaagagaattgcttgttgattttattca
+ttgatataacaacttcatcatgtactggaattgatccaccaacgagtcct
+gtattccctccttgtgggactactgccaatttgttcttggagcaatacgc
+caatattgcagaaacctcttcggtgctcttcgggtagaggacgacactgc
+caggacctggaaattaaaacatttaatatttaaagtacctatttaatatt
+aaataaacctaatcttaaaatacaaatacctttaaattggcctgtccaat
+ctgtagtatgatttgtaatatcgtccttcttcactgcatcttgcccgaga
+aaattctcaaatgccattaaatccgactgcatcacttttgcaaatccttc
+atgtctggcggcaagaactgctgcgtagcttctagttggtcttctgattc
+gtggcaagattttcagaaacatctgaattcagaaacttttcaaaaaataa
+cttgaaacttcaaaagaaatagtaggagacaaagctcggctaggtgaccg
+
+>chrIII:2172325-2172669
+CAGGCAGTCAGTCAGTCTCTCTCCACTCACATTCAGTCAGTCAGTGACCA
+TCACCAGGTTGTGTGTGAGCCCCTTCCATTATTCTTCTGAACCCCCCTCC
+CAACGCGGGAAGACTCGCCGGCAATGACACTGGTTATCTTTTCCATCGTG
+GAATGCCCCCCATTGATTTTTTCCCCTTTTCGGGGGGAAAAAATTGGAAA
+CGAGAAAGGTATCGGGTGTCATAGCCGGCGTGATCATCTTCCTCAAGTAT
+TCCTCTGCTGATTTCGATATTCGGAGGAGCTCGGAGGCTGTTCAGCTGTA
+AAATTGGTTGATTAAGCTCAAAAATCGGCGTTAACGCGGCTTTCC
diff -r 000000000000 -r eaac585f172a test-data/mature_ref_other_species.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mature_ref_other_species.fa	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,490 @@
+>cbr-let-7
+TGAGGTAGTAGGTTGTATAGTT
+>cbr-lin-4
+TCCCTGAGACCTCAAGTGTGA
+>cbr-miR-1
+TGGAATGTAAAGAAGTATGTA
+>cbr-miR-34
+AGGCAGTGTGGTTAGCTGGTTG
+>cbr-miR-42
+CACCGGGTTAACATCTACAG
+>cbr-miR-43
+TATCACAGTTTACTTGCTGTCGC
+>cbr-miR-44
+TGACTAGAGACACATTCAGCT
+>cbr-miR-45
+TGACTAGAGACACATTCAGCT
+>cbr-miR-46
+TGTCATGGAGTCGCTCTCTTCA
+>cbr-miR-47
+TGTCATGGAGGCGCTCTCTTCA
+>cbr-miR-48
+TGAGGTAGGCTCAGTAGATGCGA
+>cbr-miR-49
+AAGCACCACGAGAAGCTGCAGA
+>cbr-miR-50
+TGATATGTCTGATATTCTTGGGTT
+>cbr-miR-52
+CACCCGTACATATGTTTCCGTGCT
+>cbr-miR-57
+TACCCTGTAGATCGAGCTGTGTGT
+>cbr-miR-58
+TGAGATCGTTCAGTACGGCAAT
+>cbr-miR-60
+TATTATGCACATTTTCTAGTCCA
+>cbr-miR-67
+TCACAACCTCCTAGAAAGAGTAGA
+>cbr-miR-71
+TGAAAGACATGGGTAGTGA
+>cbr-miR-73
+TGGCAAGATGTTGGCAGTTCAGT
+>cbr-miR-74
+TGGCAAGAAATGGCAGTCTAGA
+>cbr-miR-75
+TTAAAGCTACCAACCGCCTTCA
+>cbr-miR-77
+TTCATCAGGCCATAGCTGTCCA
+>cbr-miR-79
+ATAAAGCTAGGTTACCAAAGCT
+>cbr-miR-80
+TGAGATCATTAGTTGAAAGCCGA
+>cbr-miR-81
+TGAGATCATCGTGAAAGCTAGT
+>cbr-miR-82
+TGAGATCATCGTGAAAGCCAGT
+>cbr-miR-85
+TACAAAGTATTTGAAAAGGCGTGC
+>cbr-miR-86
+TAAGTGAATGCTTTGCCACAGTC
+>cbr-miR-87
+GTGAGCAAAGTTTCAGGTGT
+>cbr-miR-90
+TGATATGTTGTTTGAATGCCCC
+>cbr-miR-124
+TAAGGCACGCGGTGAATGCCA
+>cbr-miR-228
+AATGGCACTGCATGAATTCACGG
+>cbr-miR-230
+GTATTAGTTGTGCGACCAGGAAA
+>cbr-miR-232
+TAAATGCATCTTAACTGCGGTGA
+>cbr-miR-233
+TTGAGCAATGCGCATGTGCGGGA
+>cbr-miR-234
+TTATTGCTCGAGAATACCCTT
+>cbr-miR-236
+TAATACTGTCAGGTAATGACGCT
+>cbr-miR-241
+TGAGGTAGGTGTGAGAAATGA
+>cbr-miR-244
+TCTTTGGTTGTACAAAGTGGTATG
+>cbr-miR-245
+ATTGGTCCCCTCCAAGTAGCTC
+>cbr-miR-248
+TACACGTGCTCGGATAACGCTCA
+>cbr-miR-250
+TCACAGTCAACTGTTGGCACGG
+>cbr-miR-251
+TTAAGTAGTGGTGCCGCTCTTATT
+>cbr-miR-252
+TAAGTAGTAGTGCCGCAGGTAAC
+>cbr-miR-259
+AAATCTCATCCTAATCTGGTT
+>cbr-miR-268
+GGCAAGAATTAGAAGCAGTTTTGGT
+>cbr-miR-72
+AGGCAGATGTTGGCATAGC
+>cbr-lsy-6
+TTTTGTATGAGACGCATTCCG
+>cbr-miR-353
+CAAGTATCATGTGTTGGTATC
+>cbr-miR-64
+CATGACACTGAAGCGTGTACGGA
+>cbr-miR-231
+TAAGCTCGTGAACAACAGGCAGGA
+>cbr-miR-356
+ATGAGCAACGCGAACAAATCC
+>cbr-miR-83
+TAGCACCATATAAATTCAGTGT
+>cbr-miR-246
+TTACATGTATTGGGTAGGAGCT
+>cbr-miR-51
+TACCCGTAGCTCCTTGCCATGTT
+>cbr-miR-357
+AAAATGCCAGTCATTGACGGA
+>cbr-miR-253
+CACACCTCACTAACACTAACT
+>cbr-miR-70
+TAATACGTGATTGGTGTTCCCAG
+>cbr-miR-358
+CAATTGGTATCCTTAGTCGTGG
+>cbr-miR-61
+TGACTAGAACCTTGACTCTGCTC
+>cbr-miR-360
+TGACCGTAATCCCGTTCACAA
+>cbr-miR-239a
+TTTGTACTACAATTAGGTACTGG
+>cbr-miR-249
+TCACAGGATTTTTGAGTGTTGC
+>cbr-miR-240
+TACTGGCCTCCAAATTTTCGCT
+>cbr-miR-254
+TGCAAATCTTTTGCAACTGTATA
+>cbr-miR-239b
+TTGTACTGCACAAAAGTACTG
+>cbr-miR-62
+TGATATGTAATCTAGCTTACAG
+>cbr-miR-55
+TACCCGTATATTTTTCTGCCGAG
+>cbr-miR-84
+TGAGGTAGTTTGCAATGCTGTC
+>cbr-miR-354
+ACCTTGTTTGTTGCTGCTCCT
+>cbr-miR-35
+TCACCGGGTGAAAACTTGCAAG
+>cbr-miR-36
+TCACCGGGTGAAAATTCGCAAT
+>cbr-miR-38
+TCACCGGGAGACAACCTGGTAT
+>cbr-miR-39
+TCACCGGGTGAAAAACGGTTAG
+>cbr-miR-40
+TCACCGGGTGTCAATCAGCTAG
+>cbr-miR-41
+TCACCGGGTGAAAAACTCCCA
+>cbr-miR-355
+TTTGTTTTAGCCTGAGCTATG
+>cbr-miR-784
+TGGCACAATACCTGTATGTAGA
+>cbr-miR-785
+TAAGTGAATACTCTGTGTTGA
+>cbr-miR-786
+TAATGCCCTGTACGAGATTTGGT
+>cbr-miR-787
+TAAGCTCGTCTTAGTTTTCCTCT
+>cbr-miR-788
+TCCGCTTCTCAATGCTCCATTTGCAA
+>cbr-miR-789a
+TCCCTGCCTGGGTCAAATGTTTT
+>cbr-miR-789b
+GCCCTGCCTGGGTCACCATGTGA
+>cbr-miR-790
+CTTGGCACTCGCGAACACCGCG
+>cbr-miR-791
+ATTGGCACTCCGCTGATTTGGTG
+>cbr-miR-792
+TTGAAATTTTTTCTATTTTCGGT
+>cbr-miR-235
+TATTGCACTTTCCCTGGCCAGA
+>cbr-miR-242
+TTGCGTAGGCCTTTGTTTCGA
+>cbr-miR-255
+AAACTGAAGAGATTTTTTACAG
+>cbr-miR-359
+TCACTGGTTATCCTCTGTCGAA
+>cbr-miR-392
+TATCATCGATCATGTGAGCTGT
+>dme-miR-1
+TGGAATGTAAAGAAGTATGGAG
+>dme-miR-2a
+TATCACAGCCAGCTTTGATGAGC
+>dme-miR-2b
+TATCACAGCCAGCTTTGAGGAGC
+>dme-miR-3
+TCACTGGGCAAAGTGTGTCTCA
+>dme-miR-4
+ATAAAGCTAGACAACCATTGA
+>dme-miR-5
+AAAGGAACGATCGTTGTGATATG
+>dme-miR-6
+TATCACAGTGGCTGTTCTTTTT
+>dme-miR-7
+TGGAAGACTAGTGATTTTGTTGT
+>dme-miR-8
+TAATACTGTCAGGTAAAGATGTC
+>dme-miR-9a
+TCTTTGGTTATCTAGCTGTATGA
+>dme-miR-10
+CAAATTCGGTTCTAGAGAGGTTT
+>dme-miR-11
+CATCACAGTCTGAGTTCTTGC
+>dme-miR-12
+TGAGTATTACATCAGGTACTGGT
+>dme-miR-13a
+TATCACAGCCATTTTGATGAGT
+>dme-miR-13b
+TATCACAGCCATTTTGACGAGT
+>dme-miR-14
+TCAGTCTTTTTCTCTCTCCTA
+>dme-miR-263a
+GTTAATGGCACTGGAAGAATTCAC
+>dme-miR-184
+TGGACGGAGAACTGATAAGGGC
+>dme-miR-274
+TTTTGTGACCGACACTAACGGGTAAT
+>dme-miR-275
+TCAGGTACCTGAAGTAGCGCGCG
+>dme-miR-92a
+CATTGCACTTGTCCCGGCCTAT
+>dme-miR-219
+TGATTGTCCAAACGCAATTCTTG
+>dme-miR-276a
+TAGGAACTTCATACCGTGCTCT
+>dme-miR-277
+TAAATGCACTATCTGGTACGACA
+>dme-miR-278
+TCGGTGGGACTTTCGTCCGTTT
+>dme-miR-133
+TTGGTCCCCTTCAACCAGCTGT
+>dme-miR-279
+TGACTAGATCCACACTCATTAA
+>dme-miR-33
+AGGTGCATTGTAGTCGCATTG
+>dme-miR-280
+TGTATTTACGTTGCATATGAAATGATA
+>dme-miR-281
+TGTCATGGAATTGCTCTCTTTGT
+>dme-miR-282
+AATCTAGCCTCTACTAGGCTTTGTCTGT
+>dme-miR-283
+TAAATATCAGCTGGTAATTCT
+>dme-miR-284
+TGAAGTCAGCAACTTGATTCCAGCAATTG
+>dme-miR-34
+TGGCAGTGTGGTTAGCTGGTTGTG
+>dme-miR-124
+TAAGGCACGCGGTGAATGCCAAG
+>dme-miR-79
+TAAAGCTAGATTACCAAAGCAT
+>dme-miR-276b
+TAGGAACTTAATACCGTGCTCT
+>dme-miR-210
+TTGTGCGTGTGACAGCGGCTA
+>dme-miR-285
+TAGCACCATTCGAAATCAGTGC
+>dme-miR-100
+AACCCGTAAATCCGAACTTGTG
+>dme-miR-92b
+AATTGCACTAGTCCCGGCCTGC
+>dme-miR-286
+TGACTAGACCGAACACTCGTGCT
+>dme-miR-287
+TGTGTTGAAAATCGTTTGCAC
+>dme-miR-87
+TTGAGCAAAATTTCAGGTGTG
+>dme-miR-263b
+CTTGGCACTGGGAGAATTCAC
+>dme-miR-288
+TTTCATGTCGATTTCATTTCATG
+>dme-miR-289
+TAAATATTTAAGTGGAGCCTGCGACT
+>dme-bantam
+TGAGATCATTTTGAAAGCTGATT
+>dme-miR-303
+TTTAGGTTTCACAGGAAACTGGT
+>dme-miR-31b
+TGGCAAGATGTCGGAATAGCTG
+>dme-miR-304
+TAATCTCAATTTGTAAATGTGAG
+>dme-miR-305
+ATTGTACTTCATCAGGTGCTCTG
+>dme-miR-9c
+TCTTTGGTATTCTAGCTGTAGA
+>dme-miR-306
+TCAGGTACTTAGTGACTCTCAA
+>dme-miR-9b
+TCTTTGGTGATTTTAGCTGTATG
+>dme-let-7
+TGAGGTAGTAGGTTGTATAGT
+>dme-miR-125
+TCCCTGAGACCCTAACTTGTGA
+>dme-miR-307
+TCACAACCTCCTTGAGTGAG
+>dme-miR-308
+AATCACAGGATTATACTGTGAG
+>dme-miR-31a
+TGGCAAGATGTCGGCATAGCTGA
+>dme-miR-309
+GCACTGGGTAAAGTTTGTCCTA
+>dme-miR-310
+TATTGCACACTTCCCGGCCTTT
+>dme-miR-311
+TATTGCACATTCACCGGCCTGA
+>dme-miR-312
+TATTGCACTTGAGACGGCCTGA
+>dme-miR-313
+TATTGCACTTTTCACAGCCCGA
+>dme-miR-314
+TATTCGAGCCAATAAGTTCGG
+>dme-miR-315
+TTTTGATTGTTGCTCAGAAAGC
+>dme-miR-316
+TGTCTTTTTCCGCTTACTGGCG
+>dme-miR-317
+TGAACACAGCTGGTGGTATCCAGT
+>dme-miR-318
+TCACTGGGCTTTGTTTATCTCA
+>dme-miR-2c
+TATCACAGCCAGCTTTGATGGGC
+>dme-miR-iab-4-5p
+ACGTATACTGAATGTATCCTGA
+>dme-miR-iab-4-3p
+CGGTATACCTTCAGTATACGTAAC
+>dme-miR-iab-4as-5p
+TTACGTATACTGAAGGTATACCG
+>dme-miR-iab-4as-3p
+GGATACATTCAGTATACGTTTA
+>dme-miR-954
+TCTGGGTGTTGCGTTGTGTGT
+>dme-miR-955
+CATCGTGCAGAGGTTTGAGTGTC
+>dme-miR-190
+AGATATGTTTGATATTCTTGGTTG
+>dme-miR-193
+TACTGGCCTACTAAGTCCCAAC
+>dme-miR-956
+TTTCGAGACCACTCTAATCCATT
+>dme-miR-957
+TGAAACCGTCCAAAACTGAGGC
+>dme-miR-958
+TGAGATTCTTCTATTCTACTTT
+>dme-miR-375
+TTTGTTCGTTTGGCTTAAGTTA
+>dme-miR-959
+TTGTCATCGGGGGTATTATGAA
+>dme-miR-960
+TGAGTATTCCAGATTGCATAGC
+>dme-miR-961
+TTTGATCACCAGTAACTGAGAT
+>dme-miR-962
+ATAAGGTAGAGAAATTGATGCTGTC
+>dme-miR-963
+ACAAGGTAAATATCAGGTTGTTTC
+>dme-miR-964
+TTAGAATAGGGGAGCTTAACTT
+>dme-miR-932
+TCAATTCCGTAGTGCATTGCAG
+>dme-miR-965
+TAAGCGTATAGCTTTTCCCCTT
+>dme-miR-966
+TGTGGGTTGTGGGCTGTGTGG
+>dme-miR-967
+AGAGATACCTCTGGAGAAGCG
+>dme-miR-1002
+TTAAGTAGTGGATACAAAGGGCGA
+>dme-miR-968
+TAAGTAGTATCCATTAAAGGGTTG
+>dme-miR-969
+GAGTTCCACTAAGCAAGTTTT
+>dme-miR-970
+TCATAAGACACACGCGGCTAT
+>dme-miR-971
+TTGGTGTTACTTCTTACAGTGA
+>dme-miR-972
+TGTACAATACGAATATTTAGGC
+>dme-miR-973
+TGGTTGGTGGTTGAACTTCGATTTT
+>dme-miR-974
+AAGCGAGCAAAGAAGTAGTATT
+>dme-miR-975
+TAAACACTTCCTACATCCTGTAT
+>dme-miR-976
+TTGGATTAGTTATCATCAATGC
+>dme-miR-977
+TGAGATATTCACGTTGTCTAA
+>dme-miR-978
+TGTCCAGTGCCGTAAATTGCAG
+>dme-miR-979
+TTCTTCCCGAACTCAGGCTAA
+>dme-miR-980
+TAGCTGCCTTGTGAAGGGCTTA
+>dme-miR-981
+TTCGTTGTCGACGAAACCTGCA
+>dme-miR-982
+TCCTGGACAAATATGAAGTAAAT
+>dme-miR-983
+ATAATACGTTTCGAACTAATGA
+>dme-miR-984
+TGAGGTAAATACGGTTGGAATTT
+>dme-miR-927
+TTTAGAATTCCTACGCTTTACC
+>dme-miR-985
+CAAATGTTCCAATGGTCGGGCA
+>dme-miR-986
+TCTCGAATAGCGTTGTGACTGA
+>dme-miR-987
+TAAAGTAAATAGTCTGGATTGATG
+>dme-miR-988
+CCCCTTGTTGCAAACCTCACGC
+>dme-miR-989
+TGTGATGTGACGTAGTGGAAC
+>dme-miR-137
+TATTGCTTGAGAATACACGTAG
+>dme-miR-990
+ATTCACCGTTCTGAGTTGGCC
+>dme-miR-991
+TTAAAGTTGTAGTTTGGAAAGT
+>dme-miR-992
+AGTACACGTTTCTGGTACTAAG
+>dme-miR-929
+CTCCCTAACGGAGTCAGATTG
+>dme-miR-993
+GAAGCTCGTCTCTACAGGTATCT
+>dme-miR-994
+CTAAGGAAATAGTAGCCGTGAT
+>dme-miR-995
+TAGCACCACATGATTCGGCTT
+>dme-miR-996
+TGACTAGATTTCATGCTCGTCT
+>dme-miR-252
+CTAAGTACTAGTGCCGCAGGAG
+>dme-miR-997
+CCCAAACTCGAAGGAGTTTCA
+>dme-miR-998
+TAGCACCATGAGATTCAGCTC
+>dme-miR-999
+TGTTAACTGTAAGACTGTGTCT
+>dme-miR-1000
+ATATTGTCCTGTCACAGCAGT
+>dme-miR-1001
+TGGGTAAACTCCCAAGGATCA
+>dme-miR-1003
+TCTCACATTTACATATTCACAG
+>dme-miR-1004
+TCTCACATCACTTCCCTCACAG
+>dme-miR-1005
+TCTGGAATCTTTAATTCGCAG
+>dme-miR-1006
+TAAATTCGATTTCTTATTCATAG
+>dme-miR-1007
+TAAGCTCAATTAACTGTTTGCA
+>dme-miR-1008
+TCACAGCTTTTTGTGTTTACA
+>dme-miR-1009
+TCTCAAAAATTGTTACATTTCAG
+>dme-miR-1010
+TTTCACCTATCGTTCCATTTGCAG
+>dme-miR-1011
+TTATTGGTTCAAATCGCTCGCAG
+>dme-miR-1012
+TTAGTCAAAGATTTTCCCCATAG
+>dme-miR-1013
+ATAAAAGTATGCCGAACTCG
+>dme-miR-1014
+AAAATTCATTTTCATTTGCAG
+>dme-miR-1015
+TCCTGGGACATCTCTCTTGCAG
+>dme-miR-1016
+TTCACCTCTCTCCATACTTAG
+>dme-miR-1017
+GAAAGCTCTACCCAAACTCATCC
+>dme-miR-2279
+TTTCACGCGAAGATATTTATTT
+>dme-miR-2280
+TCTTAGCTTGGCAATAAAATAT
+>dme-miR-2281
+TATCTGTATCTGCAGTATTGC
+>dme-miR-2282
+ATCGGTGAGCTAAAAATAGAAT
+>dme-miR-2283
+GAAAATATCATGAATACGACAAT
diff -r 000000000000 -r eaac585f172a test-data/mature_ref_this_species.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mature_ref_this_species.fa	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,14 @@
+>cel-miR-36
+TCACCGGGTGAAAATTCGCATG
+>cel-miR-37
+TCACCGGGTGAACACTTGCAGT
+>cel-miR-38
+TCACCGGGAGAAAAACTGGAGT
+>cel-miR-39
+TCACCGGGTGTAAATCAGCTTG
+>cel-miR-40
+TCACCGGGTGTACATCAGCTAA
+>cel-miR-41
+TCACCGGGTGAAAAATCACCTA
+>cel-miR-229
+AATGACACTGGTTATCTTTTCCATCG
diff -r 000000000000 -r eaac585f172a test-data/output.mrd
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output.mrd	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,2108 @@
+>chrII:11534525-11540624_7
+score total		      102170.8
+score for star read(s)	           3.9
+score for read counts	      102159.9
+score for mfe		           2.4
+score for randfold	           1.6
+score for cons. seed	             3
+miRNA with same seed	    cbr-miR-35
+total read count	        200394
+mature read count	        200381
+loop read count		             0
+star read count		            13
+exp             fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
+obs             fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
+pri_seq         caacuauuauucucggaucagaucgagccauugcugguuucuuccacagugguacuuuccauuagaacuaucaccggguggaaacuagcaguggcucgaucuuuuccacu
+pri_struct      ..............(((..(((((((((((((((((((((((.((.(.((((((.(((......))).)))))).))).)))))))))))))))))))))))..)))...	#MM
+seq_377956_x1   ...............................ugcugguuucuuccacagugg..........................................................	0
+seq_377882_x1   ...............................ugAugguuucuuccacaguggu.........................................................	1
+seq_375231_x11  ...............................ugcugguuucuuccacaguggua........................................................	0
+seq_377915_x1   ................................................................gaacuaucaccggguggaaacuagcag...................	0
+seq_378313_x1   ....................................................................Aaucaccggguggaaacuag......................	1
+seq_378070_x1   ....................................................................Aaucaccggguggaaacuagc.....................	1
+seq_374207_x17  ....................................................................Aaucaccggguggaaacuagcag...................	1
+seq_365952_x99  ....................................................................Aaucaccggguggaaacuagcagu..................	1
+seq_377777_x1   ....................................................................uCucaccggguggaaacuagcagu..................	1
+seq_377818_x1   .....................................................................Cucaccggguggaaacuagca....................	1
+seq_378115_x1   .....................................................................aucaccggguggaaacuagca....................	0
+seq_377479_x2   .....................................................................aucaccggguggaaacuagcag...................	0
+seq_377175_x3   .....................................................................Cucaccggguggaaacuagcag...................	1
+seq_377327_x2   .....................................................................Uucaccggguggaaacuagcag...................	1
+seq_369310_x61  .....................................................................Cucaccggguggaaacuagcagu..................	1
+seq_377793_x1   .....................................................................aucaccgggGggaaacuagcagu..................	1
+seq_377962_x1   .....................................................................aucaAcggguggaaacuagcagu..................	1
+seq_378051_x1   .....................................................................aucaccggguggaaaAuagcagu..................	1
+seq_378323_x1   .....................................................................aucaccggguggaaacuagAagu..................	1
+seq_371516_x35  .....................................................................aucaccggguggaaacuagcagu..................	0
+seq_377055_x3   .....................................................................aucaccggguggaaacuagcagC..................	1
+seq_377970_x1   .....................................................................aucaccggguggaaacuagcagG..................	1
+seq_377511_x2   .....................................................................Uucaccggguggaaacuagcagu..................	1
+seq_378079_x1   .....................................................................aucaccggguggaaacuagcaguA.................	1
+seq_377431_x2   .....................................................................aucaccggguggaaacuagcaguU.................	1
+seq_377752_x1   ......................................................................ucaccggguggaaaAuag......................	1
+seq_377443_x2   ......................................................................ucaccgggCggaaacuag......................	1
+seq_378226_x1   ......................................................................ucaccCgguggaaacuag......................	1
+seq_377974_x1   ......................................................................ucaccgggGggaaacuag......................	1
+seq_378168_x1   ......................................................................ucaUcggguggaaacuag......................	1
+seq_377959_x1   ......................................................................ucaAcggguggaaacuag......................	1
+seq_377875_x1   ......................................................................ucaccggguggaaaUuag......................	1
+seq_377878_x1   ......................................................................ucaccggguCgaaacuag......................	1
+seq_378112_x1   ......................................................................ucaccggguggaNacuag......................	1
+seq_378013_x1   ......................................................................ucaccggguggaaacuaC......................	1
+seq_366886_x88  ......................................................................ucaccggguggaaacuag......................	0
+seq_377813_x1   ......................................................................ucaccgggCggaaacuagc.....................	1
+seq_377341_x2   ......................................................................ucaccggguggaaacuaCc.....................	1
+seq_378124_x1   ......................................................................Ccaccggguggaaacuagc.....................	1
+seq_378326_x1   ......................................................................ucaccgggugAaaacuagc.....................	1
+seq_377088_x3   ......................................................................ucaccgggGggaaacuagc.....................	1
+seq_378155_x1   ......................................................................ucaccgggugCaaacuagc.....................	1
+seq_377717_x2   ......................................................................ucaccggguggaaacuCgc.....................	1
+seq_377885_x1   ......................................................................ucaccggguggaCacuagc.....................	1
+seq_377957_x1   ......................................................................ucaccggguggGaacuagc.....................	1
+seq_376727_x4   ......................................................................ucaccggguggaNacuagc.....................	1
+seq_363229_x131 ......................................................................ucaccggguggaaacuagc.....................	0
+seq_377513_x2   ......................................................................ucacAggguggaaacuagc.....................	1
+seq_378006_x1   ......................................................................ucaAcggguggaaacuagc.....................	1
+seq_377383_x2   ......................................................................ucaccggguggaaaGuagc.....................	1
+seq_377539_x2   ......................................................................ucaccggguggaaacuagU.....................	1
+seq_377451_x2   ......................................................................ucaccggguggaaacuagA.....................	1
+seq_372840_x25  ......................................................................ucaccgggCggaaacuagca....................	1
+seq_377947_x1   ......................................................................ucGccggguggaaacuagca....................	1
+seq_376538_x5   ......................................................................uAaccggguggaaacuagca....................	1
+seq_377946_x1   ......................................................................ucaccggguggaaacGagca....................	1
+seq_375901_x9   ......................................................................ucaccggguggaaacuaUca....................	1
+seq_377531_x2   ......................................................................ucaccgggugCaaacuagca....................	1
+seq_378056_x1   ......................................................................ucaccggguggGaacuagca....................	1
+seq_376791_x4   ......................................................................ucaccggguggaGacuagca....................	1
+seq_373200_x23  ......................................................................ucaccggguggaNacuagca....................	1
+seq_377848_x1   ......................................................................ucaccggguggaaacuNgca....................	1
+seq_377417_x2   ......................................................................ucaccggguggaaCcuagca....................	1
+seq_377003_x4   ......................................................................ucaccgAguggaaacuagca....................	1
+seq_376401_x6   ......................................................................ucaccggCuggaaacuagca....................	1
+seq_377127_x3   ......................................................................ucaccggAuggaaacuagca....................	1
+seq_378107_x1   ......................................................................uUaccggguggaaacuagca....................	1
+seq_376935_x4   ......................................................................Gcaccggguggaaacuagca....................	1
+seq_375025_x13  ......................................................................ucaccggguggaaacuagcU....................	1
+seq_377653_x2   ......................................................................ucaccggguggaaacCagca....................	1
+seq_313497_x2021......................................................................ucaccggguggaaacuagca....................	0
+seq_374657_x15  ......................................................................ucaccggguggaaaAuagca....................	1
+seq_377613_x2   ......................................................................ucaccggguUgaaacuagca....................	1
+seq_375675_x10  ......................................................................ucaccggguggaaacuagcG....................	1
+seq_371371_x37  ......................................................................ucaccgggGggaaacuagca....................	1
+seq_376763_x4   ......................................................................ucacUggguggaaacuagca....................	1
+seq_375934_x8   ......................................................................ucaccggguggaaacuCgca....................	1
+seq_377599_x2   ......................................................................ucaccggguggaaacuagUa....................	1
+seq_377839_x1   ......................................................................Ncaccggguggaaacuagca....................	1
+seq_378050_x1   ......................................................................uNaccggguggaaacuagca....................	1
+seq_376799_x4   ......................................................................ucaccggguggaaacuaAca....................	1
+seq_376638_x5   ......................................................................ucaccggguggaCacuagca....................	1
+seq_373823_x19  ......................................................................ucaccgggAggaaacuagca....................	1
+seq_376803_x4   ......................................................................ucaccggguggaaacuagcC....................	1
+seq_377683_x2   ......................................................................ucaccggguggaaacuagAa....................	1
+seq_377112_x3   ......................................................................ucaccggguggCaacuagca....................	1
+seq_376658_x5   ......................................................................ucaccggguggaaaUuagca....................	1
+seq_376485_x6   ......................................................................ucaccggguggUaacuagca....................	1
+seq_376169_x7   ......................................................................ucaccggguggaaacuagNa....................	1
+seq_370746_x41  ......................................................................ucacAggguggaaacuagca....................	1
+seq_375910_x8   ......................................................................ucaAcggguggaaacuagca....................	1
+seq_378190_x1   ......................................................................ucaccggguCgaaacuagca....................	1
+seq_377193_x3   ......................................................................ucaccgggugUaaacuagca....................	1
+seq_376407_x6   ......................................................................Acaccggguggaaacuagca....................	1
+seq_377283_x3   ......................................................................ucaUcggguggaaacuagca....................	1
+seq_377643_x2   ......................................................................uGaccggguggaaacuagca....................	1
+seq_378128_x1   ......................................................................ucaccggguggaaUcuagca....................	1
+seq_377561_x2   ......................................................................ucaccggguggaaacuaCca....................	1
+seq_375405_x10  ......................................................................ucaccgCguggaaacuagca....................	1
+seq_377419_x2   ......................................................................ucaccggguAgaaacuagca....................	1
+seq_377377_x2   ......................................................................ucaccAgguggaaacuagca....................	1
+seq_376497_x6   ......................................................................ucaccUgguggaaacuagca....................	1
+seq_377292_x3   ......................................................................Ccaccggguggaaacuagca....................	1
+seq_377034_x3   ......................................................................ucaccgggugAaaacuagca....................	1
+seq_378087_x1   ......................................................................ucaccgggNggaaacuagca....................	1
+seq_377235_x3   ......................................................................ucaccggguggaaacAagcag...................	1
+seq_373154_x23  ......................................................................ucaccUgguggaaacuagcag...................	1
+seq_361443_x144 ......................................................................ucaccgggGggaaacuagcag...................	1
+seq_375100_x12  ......................................................................uNaccggguggaaacuagcag...................	1
+seq_376046_x8   ......................................................................ucaccggguggaaacCagcag...................	1
+seq_373568_x20  ......................................................................ucaccggguggaaaUuagcag...................	1
+seq_375012_x13  ......................................................................ucaccggguUgaaacuagcag...................	1
+seq_377076_x3   ......................................................................ucaccggguggaaacuagcGg...................	1
+seq_374715_x14  ......................................................................ucaccggguggGaacuagcag...................	1
+seq_370705_x41  ......................................................................ucaccggguggaaacuaUcag...................	1
+seq_377563_x2   ......................................................................Acaccggguggaaacuagcag...................	1
+seq_362702_x132 ......................................................................ucaccggguggaaacuagcaU...................	1
+seq_373084_x24  ......................................................................ucaccggguggaaacuCgcag...................	1
+seq_277590_x9943......................................................................ucaccggguggaaacuagcag...................	0
+seq_371687_x34  ......................................................................ucaccggguggaaacuagcaA...................	1
+seq_376246_x7   ......................................................................ucaccggUuggaaacuagcag...................	1
+seq_373356_x22  ......................................................................ucaccgggugCaaacuagcag...................	1
+seq_374455_x16  ......................................................................ucaccggguggaaacuaCcag...................	1
+seq_377037_x3   ......................................................................ucUccggguggaaacuagcag...................	1
+seq_376413_x6   ......................................................................ucaccggguggaaUcuagcag...................	1
+seq_377325_x2   ......................................................................ucGccggguggaaacuagcag...................	1
+seq_376383_x6   ......................................................................ucCccggguggaaacuagcag...................	1
+seq_375242_x11  ......................................................................ucaccgUguggaaacuagcag...................	1
+seq_374471_x16  ......................................................................uGaccggguggaaacuagcag...................	1
+seq_374882_x13  ......................................................................ucaUcggguggaaacuagcag...................	1
+seq_378207_x1   ......................................................................ucaccggguggaaaNuagcag...................	1
+seq_373918_x19  ......................................................................ucaccggCuggaaacuagcag...................	1
+seq_373993_x18  ......................................................................ucaccggguggaaacuNgcag...................	1
+seq_373464_x21  ......................................................................ucaccggAuggaaacuagcag...................	1
+seq_376305_x6   ......................................................................ucaccgAguggaaacuagcag...................	1
+seq_375892_x9   ......................................................................ucaccggguggaaCcuagcag...................	1
+seq_374047_x18  ......................................................................ucaccggguggaaacuagAag...................	1
+seq_374813_x14  ......................................................................ucaccggguggaaacuagcaC...................	1
+seq_374986_x13  ......................................................................ucaccggguggaaaGuagcag...................	1
+seq_374827_x14  ......................................................................ucacUggguggaaacuagcag...................	1
+seq_374503_x16  ......................................................................uAaccggguggaaacuagcag...................	1
+seq_372763_x26  ......................................................................ucaccggguggaCacuagcag...................	1
+seq_375465_x10  ......................................................................ucaccggguggaaacuGgcag...................	1
+seq_375264_x11  ......................................................................ucaccgggugAaaacuagcag...................	1
+seq_375575_x10  ......................................................................ucaccggguggaaacuUgcag...................	1
+seq_378072_x1   ......................................................................ucaNcggguggaaacuagcag...................	1
+seq_375856_x9   ......................................................................Gcaccggguggaaacuagcag...................	1
+seq_364582_x111 ......................................................................ucaccgggCggaaacuagcag...................	1
+seq_372940_x24  ......................................................................ucaccggguggUaacuagcag...................	1
+seq_372523_x27  ......................................................................ucaccggguggaGacuagcag...................	1
+seq_375172_x12  ......................................................................ucaccggguggaaacuagcCg...................	1
+seq_375341_x11  ......................................................................ucaccggguAgaaacuagcag...................	1
+seq_378331_x1   ......................................................................Ncaccggguggaaacuagcag...................	1
+seq_375820_x9   ......................................................................ucaccgggugUaaacuagcag...................	1
+seq_377543_x2   ......................................................................ucaccggNuggaaacuagcag...................	1
+seq_375784_x9   ......................................................................ucaccggguggaUacuagcag...................	1
+seq_374275_x17  ......................................................................ucaGcggguggaaacuagcag...................	1
+seq_374582_x15  ......................................................................ucaccggguggaaacuagNag...................	1
+seq_377647_x2   ......................................................................ucaccggguCgaaacuagcag...................	1
+seq_371106_x39  ......................................................................ucaAcggguggaaacuagcag...................	1
+seq_357095_x189 ......................................................................ucacAggguggaaacuagcag...................	1
+seq_376225_x7   ......................................................................uUaccggguggaaacuagcag...................	1
+seq_374224_x17  ......................................................................ucaccggguggaaacuagcUg...................	1
+seq_377577_x2   ......................................................................ucaccggguggaaGcuagcag...................	1
+seq_364121_x117 ......................................................................ucaccgggAggaaacuagcag...................	1
+seq_374743_x14  ......................................................................ucaccggguggCaacuagcag...................	1
+seq_377298_x3   ......................................................................ucaccggguggaaacGagcag...................	1
+seq_370537_x43  ......................................................................ucaccgCguggaaacuagcag...................	1
+seq_376827_x4   ......................................................................ucacGggguggaaacuagcag...................	1
+seq_377575_x2   ......................................................................ucaccggguggaaacuagGag...................	1
+seq_366243_x94  ......................................................................ucaccggguggaaaAuagcag...................	1
+seq_376267_x7   ......................................................................ucaccCgguggaaacuagcag...................	1
+seq_374173_x17  ......................................................................ucaccggguggaaacuaAcag...................	1
+seq_376491_x6   ......................................................................ucaccAgguggaaacuagcag...................	1
+seq_366616_x91  ......................................................................ucaccggguggaNacuagcag...................	1
+seq_374921_x13  ......................................................................Ccaccggguggaaacuagcag...................	1
+seq_372294_x30  ......................................................................ucaccggguggaaacuagUag...................	1
+seq_353824_x217 ......................................................................ucaccggguggaaacuagcaUu..................	1
+seq_350246_x264 ......................................................................ucaccggguggCaacuagcagu..................	1
+seq_315518_x1866......................................................................ucaccgggCggaaacuagcagu..................	1
+seq_359581_x164 ......................................................................ucaccggguggaaUcuagcagu..................	1
+seq_362834_x132 ......................................................................ucaccggguggaaacuagcaAu..................	1
+seq_343209_x360 ......................................................................ucaccgggugAaaacuagcagu..................	1
+seq_370664_x41  ......................................................................ucaccggguggaaacAagcagu..................	1
+seq_358905_x171 ......................................................................ucaccggguggaUacuagcagu..................	1
+seq_365851_x101 ......................................................................ucaccggguAgaaacuagcagu..................	1
+seq_337854_x604 ......................................................................ucaAcggguggaaacuagcagu..................	1
+seq_356125_x198 ......................................................................ucaccggguggGaacuagcagu..................	1
+seq_356519_x194 ......................................................................ucaccAgguggaaacuagcagu..................	1
+seq_360382_x156 ......................................................................ucaccggguggaaacuaAcagu..................	1
+seq_346877_x304 ......................................................................ucaccggguggaaacuagcUgu..................	1
+seq_350773_x263 ......................................................................ucaccggguggaaacuagAagu..................	1
+seq_334503_x690 ......................................................................ucaccggguggaaacuagcagC..................	1
+seq_303609_x2808......................................................................ucaccgggGggaaacuagcagu..................	1
+seq_338458_x598 ......................................................................ucaccggguggaaacuaUcagu..................	1
+seq_378211_x1   ......................................................................ucaccggguggNaacuagcagu..................	1
+seq_364693_x111 ......................................................................ucaccggguggaaacGagcagu..................	1
+seq_371067_x39  ......................................................................ucaccggNuggaaacuagcagu..................	1
+seq_358554_x177 ......................................................................ucaccgAguggaaacuagcagu..................	1
+seq_324605_x1295......................................................................ucaccggguggaNacuagcagu..................	1
+seq_363360_x131 ......................................................................ucaccggguggaaaGuagcagu..................	1
+seq_350510_x263 ......................................................................ucaccggguggaaacuaCcagu..................	1
+seq_353161_x223 ......................................................................ucaccggguggaaacuNgcagu..................	1
+seq_369000_x64  ......................................................................ucaccggguggaaacuagcGgu..................	1
+seq_376811_x4   ......................................................................ucaccNgguggaaacuagcagu..................	1
+seq_354681_x211 ......................................................................ucaGcggguggaaacuagcagu..................	1
+seq_345626_x322 ......................................................................ucaccggguggaaaUuagcagu..................	1
+seq_371184_x38  ......................................................................ucacGggguggaaacuagcagu..................	1
+seq_348338_x283 ......................................................................ucaccggguggaaacuagUagu..................	1
+seq_346264_x309 ......................................................................ucaccggguggaaacuagcCgu..................	1
+seq_343924_x352 ......................................................................ucaccgggugCaaacuagcagu..................	1
+seq_306417_x2793......................................................................ucacAggguggaaacuagcagu..................	1
+seq_346573_x304 ......................................................................ucaccggguggUaacuagcagu..................	1
+seq_339056_x557 ......................................................................ucaccggguggaaacuagcagG..................	1
+seq_374612_x15  ......................................................................ucaccgggNggaaacuagcagu..................	1
+seq_367235_x86  ......................................................................ucaccCgguggaaacuagcagu..................	1
+seq_333000_x757 ......................................................................ucaccgCguggaaacuagcagu..................	1
+seq_377559_x2   ......................................................................ucNccggguggaaacuagcagu..................	1
+seq_340662_x508 ......................................................................ucaccggguggaCacuagcagu..................	1
+seq_317384_x1629......................................................................ucaccgggAggaaacuagcagu..................	1
+seq_370493_x44  ......................................................................ucGccggguggaaacuagcagu..................	1
+seq_357654_x183 ......................................................................uGaccggguggaaacuagcagu..................	1
+seq_336553_x669 ......................................................................ucaccggguggaaacuagcagA..................	1
+seq_362966_x132 ......................................................................ucaccgggugUaaacuagcagu..................	1
+seq_0_x149538   ......................................................................ucaccggguggaaacuagcagu..................	0
+seq_355722_x204 ......................................................................uUaccggguggaaacuagcagu..................	1
+seq_374567_x15  ......................................................................ucaNcggguggaaacuagcagu..................	1
+seq_367321_x85  ......................................................................ucaccggguggaaCcuagcagu..................	1
+seq_359246_x169 ......................................................................ucacUggguggaaacuagcagu..................	1
+seq_321959_x1326......................................................................ucaccggguggaaaAuagcagu..................	1
+seq_373688_x20  ......................................................................Ncaccggguggaaacuagcagu..................	1
+seq_352016_x236 ......................................................................ucaccggguggaaacuagNagu..................	1
+seq_349981_x265 ......................................................................ucaccggguUgaaacuagcagu..................	1
+seq_377079_x3   ......................................................................ucaccggguggaaaNuagcagu..................	1
+seq_355102_x209 ......................................................................ucaccggCuggaaacuagcagu..................	1
+seq_363620_x129 ......................................................................ucaccgUguggaaacuagcagu..................	1
+seq_348621_x282 ......................................................................ucaccggguggaaacuCgcagu..................	1
+seq_364914_x108 ......................................................................ucaccggUuggaaacuagcagu..................	1
+seq_356713_x192 ......................................................................Gcaccggguggaaacuagcagu..................	1
+seq_362015_x141 ......................................................................uNaccggguggaaacuagcagu..................	1
+seq_377049_x3   ......................................................................ucaccggguggaaacuagcagN..................	1
+seq_370988_x40  ......................................................................ucaccggguggaaacuagGagu..................	1
+seq_365750_x101 ......................................................................Acaccggguggaaacuagcagu..................	1
+seq_360538_x155 ......................................................................ucaccggguCgaaacuagcagu..................	1
+seq_358198_x178 ......................................................................ucaccggguggaaacuagcaCu..................	1
+seq_347766_x287 ......................................................................uAaccggguggaaacuagcagu..................	1
+seq_367734_x78  ......................................................................ucCccggguggaaacuagcagu..................	1
+seq_359907_x159 ......................................................................ucaccggguggaaacuGgcagu..................	1
+seq_349444_x269 ......................................................................ucaccUgguggaaacuagcagu..................	1
+seq_361151_x146 ......................................................................Ccaccggguggaaacuagcagu..................	1
+seq_344276_x345 ......................................................................ucaccggguggaGacuagcagu..................	1
+seq_376183_x7   ......................................................................ucaccggguggaaacuaNcagu..................	1
+seq_353605_x219 ......................................................................ucaccggAuggaaacuagcagu..................	1
+seq_359415_x166 ......................................................................ucaccggguggaaacCagcagu..................	1
+seq_371755_x33  ......................................................................ucUccggguggaaacuagcagu..................	1
+seq_355518_x204 ......................................................................ucaUcggguggaaacuagcagu..................	1
+seq_375811_x9   ......................................................................ucacNggguggaaacuagcagu..................	1
+seq_342436_x389 ......................................................................ucaccggguggaaacuUgcagu..................	1
+seq_370948_x40  ......................................................................ucaccggguggaaGcuagcagu..................	1
+seq_369608_x57  ......................................................................ucaccggguggaaacuagcagug.................	0
+seq_309210_x2159......................................................................ucaccggguggaaacuagcaguA.................	1
+seq_378140_x1   ......................................................................ucaccggguCgaaacuagcagug.................	1
+seq_378025_x1   ......................................................................ucaccggguUgaaacuagcagug.................	1
+seq_287533_x5429......................................................................ucaccggguggaaacuagcaguU.................	1
+seq_377923_x1   ......................................................................ucaccggguggaaaAuagcagug.................	1
+seq_377507_x2   ......................................................................ucaccggguggaUacuagcagug.................	1
+seq_369929_x51  ......................................................................ucaccggguggaaacuagcaguC.................	1
+seq_377181_x3   ......................................................................ucaccgggGggaaacuagcagug.................	1
+seq_378212_x1   ......................................................................ucaccggguggaaacuagcaAug.................	1
+seq_378218_x1   ......................................................................ucaccggguggaaacuagcagCg.................	1
+seq_378222_x1   ......................................................................ucaccgggCggaaacuagcagug.................	1
+seq_377304_x3   ......................................................................ucacAggguggaaacuagcagug.................	1
+seq_378319_x1   ......................................................................ucaccggguggaaacuagNagug.................	1
+seq_378109_x1   ......................................................................Gcaccggguggaaacuagcagug.................	1
+seq_377806_x1   ......................................................................ucaccggguggaCacuagcagug.................	1
+seq_378252_x1   ......................................................................ucaccgggugCaaacuagcagug.................	1
+seq_378135_x1   ......................................................................ucaccggguggaaacuagcagAgg................	1
+seq_377427_x2   ......................................................................ucaccggguggaaacuagcagugU................	1
+seq_376723_x4   ......................................................................ucaccggguggaaacuagcaguAg................	1
+seq_378093_x1   ......................................................................ucaccggguggaaacuagcagugg................	0
+seq_378199_x1   ......................................................................Ccaccggguggaaacuagcagugg................	1
+seq_377019_x3   ......................................................................ucaccggguggaaacuagcaguUg................	1
+seq_376939_x4   ......................................................................ucaccggguggaaacuagcagugC................	1
+seq_377675_x2   ......................................................................ucaccggguggaaacuagcagugCc...............	1
+seq_378133_x1   ......................................................................ucaccggguggaaacuagcaguCgc...............	1
+seq_377421_x2   ......................................................................ucaccggguggaaacuagcagugAc...............	1
+seq_377913_x1   ......................................................................ucaccggguggaaacuagcaguggA...............	1
+seq_378078_x1   ......................................................................ucaccggguggaaacuagcaguggU...............	1
+seq_377619_x2   ......................................................................ucaccggguggaaacuagcaguAgc...............	1
+seq_377807_x1   ......................................................................ucaccggguggaaacuagcagAggc...............	1
+seq_377898_x1   ......................................................................ucaccggguggaaacuagcagugAcu..............	1
+seq_378113_x1   ......................................................................ucaccggguggaaacuagcaguggAu..............	1
+seq_377401_x2   ......................................................................ucaccggguggaaacuagcaguggcG..............	1
+seq_378194_x1   ......................................................................ucaccggguggaaacuagcaguggcu..............	0
+seq_378167_x1   ......................................................................ucaccggguggaaacuagcaguCgcuc.............	1
+seq_378175_x1   ......................................................................ucaccggguggaaacuagcaguggUuc.............	1
+seq_377994_x1   .......................................................................caccggguggaaacuagca....................	0
+seq_378189_x1   .......................................................................caccggguggGaacuagcag...................	1
+seq_374960_x13  .......................................................................caccggguggaaacuagcag...................	0
+seq_377130_x3   .......................................................................caccgggAggaaacuagcagu..................	1
+seq_377925_x1   .......................................................................caccggguggaaacuagAagu..................	1
+seq_378300_x1   .......................................................................cCccggguggaaacuagcagu..................	1
+seq_377505_x2   .......................................................................Uaccggguggaaacuagcagu..................	1
+seq_365546_x102 .......................................................................caccggguggaaacuagcagu..................	0
+seq_377187_x3   .......................................................................caccggguggaaaAuagcagu..................	1
+seq_374407_x16  .......................................................................caccgggGggaaacuagcagu..................	1
+seq_377475_x2   .......................................................................caAcggguggaaacuagcagu..................	1
+seq_377908_x1   .......................................................................caccggguggaaacuagcaUu..................	1
+seq_378180_x1   .......................................................................caccggguggaaacuagcGgu..................	1
+seq_377250_x3   .......................................................................caccgggCggaaacuagcagu..................	1
+seq_375435_x10  .......................................................................caccggguggaaacuagcaguA.................	1
+seq_371551_x34  .......................................................................caccggguggaaacuagcaguU.................	1
+seq_378114_x1   ........................................................................accggguggaaGcuagca....................	1
+seq_377537_x2   ........................................................................accCgguggaaacuagca....................	1
+seq_375253_x11  ........................................................................accggguggaaacuagca....................	0
+seq_378294_x1   ........................................................................accggguggGaacuagca....................	1
+seq_377758_x1   ........................................................................accggguggaaacuagcCg...................	1
+seq_377711_x2   ........................................................................accgggAggaaacuagcag...................	1
+seq_368606_x67  ........................................................................accggguggaaacuagcag...................	0
+seq_377491_x2   ........................................................................accgggCggaaacuagcag...................	1
+seq_378325_x1   ........................................................................accggguggGaacuagcag...................	1
+seq_377944_x1   ........................................................................aAcggguggaaacuagcag...................	1
+seq_378146_x1   ........................................................................accggguggaGacuagcag...................	1
+seq_378272_x1   ........................................................................accgAguggaaacuagcag...................	1
+seq_378213_x1   ........................................................................accggguggaaacuaAcag...................	1
+seq_376449_x6   ........................................................................accgggGggaaacuagcag...................	1
+seq_377814_x1   ........................................................................accggguggaaacuaUcag...................	1
+seq_377816_x1   ........................................................................accggguggaaacuagcaC...................	1
+seq_377487_x2   ........................................................................accggguggaCacuagcagu..................	1
+seq_377976_x1   ........................................................................accgggugCaaacuagcagu..................	1
+seq_376895_x4   ........................................................................accggguggCaacuagcagu..................	1
+seq_376608_x5   ........................................................................accggguggaaacuagAagu..................	1
+seq_377589_x2   ........................................................................accggguggaaacCagcagu..................	1
+seq_378160_x1   ........................................................................accggguggaaacuGgcagu..................	1
+seq_376197_x7   ........................................................................accggguggaaaUuagcagu..................	1
+seq_377007_x3   ........................................................................accgAguggaaacuagcagu..................	1
+seq_378247_x1   ........................................................................accggguggaaacuagcaAu..................	1
+seq_377343_x2   ........................................................................accggguAgaaacuagcagu..................	1
+seq_369980_x50  ........................................................................accCgguggaaacuagcagu..................	1
+seq_377859_x1   ........................................................................accAgguggaaacuagcagu..................	1
+seq_377999_x1   ........................................................................accggguggaaGcuagcagu..................	1
+seq_377373_x2   ........................................................................accgggugAaaacuagcagu..................	1
+seq_377142_x3   ........................................................................acUggguggaaacuagcagu..................	1
+seq_377064_x3   ........................................................................accggguggaaacuagNagu..................	1
+seq_368470_x69  ........................................................................accgggGggaaacuagcagu..................	1
+seq_378073_x1   ........................................................................accggguggaaacuUgcagu..................	1
+seq_376623_x5   ........................................................................accggguggaaaNuagcagu..................	1
+seq_374672_x15  ........................................................................accgggAggaaacuagcagu..................	1
+seq_377457_x2   ........................................................................accgggugUaaacuagcagu..................	1
+seq_378191_x1   ........................................................................aGcggguggaaacuagcagu..................	1
+seq_329405_x990 ........................................................................accggguggaaacuagcagu..................	0
+seq_375926_x8   ........................................................................accggguggGaacuagcagu..................	1
+seq_374908_x13  ........................................................................accggguggaaacuagcagC..................	1
+seq_377307_x3   ........................................................................accggguggaaaGuagcagu..................	1
+seq_376987_x4   ........................................................................acAggguggaaacuagcagu..................	1
+seq_377767_x1   ........................................................................accggguggaUacuagcagu..................	1
+seq_378314_x1   ........................................................................accggguggaaacAagcagu..................	1
+seq_377983_x1   ........................................................................accggNuggaaacuagcagu..................	1
+seq_376871_x4   ........................................................................accggguggaaacuagcUgu..................	1
+seq_377583_x2   ........................................................................aUcggguggaaacuagcagu..................	1
+seq_376867_x4   ........................................................................accggguCgaaacuagcagu..................	1
+seq_376479_x6   ........................................................................aAcggguggaaacuagcagu..................	1
+seq_378163_x1   ........................................................................accUgguggaaacuagcagu..................	1
+seq_377010_x3   ........................................................................accggguggaaacuaCcagu..................	1
+seq_377268_x3   ........................................................................accgCguggaaacuagcagu..................	1
+seq_375730_x9   ........................................................................accggguggaaacuagcagA..................	1
+seq_375802_x9   ........................................................................accggguggaaacuaAcagu..................	1
+seq_377988_x1   ........................................................................accggguggaaacuagcaNu..................	1
+seq_376787_x4   ........................................................................accggguggUaacuagcagu..................	1
+seq_377415_x2   ........................................................................accggguggaaacuCgcagu..................	1
+seq_370268_x46  ........................................................................accgggCggaaacuagcagu..................	1
+seq_377889_x1   ........................................................................acGggguggaaacuagcagu..................	1
+seq_374934_x13  ........................................................................accggguggaaaAuagcagu..................	1
+seq_377519_x2   ........................................................................aNcggguggaaacuagcagu..................	1
+seq_377881_x1   ........................................................................accggguggaaacGagcagu..................	1
+seq_377381_x2   ........................................................................accggguggaaacuagcaUu..................	1
+seq_377097_x3   ........................................................................Uccggguggaaacuagcagu..................	1
+seq_377797_x1   ........................................................................accggguggaaacuagGagu..................	1
+seq_376887_x4   ........................................................................accggUuggaaacuagcagu..................	1
+seq_378150_x1   ........................................................................accggguggaaCcuagcagu..................	1
+seq_378251_x1   ........................................................................accggguggaaacuagUagu..................	1
+seq_376708_x5   ........................................................................accggguggaaacuagcaCu..................	1
+seq_377811_x1   ........................................................................Cccggguggaaacuagcagu..................	1
+seq_376731_x4   ........................................................................accggguggaaacuaUcagu..................	1
+seq_375829_x9   ........................................................................accggguggaaacuagcagG..................	1
+seq_374535_x16  ........................................................................accggguggaaacuagcCgu..................	1
+seq_377685_x2   ........................................................................accggguggaGacuagcagu..................	1
+seq_372017_x32  ........................................................................accggguggaaacuagcaguU.................	1
+seq_377768_x1   ........................................................................accggguggaaacuagcagug.................	0
+seq_373036_x24  ........................................................................accggguggaaacuagcaguA.................	1
+seq_376927_x4   .........................................................................Ucggguggaaacuagcagu..................	1
+seq_376014_x8   .........................................................................ccggguggaaacuagcagu..................	0
+seq_378116_x1   .........................................................................Acggguggaaacuagcagu..................	1
+seq_378329_x1   .........................................................................ccggguggaaacuagcaguggcu..............	0
+seq_376903_x4   ..........................................................................cggguggaaacuagcagu..................	0
+seq_378178_x1   ..........................................................................cggguggaaacuagAagu..................	1
+seq_377996_x1   ............................................................................................ggcuAgaucuuuuccacu	1
+
+
+
+>chrII:11534525-11540624_12
+score total		          -0.2
+score for star read(s)	          -1.3
+score for read counts	             0
+score for mfe		           0.2
+score for randfold	          -2.2
+score for cons. seed	             3
+miRNA with same seed	    cbr-miR-35
+total read count	        119546
+mature read count	        119545
+loop read count		             1
+star read count		             0
+exp             ffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSSSSffffffffffff
+pri_seq         gcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaa
+pri_struct      ..................((((((((((.((((....((((.(..(((((..(.....)..))))...)..)))))....))))...)).))))))))............	#MM
+seq_378182_x1   ................Gguaucaccgggugaacacuugcagu....................................................................	1
+seq_378210_x1   ..................uaucaccgggugaacacuugca......................................................................	0
+seq_377082_x3   ..................Aaucaccgggugaacacuugcag.....................................................................	1
+seq_376915_x4   ..................uaucaccgggugaacacuugcag.....................................................................	0
+seq_378060_x1   ..................uaucaccgggugaacacuugcagu....................................................................	0
+seq_367062_x87  ..................Aaucaccgggugaacacuugcagu....................................................................	1
+seq_377289_x3   ...................aucaccgggugaacacuugca......................................................................	0
+seq_377605_x2   ...................Cucaccgggugaacacuugca......................................................................	1
+seq_378046_x1   ...................aucaccgggugaacacGugca......................................................................	1
+seq_378288_x1   ...................aucaccgggGgaacacuugcag.....................................................................	1
+seq_377997_x1   ...................aucaccgggugaaUacuugcag.....................................................................	1
+seq_373177_x23  ...................Uucaccgggugaacacuugcag.....................................................................	1
+seq_377844_x1   ...................aucaccgggugaacacuugcaU.....................................................................	1
+seq_373668_x20  ...................aucaccgggugaacacuugcag.....................................................................	0
+seq_377762_x1   ...................aucaAcgggugaacacuugcag.....................................................................	1
+seq_377747_x1   ...................aucaccgggugaacaAuugcag.....................................................................	1
+seq_376775_x4   ...................aucaccgggCgaacacuugcagu....................................................................	1
+seq_377639_x2   ...................aucaccCggugaacacuugcagu....................................................................	1
+seq_377521_x2   ...................aucaccgggugaacacuugAagu....................................................................	1
+seq_377783_x1   ...................aucaccggCugaacacuugcagu....................................................................	1
+seq_368805_x66  ...................Cucaccgggugaacacuugcagu....................................................................	1
+seq_377353_x2   ...................aucaccgggugaacacuugcagC....................................................................	1
+seq_378177_x1   ...................aucaccgggugaacacuGgcagu....................................................................	1
+seq_378165_x1   ...................aucaccgggugaNcacuugcagu....................................................................	1
+seq_377109_x3   ...................aucaccgggugaacacuugcaUu....................................................................	1
+seq_377917_x1   ...................Uucaccgggugaacacuugcagu....................................................................	1
+seq_376831_x4   ...................aucaccgggAgaacacuugcagu....................................................................	1
+seq_377800_x1   ...................aucaccggUugaacacuugcagu....................................................................	1
+seq_376839_x4   ...................aucaccgggGgaacacuugcagu....................................................................	1
+seq_377963_x1   ...................auGaccgggugaacacuugcagu....................................................................	1
+seq_378067_x1   ...................aucaccggAugaacacuugcagu....................................................................	1
+seq_358376_x178 ...................aucaccgggugaacacuugcagu....................................................................	0
+seq_377709_x2   ...................aucaccgggugaacacuugcCgu....................................................................	1
+seq_377782_x1   ...................aucaccgggugaacacuugcUgu....................................................................	1
+seq_377958_x1   ...................aucaccgCgugaacacuugcagu....................................................................	1
+seq_378230_x1   ...................aucaccgggugaacacuugcGgu....................................................................	1
+seq_377855_x1   ...................aucaccgggugaacacuugcagA....................................................................	1
+seq_378037_x1   ...................aucaccgAgugaacacuugcagu....................................................................	1
+seq_378265_x1   ...................aucaccgggugaacCcuugcagu....................................................................	1
+seq_377954_x1   ...................aucaccgggugaacacuCgcagu....................................................................	1
+seq_377772_x1   ...................aucaAcgggugaacacuugcagu....................................................................	1
+seq_377527_x2   ...................aucaccgggugaacacuugcaguA...................................................................	1
+seq_377133_x3   ...................aucaccgggugaacacuugcaguU...................................................................	1
+seq_378317_x1   ....................uAaccgggugaacacuug........................................................................	1
+seq_378095_x1   ....................Acaccgggugaacacuug........................................................................	1
+seq_373608_x20  ....................ucaccgggugaacacuug........................................................................	0
+seq_377971_x1   ....................ucaAcgggugaacacuug........................................................................	1
+seq_378106_x1   ....................ucaccgggugaaAacuug........................................................................	1
+seq_377951_x1   ....................ucaccgggGgaacacuug........................................................................	1
+seq_378005_x1   ....................ucaccgggugaCcacuug........................................................................	1
+seq_377918_x1   ....................ucaccgggugaacacuuU........................................................................	1
+seq_378295_x1   ....................ucaccgUgugaacacuug........................................................................	1
+seq_377445_x2   ....................ucaccgggugaaGacuug........................................................................	1
+seq_377897_x1   ....................ucaccgggugaaGacuugc.......................................................................	1
+seq_378284_x1   ....................ucaccgggugaacaGuugc.......................................................................	1
+seq_373012_x24  ....................ucaccgggugaacacuugc.......................................................................	0
+seq_377615_x2   ....................uAaccgggugaacacuugca......................................................................	1
+seq_377553_x2   ....................uUaccgggugaacacuugca......................................................................	1
+seq_378074_x1   ....................ucaccgggugaaNacuugca......................................................................	1
+seq_376735_x4   ....................ucaccgggugaacacuuUca......................................................................	1
+seq_375220_x11  ....................ucaccgggCgaacacuugca......................................................................	1
+seq_378034_x1   ....................ucaccgggugCacacuugca......................................................................	1
+seq_376568_x5   ....................ucaccggCugaacacuugca......................................................................	1
+seq_376461_x6   ....................ucaccgAgugaacacuugca......................................................................	1
+seq_377473_x2   ....................ucaccgggugaacacGugca......................................................................	1
+seq_377757_x1   ....................ucaccggguCaacacuugca......................................................................	1
+seq_372988_x24  ....................ucacAgggugaacacuugca......................................................................	1
+seq_378205_x1   ....................ucaccgggugaacacuugUa......................................................................	1
+seq_376943_x4   ....................ucaccgggugaacaAuugca......................................................................	1
+seq_377253_x3   ....................ucaccgggugaacUcuugca......................................................................	1
+seq_377555_x2   ....................ucaUcgggugaacacuugca......................................................................	1
+seq_377891_x1   ....................ucaccAggugaacacuugca......................................................................	1
+seq_378327_x1   ....................ucaccgggugaacacuugAa......................................................................	1
+seq_327151_x1237....................ucaccgggugaacacuugca......................................................................	0
+seq_378238_x1   ....................ucaccgggugaacacuCgca......................................................................	1
+seq_377912_x1   ....................uNaccgggugaacacuugca......................................................................	1
+seq_376443_x6   ....................ucaccgggugaaUacuugca......................................................................	1
+seq_375385_x10  ....................ucaccgggugaacacuGgca......................................................................	1
+seq_377802_x1   ....................ucaccgggugaacacCugca......................................................................	1
+seq_376663_x5   ....................ucaccgggugaacacuugcU......................................................................	1
+seq_376783_x4   ....................ucaccgggugaacacuuAca......................................................................	1
+seq_376795_x4   ....................ucGccgggugaacacuugca......................................................................	1
+seq_377190_x3   ....................ucaccgggugaacacuAgca......................................................................	1
+seq_377335_x2   ....................ucaAcgggugaacacuugca......................................................................	1
+seq_377541_x2   ....................ucaccggAugaacacuugca......................................................................	1
+seq_377154_x3   ....................ucaccggguUaacacuugca......................................................................	1
+seq_378270_x1   ....................Acaccgggugaacacuugca......................................................................	1
+seq_376653_x5   ....................ucaccUggugaacacuugca......................................................................	1
+seq_376543_x5   ....................uGaccgggugaacacuugca......................................................................	1
+seq_376751_x4   ....................ucaccggUugaacacuugca......................................................................	1
+seq_378299_x1   ....................ucaccgggugaacGcuugca......................................................................	1
+seq_376078_x8   ....................ucaccgggGgaacacuugca......................................................................	1
+seq_377830_x1   ....................ucaccgggugaCcacuugca......................................................................	1
+seq_377397_x2   ....................ucaccgUgugaacacuugca......................................................................	1
+seq_377557_x2   ....................ucacUgggugaacacuugca......................................................................	1
+seq_377850_x1   ....................ucaccggNugaacacuugca......................................................................	1
+seq_377405_x2   ....................ucaccgggugaaGacuugca......................................................................	1
+seq_378080_x1   ....................ucaccgggugGacacuugca......................................................................	1
+seq_375883_x9   ....................ucaccgCgugaacacuugca......................................................................	1
+seq_377821_x1   ....................ucaccgggugaacCcuugca......................................................................	1
+seq_374729_x14  ....................ucaccgggugaaAacuugca......................................................................	1
+seq_377667_x2   ....................ucaGcgggugaacacuugca......................................................................	1
+seq_377565_x2   ....................ucaccgggugaacacuugcG......................................................................	1
+seq_377829_x1   ....................ucaccgggugaUcacuugca......................................................................	1
+seq_373975_x18  ....................ucaccgggAgaacacuugca......................................................................	1
+seq_377148_x3   ....................ucaccgggugaacacuuCca......................................................................	1
+seq_378321_x1   ....................ucaccCggugaacacuugca......................................................................	1
+seq_377824_x1   ....................Gcaccgggugaacacuugca......................................................................	1
+seq_377046_x3   ....................ucaccgggugaacaGuugca......................................................................	1
+seq_377838_x1   ....................ucaccgggugaacacuuNca......................................................................	1
+seq_377355_x2   ....................ucaccgggugaacacuugGag.....................................................................	1
+seq_376603_x5   ....................Acaccgggugaacacuugcag.....................................................................	1
+seq_375415_x10  ....................ucaccgggugaacacuugAag.....................................................................	1
+seq_376573_x5   ....................ucaccgggugaaGacuugcag.....................................................................	1
+seq_376425_x6   ....................ucaccgggugaacacuAgcag.....................................................................	1
+seq_376176_x7   ....................ucaccgggugaacacuugNag.....................................................................	1
+seq_378132_x1   ....................ucacGgggugaacacuugcag.....................................................................	1
+seq_376588_x5   ....................ucaUcgggugaacacuugcag.....................................................................	1
+seq_376274_x7   ....................ucaccggguAaacacuugcag.....................................................................	1
+seq_376070_x8   ....................ucaccgggugaacacuugcaC.....................................................................	1
+seq_375308_x11  ....................ucaccgggugaacacCugcag.....................................................................	1
+seq_376126_x8   ....................ucaccUggugaacacuugcag.....................................................................	1
+seq_378103_x1   ....................ucNccgggugaacacuugcag.....................................................................	1
+seq_376593_x5   ....................uGaccgggugaacacuugcag.....................................................................	1
+seq_373937_x19  ....................ucaccgggugaacacuuUcag.....................................................................	1
+seq_376204_x7   ....................ucaccgggugaacacuuCcag.....................................................................	1
+seq_377435_x2   ....................ucaccggguCaacacuugcag.....................................................................	1
+seq_377779_x1   ....................ucaccgggugaacaGuugcag.....................................................................	1
+seq_377788_x1   ....................ucaccgggugaacacuNgcag.....................................................................	1
+seq_377295_x3   ....................ucaccgggugaacacuCgcag.....................................................................	1
+seq_376521_x6   ....................uAaccgggugaacacuugcag.....................................................................	1
+seq_375766_x9   ....................ucaccgggugaaUacuugcag.....................................................................	1
+seq_377265_x3   ....................uUaccgggugaacacuugcag.....................................................................	1
+seq_376835_x4   ....................ucaccggAugaacacuugcag.....................................................................	1
+seq_377729_x2   ....................ucaccgggugaUcacuugcag.....................................................................	1
+seq_296962_x3796....................ucaccgggugaacacuugcag.....................................................................	0
+seq_369371_x60  ....................ucaccgggGgaacacuugcag.....................................................................	1
+seq_376643_x5   ....................ucaccgggugCacacuugcag.....................................................................	1
+seq_376563_x5   ....................ucaccgUgugaacacuugcag.....................................................................	1
+seq_377437_x2   ....................ucaGcgggugaacacuugcag.....................................................................	1
+seq_376253_x7   ....................ucaccggguUaacacuugcag.....................................................................	1
+seq_375793_x9   ....................ucaccgggugaacacuugcCg.....................................................................	1
+seq_367812_x78  ....................ucacAgggugaacacuugcag.....................................................................	1
+seq_376923_x4   ....................ucaccgggugaacacAugcag.....................................................................	1
+seq_376347_x6   ....................ucaccgAgugaacacuugcag.....................................................................	1
+seq_376190_x7   ....................ucacUgggugaacacuugcag.....................................................................	1
+seq_370787_x41  ....................ucaccgggCgaacacuugcag.....................................................................	1
+seq_377025_x3   ....................ucUccgggugaacacuugcag.....................................................................	1
+seq_376983_x4   ....................ucCccgggugaacacuugcag.....................................................................	1
+seq_378141_x1   ....................ucaccggNugaacacuugcag.....................................................................	1
+seq_377067_x3   ....................ucaccgggugaCcacuugcag.....................................................................	1
+seq_376155_x7   ....................Ccaccgggugaacacuugcag.....................................................................	1
+seq_374771_x14  ....................ucaccgggugaacacuGgcag.....................................................................	1
+seq_377786_x1   ....................ucaccgggugaacacuugcGg.....................................................................	1
+seq_377515_x2   ....................ucaccgggugaacCcuugcag.....................................................................	1
+seq_375184_x12  ....................ucaccgggugaacacuugcUg.....................................................................	1
+seq_375958_x8   ....................ucaccgggugaacacuugUag.....................................................................	1
+seq_372173_x31  ....................ucaccgggugaaNacuugcag.....................................................................	1
+seq_372890_x25  ....................ucaccgggugaacaAuugcag.....................................................................	1
+seq_372737_x26  ....................ucaccgCgugaacacuugcag.....................................................................	1
+seq_371788_x33  ....................ucaccgggAgaacacuugcag.....................................................................	1
+seq_376931_x4   ....................ucaccgggugGacacuugcag.....................................................................	1
+seq_376389_x6   ....................ucaccAggugaacacuugcag.....................................................................	1
+seq_374375_x16  ....................ucaccgggugaacacuugcaU.....................................................................	1
+seq_377333_x2   ....................uNaccgggugaacacuugcag.....................................................................	1
+seq_377723_x2   ....................ucGccgggugaacacuugcag.....................................................................	1
+seq_376807_x4   ....................ucaccgggugUacacuugcag.....................................................................	1
+seq_377547_x2   ....................ucaccgggugaacacuugcaA.....................................................................	1
+seq_375535_x10  ....................ucaccgggugaacUcuugcag.....................................................................	1
+seq_376911_x4   ....................ucaccggUugaacacuugcag.....................................................................	1
+seq_373246_x22  ....................ucaccgggugaaAacuugcag.....................................................................	1
+seq_376668_x5   ....................ucaccgggugaacaUuugcag.....................................................................	1
+seq_378036_x1   ....................ucaccCggugaacacuugcag.....................................................................	1
+seq_377651_x2   ....................ucaccgggugaGcacuugcag.....................................................................	1
+seq_378309_x1   ....................ucaccgggugaacacuuAcag.....................................................................	1
+seq_375990_x8   ....................ucaccggCugaacacuugcag.....................................................................	1
+seq_375625_x10  ....................ucaAcgggugaacacuugcag.....................................................................	1
+seq_376162_x7   ....................Gcaccgggugaacacuugcag.....................................................................	1
+seq_376583_x5   ....................ucaccgggugaacacGugcag.....................................................................	1
+seq_361001_x150 ....................ucaccgggugaacacuuCcagu....................................................................	1
+seq_369064_x62  ....................ucaccgggugaacacuugcaAu....................................................................	1
+seq_366051_x97  ....................ucaccgggugaacaUuugcagu....................................................................	1
+seq_359745_x162 ....................ucaccgggugGacacuugcagu....................................................................	1
+seq_335879_x674 ....................ucaccgCgugaacacuugcagu....................................................................	1
+seq_352711_x226 ....................ucaccgggugaaGacuugcagu....................................................................	1
+seq_344621_x340 ....................ucaAcgggugaacacuugcagu....................................................................	1
+seq_332159_x841 ....................ucaccgggAgaacacuugcagu....................................................................	1
+seq_351534_x242 ....................ucaccgggugaacacuugcagG....................................................................	1
+seq_341618_x427 ....................ucaccgggugaacaAuugcagu....................................................................	1
+seq_367149_x86  ....................ucaGcgggugaacacuugcagu....................................................................	1
+seq_371222_x38  ....................ucaccggNugaacacuugcagu....................................................................	1
+seq_335193_x686 ....................ucaccgggugaaAacuugcagu....................................................................	1
+seq_363877_x122 ....................ucaccgggugaacacuNgcagu....................................................................	1
+seq_149538_x90904....................ucaccgggugaacacuugcagu....................................................................	0
+seq_360693_x155 ....................ucaccgggugaacacuugNagu....................................................................	1
+seq_363491_x129 ....................ucaccgggugaacacuuAcagu....................................................................	1
+seq_356323_x196 ....................ucaccgggugaaUacuugcagu....................................................................	1
+seq_355311_x207 ....................ucaccggCugaacacuugcagu....................................................................	1
+seq_365443_x103 ....................uGaccgggugaacacuugcagu....................................................................	1
+seq_365022_x107 ....................uUaccgggugaacacuugcagu....................................................................	1
+seq_375694_x9   ....................Ncaccgggugaacacuugcagu....................................................................	1
+seq_356905_x190 ....................ucaccUggugaacacuugcagu....................................................................	1
+seq_375974_x8   ....................ucUccgggugaacacuugcagu....................................................................	1
+seq_363749_x128 ....................ucaUcgggugaacacuugcagu....................................................................	1
+seq_371028_x39  ....................ucaccgggugaacaGuugcagu....................................................................	1
+seq_375545_x10  ....................ucacNgggugaacacuugcagu....................................................................	1
+seq_354892_x210 ....................ucaccgggugCacacuugcagu....................................................................	1
+seq_362156_x140 ....................ucaccgggugaacacuugcaCu....................................................................	1
+seq_364468_x114 ....................ucaccgUgugaacacuugcagu....................................................................	1
+seq_366524_x92  ....................ucaccggguAaacacuugcagu....................................................................	1
+seq_354469_x212 ....................ucaccggguUaacacuugcagu....................................................................	1
+seq_331306_x853 ....................ucaccgggCgaacacuugcagu....................................................................	1
+seq_359076_x170 ....................ucaccgggugaacacuCgcagu....................................................................	1
+seq_365129_x106 ....................ucacUgggugaacacuugcagu....................................................................	1
+seq_373223_x23  ....................ucacGgggugaacacuugcagu....................................................................	1
+seq_371260_x37  ....................ucaccgggugaacacuugGagu....................................................................	1
+seq_358731_x174 ....................ucaccgggugaacacuAgcagu....................................................................	1
+seq_342045_x391 ....................ucaccgggugaacacuugcCgu....................................................................	1
+seq_362296_x138 ....................ucaccgggugaacacuugcaUu....................................................................	1
+seq_365339_x104 ....................ucaccgggugaacacuugAagu....................................................................	1
+seq_372468_x28  ....................ucaccgggugaUcacuugcagu....................................................................	1
+seq_372496_x27  ....................ucGccgggugaacacuugcagu....................................................................	1
+seq_375565_x10  ....................ucaNcgggugaacacuugcagu....................................................................	1
+seq_369188_x61  ....................ucaccgggugaCcacuugcagu....................................................................	1
+seq_357284_x187 ....................ucaccgggugaacacuugcagA....................................................................	1
+seq_367490_x83  ....................uNaccgggugaacacuugcagu....................................................................	1
+seq_349174_x270 ....................ucaccgggugaacacuugcagC....................................................................	1
+seq_368261_x70  ....................ucaccCggugaacacuugcagu....................................................................	1
+seq_363098_x131 ....................ucaccgggugaacacGugcagu....................................................................	1
+seq_377118_x3   ....................ucaccNggugaacacuugcagu....................................................................	1
+seq_360848_x153 ....................ucaccgAgugaacacuugcagu....................................................................	1
+seq_341170_x448 ....................ucaccgggugaacacuuUcagu....................................................................	1
+seq_361297_x146 ....................ucaccAggugaacacuugcagu....................................................................	1
+cel-miR-37      ....................ucaccgggugaacacuugcagu....................................................................	0
+seq_366431_x93  ....................Ccaccgggugaacacuugcagu....................................................................	1
+seq_376287_x6   ....................ucNccgggugaacacuugcagu....................................................................	1
+seq_345299_x327 ....................ucaccgggugaacacuugcUgu....................................................................	1
+seq_354041_x214 ....................uAaccgggugaacacuugcagu....................................................................	1
+seq_363999_x122 ....................ucaccggguCaacacuugcagu....................................................................	1
+seq_319013_x1597....................ucacAgggugaacacuugcagu....................................................................	1
+seq_369126_x62  ....................ucaccgggugaacCcuugcagu....................................................................	1
+seq_340154_x508 ....................ucaccgggugaacacuGgcagu....................................................................	1
+seq_366337_x94  ....................ucaccggUugaacacuugcagu....................................................................	1
+seq_372789_x26  ....................ucaccgggugaGcacuugcagu....................................................................	1
+seq_364238_x115 ....................Gcaccgggugaacacuugcagu....................................................................	1
+seq_377843_x1   ....................ucaccgggugaacacuuNcagu....................................................................	1
+seq_365648_x102 ....................ucaccgggugUacacuugcagu....................................................................	1
+seq_371480_x36  ....................ucCccgggugaacacuugcagu....................................................................	1
+seq_362569_x133 ....................ucaccgggugaacacuugUagu....................................................................	1
+seq_362434_x135 ....................ucaccgggugaacUcuugcagu....................................................................	1
+seq_368190_x71  ....................Acaccgggugaacacuugcagu....................................................................	1
+seq_330395_x911 ....................ucaccgggugaaNacuugcagu....................................................................	1
+seq_370868_x40  ....................ucaccgggugaacGcuugcagu....................................................................	1
+seq_323285_x1320....................ucaccgggGgaacacuugcagu....................................................................	1
+seq_358020_x178 ....................ucaccggAugaacacuugcagu....................................................................	1
+seq_375330_x11  ....................ucaccgggNgaacacuugcagu....................................................................	1
+seq_369665_x55  ....................ucaccgggugaacacAugcagu....................................................................	1
+seq_357471_x183 ....................ucaccgggugaacacCugcagu....................................................................	1
+seq_368539_x67  ....................ucaccgggugaacacuugcGgu....................................................................	1
+seq_377977_x1   ....................ucaccgggugaacacuugcagGg...................................................................	1
+seq_377822_x1   ....................ucaAcgggugaacacuugcagug...................................................................	1
+seq_377949_x1   ....................ucaccgggugaacacGugcagug...................................................................	1
+seq_373861_x19  ....................ucaccgggugaacacuugcagug...................................................................	0
+seq_373378_x22  ....................ucaccgggugaacacuugcaguC...................................................................	1
+seq_325900_x1251....................ucaccgggugaacacuugcaguA...................................................................	1
+seq_377687_x2   ....................ucaccgggugaacacuugcUgug...................................................................	1
+seq_300758_x2851....................ucaccgggugaacacuugcaguU...................................................................	1
+seq_378118_x1   ....................uAaccgggugaacacuugcagug...................................................................	1
+seq_377256_x3   ....................ucaccgggugaacacuugcagugA..................................................................	1
+seq_377858_x1   ....................ucaccgggugaacacuugcaguCg..................................................................	1
+seq_378081_x1   ....................ucaccgggugaacacuugcaguAg..................................................................	1
+seq_376855_x4   ....................ucaccgggugaacacuugcagugC..................................................................	1
+seq_378276_x1   ....................ucaccgggugaacacuugcaguUg..................................................................	1
+seq_377629_x2   ....................ucaccgggugaacacuugcagugg..................................................................	0
+seq_378008_x1   ....................uUaccgggugaacacuugcaguggu.................................................................	1
+seq_378261_x1   ....................ucaccgggugaacacuugcaguggu.................................................................	0
+seq_377773_x1   ....................ucaccgggugaacacuugcaguggA.................................................................	1
+seq_378246_x1   ....................ucaccgggugaacacuugcagugUu.................................................................	1
+seq_377896_x1   ....................ucaccgggugaacacuugcaguggCc................................................................	1
+seq_377447_x2   ....................ucaccgggugaacacuugcagugAuc................................................................	1
+seq_378068_x1   ....................ucaccgggugaacacuugcaguggucA...............................................................	1
+seq_377411_x2   ....................ucaccgggugaacacuugcagugguUc...............................................................	1
+seq_377899_x1   .....................caccgggugaacacuugca......................................................................	0
+seq_377943_x1   .....................caAcgggugaacacuugcag.....................................................................	1
+seq_373131_x23  .....................caccgggugaacacuugcag.....................................................................	0
+seq_377857_x1   .....................caccgggugaacaUuugcag.....................................................................	1
+seq_377921_x1   .....................cGccgggugaacacuugcag.....................................................................	1
+seq_376755_x4   .....................Uaccgggugaacacuugcagu....................................................................	1
+seq_378164_x1   .....................caccgggugaacaAuugcagu....................................................................	1
+seq_376419_x6   .....................caccgggAgaacacuugcagu....................................................................	1
+seq_377715_x2   .....................caccgggugaacacuCgcagu....................................................................	1
+seq_378030_x1   .....................caccgggugaacacuGgcagu....................................................................	1
+seq_378016_x1   .....................caccggguCaacacuugcagu....................................................................	1
+seq_377022_x3   .....................caccgggugaacacuugcagA....................................................................	1
+seq_378214_x1   .....................caccgggugaCcacuugcagu....................................................................	1
+seq_377835_x1   .....................caccgggugaacacNugcagu....................................................................	1
+seq_378161_x1   .....................cacGgggugaacacuugcagu....................................................................	1
+seq_374011_x18  .....................caccgggGgaacacuugcagu....................................................................	1
+seq_377900_x1   .....................cNccgggugaacacuugcagu....................................................................	1
+seq_376260_x7   .....................caccgggugaaAacuugcagu....................................................................	1
+seq_348053_x285 .....................caccgggugaacacuugcagu....................................................................	0
+seq_377795_x1   .....................caccAggugaacacuugcagu....................................................................	1
+seq_377649_x2   .....................caccgggugaacacuuAcagu....................................................................	1
+seq_377928_x1   .....................caccgggugaacacGugcagu....................................................................	1
+seq_378111_x1   .....................caccgggugaacacuAgcagu....................................................................	1
+seq_377202_x3   .....................caccgggugaacacuugcUgu....................................................................	1
+seq_377904_x1   .....................cGccgggugaacacuugcagu....................................................................	1
+seq_378018_x1   .....................caccgggugaacNcuugcagu....................................................................	1
+seq_378263_x1   .....................caccgggugaaGacuugcagu....................................................................	1
+seq_377990_x1   .....................cCccgggugaacacuugcagu....................................................................	1
+seq_376553_x5   .....................caccgggCgaacacuugcagu....................................................................	1
+seq_376688_x5   .....................caccgggugaacacuugcagC....................................................................	1
+seq_377461_x2   .....................caccgggugaacacuuCcagu....................................................................	1
+seq_377804_x1   .....................caccggAugaacacuugcagu....................................................................	1
+seq_376086_x8   .....................caAcgggugaacacuugcagu....................................................................	1
+seq_353384_x221 .....................caccgggugaacacuugcaguU...................................................................	1
+seq_378003_x1   .....................caccgggugaacacuugcagCg...................................................................	1
+seq_374439_x16  .....................caccgggugaacacuugcagug...................................................................	0
+seq_361874_x141 .....................caccgggugaacacuugcaguA...................................................................	1
+seq_377286_x3   .....................caccgggugaacacuugcaguC...................................................................	1
+seq_378195_x1   .....................caccgggugaacacuugcagugU..................................................................	1
+seq_378303_x1   .....................caccgggugaacacuugcagugC..................................................................	1
+seq_378250_x1   .....................caccgggugaacacuugcaguUg..................................................................	1
+seq_378188_x1   ......................accgggCgaacacuugca......................................................................	1
+seq_378220_x1   ......................accgggugaacacAugca......................................................................	1
+seq_376094_x8   ......................accgggugaacacuugca......................................................................	0
+seq_370405_x44  ......................accgggugaacacuugcag.....................................................................	0
+seq_377805_x1   ......................accCggugaacacuugcag.....................................................................	1
+seq_377998_x1   ......................accggUugaacacuugcag.....................................................................	1
+seq_378298_x1   ......................accgggugaacacuugcCg.....................................................................	1
+seq_378052_x1   ......................aGcgggugaacacuugcag.....................................................................	1
+seq_377965_x1   ......................accgggCgaacacuugcag.....................................................................	1
+seq_378289_x1   ......................accgggugaacacCugcag.....................................................................	1
+seq_378102_x1   ......................accgggAgaacacuugcag.....................................................................	1
+seq_377184_x3   ......................accgggugaacacuugcagG....................................................................	1
+seq_378152_x1   ......................accgggugaacaUuugcagu....................................................................	1
+seq_374359_x16  ......................accgggGgaacacuugcagu....................................................................	1
+seq_376473_x6   ......................accgCgugaacacuugcagu....................................................................	1
+seq_377986_x1   ......................accgggugaacacuugGagu....................................................................	1
+seq_378237_x1   ......................accgggugCacacuugcagu....................................................................	1
+seq_377721_x2   ......................accgggugaacacuugUagu....................................................................	1
+seq_375124_x12  ......................accCggugaacacuugcagu....................................................................	1
+seq_373485_x21  ......................accgggugaacacuuUcagu....................................................................	1
+seq_375721_x9   ......................accgggugaaAacuugcagu....................................................................	1
+seq_377713_x2   ......................aAcgggugaacacuugcagu....................................................................	1
+seq_376951_x4   ......................acAgggugaacacuugcagu....................................................................	1
+seq_377609_x2   ......................accgggugaacacuAgcagu....................................................................	1
+seq_377930_x1   ......................accggAugaacacuugcagu....................................................................	1
+seq_375685_x9   ......................accgggugaacacuugcagC....................................................................	1
+seq_377847_x1   ......................accgggugaaUacuugcagu....................................................................	1
+seq_377661_x2   ......................accgggugaacacuGgcagu....................................................................	1
+seq_333757_x746 ......................accgggugaacacuugcagu....................................................................	0
+seq_378076_x1   ......................accgggugaacacCugcagu....................................................................	1
+seq_378101_x1   ......................accgggugaaGacuugcagu....................................................................	1
+seq_378307_x1   ......................accggCugaacacuugcagu....................................................................	1
+seq_373108_x23  ......................accgggugaacacuugcCgu....................................................................	1
+seq_376847_x4   ......................accggguCaacacuugcagu....................................................................	1
+seq_377789_x1   ......................accgggugaacacuugcaUu....................................................................	1
+seq_378184_x1   ......................accgggugaacacuugcUgu....................................................................	1
+seq_377441_x2   ......................accAggugaacacuugcagu....................................................................	1
+seq_377169_x3   ......................accgggugaacaAuugcagu....................................................................	1
+seq_377671_x2   ......................accggguAaacacuugcagu....................................................................	1
+seq_377172_x3   ......................accgAgugaacacuugcagu....................................................................	1
+seq_375982_x8   ......................accgggugaacacuugcagA....................................................................	1
+seq_376341_x6   ......................accgggugaacacuugAagu....................................................................	1
+seq_375148_x12  ......................accgggAgaacacuugcagu....................................................................	1
+seq_377973_x1   ......................Cccgggugaacacuugcagu....................................................................	1
+seq_378156_x1   ......................accgggugaacGcuugcagu....................................................................	1
+seq_377549_x2   ......................accgUgugaacacuugcagu....................................................................	1
+seq_376598_x5   ......................accgggugaacacuugcaCu....................................................................	1
+seq_377593_x2   ......................aGcgggugaacacuugcagu....................................................................	1
+seq_377322_x3   ......................acUgggugaacacuugcagu....................................................................	1
+seq_376823_x4   ......................accgggugaacCcuugcagu....................................................................	1
+seq_378201_x1   ......................aUcgggugaacacuugcagu....................................................................	1
+seq_377160_x3   ......................accggguUaacacuugcagu....................................................................	1
+seq_378002_x1   ......................accgggugaacacuuAcagu....................................................................	1
+seq_377226_x3   ......................accgggugaacacuuCcagu....................................................................	1
+seq_377393_x2   ......................accgggugaacacGugcagu....................................................................	1
+seq_376971_x4   ......................accgggugaacaNuugcagu....................................................................	1
+seq_377601_x2   ......................accggUugaacacuugcagu....................................................................	1
+seq_371920_x33  ......................accgggCgaacacuugcagu....................................................................	1
+seq_377277_x3   ......................accgggugUacacuugcagu....................................................................	1
+seq_377385_x2   ......................accUggugaacacuugcagu....................................................................	1
+seq_377611_x2   ......................accgggugGacacuugcagu....................................................................	1
+seq_378233_x1   ......................Uccgggugaacacuugcagu....................................................................	1
+seq_372411_x29  ......................accgggugaacacuugcaguU...................................................................	1
+seq_374519_x16  ......................accgggugaacacuugcaguA...................................................................	1
+seq_378026_x1   ......................accgggugaacacuugcaguUg..................................................................	1
+seq_378241_x1   .......................Ucgggugaacacuugcag.....................................................................	1
+seq_377861_x1   .......................ccgggugaacacuugcag.....................................................................	0
+seq_377301_x3   .......................ccgggugaacacuugcagu....................................................................	0
+seq_377407_x2   .......................Ucgggugaacacuugcagu....................................................................	1
+seq_377810_x1   ........................cgggCgaacacuugcagu....................................................................	1
+seq_377232_x3   ........................cgggugaacacuugcagu....................................................................	0
+seq_378012_x1   ........................................................cucugugaUccagguccugu..................................	1
+
+
+
+>chrII:11534525-11540624_11
+score total		       61011.7
+score for star read(s)	           3.9
+score for read counts	       61001.2
+score for mfe		             2
+score for randfold	           1.6
+score for cons. seed	             3
+miRNA with same seed	    cbr-miR-35
+total read count	        119663
+mature read count	        119545
+loop read count		             0
+star read count		           118
+exp             fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
+obs             fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
+pri_seq         uuaaaaucgauucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucucu
+pri_struct      ..............((((((((..((((((.((..(((((....(.(((((.((((..........)))).))))).)...)))))..)).))))))..).)))))))..	#MM
+seq_378312_x1   .............................aguguggguguccguugcggugcua........................................................	0
+seq_377115_x3   ..............................guguggguguccguugcggugcu.........................................................	0
+seq_378105_x1   ...............................uguggguguccguugcgg.............................................................	0
+seq_378286_x1   ...............................ugugggGguccguugcggu............................................................	1
+seq_378185_x1   ...............................uguggguguccguugcUgug...........................................................	1
+seq_378273_x1   ...............................uguggguguccguugcggug...........................................................	0
+seq_378154_x1   ...............................uguggguguccguugcggugc..........................................................	0
+seq_377931_x1   ...............................uguggguguccguugcggugAu.........................................................	1
+seq_374757_x14  ...............................uguggguguccguugcggugcu.........................................................	0
+seq_378090_x1   ...............................uguggguguccguugAggugcu.........................................................	1
+seq_377449_x2   ...............................ugGggguguccguugcggugcua........................................................	1
+seq_377794_x1   ...............................uguggguguccguugUggugcua........................................................	1
+seq_377787_x1   ...............................uguggguguccgGugcggugcua........................................................	1
+seq_378315_x1   ...............................uguggguguccguugcggCgcua........................................................	1
+seq_378232_x1   ...............................uguggguCuccguugcggugcua........................................................	1
+seq_367968_x76  ...............................uguggguguccguugcggugcua........................................................	0
+seq_378200_x1   ...............................uguggguguccguugcggugcGa........................................................	1
+seq_377774_x1   ...............................uguggguguccguugcggugUua........................................................	1
+seq_378038_x1   ...............................ugugggugucAguugcggugcua........................................................	1
+seq_378322_x1   ...............................uguggguguccguugcggugAua........................................................	1
+seq_378007_x1   ...............................ugAggguguccguugcggugcua........................................................	1
+seq_377837_x1   ...............................uguUgguguccguugcggugcua........................................................	1
+seq_376613_x5   ...............................uguggguguccguugcggugcuU........................................................	1
+seq_378182_x1   ..................................................................Gguaucaccgggugaacacuugcagu..................	1
+seq_378210_x1   ....................................................................uaucaccgggugaacacuugca....................	0
+seq_377082_x3   ....................................................................Aaucaccgggugaacacuugcag...................	1
+seq_376915_x4   ....................................................................uaucaccgggugaacacuugcag...................	0
+seq_378060_x1   ....................................................................uaucaccgggugaacacuugcagu..................	0
+seq_367062_x87  ....................................................................Aaucaccgggugaacacuugcagu..................	1
+seq_377289_x3   .....................................................................aucaccgggugaacacuugca....................	0
+seq_377605_x2   .....................................................................Cucaccgggugaacacuugca....................	1
+seq_378046_x1   .....................................................................aucaccgggugaacacGugca....................	1
+seq_377844_x1   .....................................................................aucaccgggugaacacuugcaU...................	1
+seq_373668_x20  .....................................................................aucaccgggugaacacuugcag...................	0
+seq_373177_x23  .....................................................................Uucaccgggugaacacuugcag...................	1
+seq_377762_x1   .....................................................................aucaAcgggugaacacuugcag...................	1
+seq_377747_x1   .....................................................................aucaccgggugaacaAuugcag...................	1
+seq_377997_x1   .....................................................................aucaccgggugaaUacuugcag...................	1
+seq_378288_x1   .....................................................................aucaccgggGgaacacuugcag...................	1
+seq_377521_x2   .....................................................................aucaccgggugaacacuugAagu..................	1
+seq_376839_x4   .....................................................................aucaccgggGgaacacuugcagu..................	1
+seq_368805_x66  .....................................................................Cucaccgggugaacacuugcagu..................	1
+seq_377917_x1   .....................................................................Uucaccgggugaacacuugcagu..................	1
+seq_378067_x1   .....................................................................aucaccggAugaacacuugcagu..................	1
+seq_378230_x1   .....................................................................aucaccgggugaacacuugcGgu..................	1
+seq_377709_x2   .....................................................................aucaccgggugaacacuugcCgu..................	1
+seq_377954_x1   .....................................................................aucaccgggugaacacuCgcagu..................	1
+seq_377772_x1   .....................................................................aucaAcgggugaacacuugcagu..................	1
+seq_377800_x1   .....................................................................aucaccggUugaacacuugcagu..................	1
+seq_377855_x1   .....................................................................aucaccgggugaacacuugcagA..................	1
+seq_376775_x4   .....................................................................aucaccgggCgaacacuugcagu..................	1
+seq_377782_x1   .....................................................................aucaccgggugaacacuugcUgu..................	1
+seq_377963_x1   .....................................................................auGaccgggugaacacuugcagu..................	1
+seq_377958_x1   .....................................................................aucaccgCgugaacacuugcagu..................	1
+seq_376831_x4   .....................................................................aucaccgggAgaacacuugcagu..................	1
+seq_378177_x1   .....................................................................aucaccgggugaacacuGgcagu..................	1
+seq_377353_x2   .....................................................................aucaccgggugaacacuugcagC..................	1
+seq_378037_x1   .....................................................................aucaccgAgugaacacuugcagu..................	1
+seq_377639_x2   .....................................................................aucaccCggugaacacuugcagu..................	1
+seq_358376_x178 .....................................................................aucaccgggugaacacuugcagu..................	0
+seq_378265_x1   .....................................................................aucaccgggugaacCcuugcagu..................	1
+seq_378165_x1   .....................................................................aucaccgggugaNcacuugcagu..................	1
+seq_377783_x1   .....................................................................aucaccggCugaacacuugcagu..................	1
+seq_377109_x3   .....................................................................aucaccgggugaacacuugcaUu..................	1
+seq_377133_x3   .....................................................................aucaccgggugaacacuugcaguU.................	1
+seq_377527_x2   .....................................................................aucaccgggugaacacuugcaguA.................	1
+seq_377971_x1   ......................................................................ucaAcgggugaacacuug......................	1
+seq_377445_x2   ......................................................................ucaccgggugaaGacuug......................	1
+seq_378317_x1   ......................................................................uAaccgggugaacacuug......................	1
+seq_378106_x1   ......................................................................ucaccgggugaaAacuug......................	1
+seq_377951_x1   ......................................................................ucaccgggGgaacacuug......................	1
+seq_378095_x1   ......................................................................Acaccgggugaacacuug......................	1
+seq_377918_x1   ......................................................................ucaccgggugaacacuuU......................	1
+seq_373608_x20  ......................................................................ucaccgggugaacacuug......................	0
+seq_378005_x1   ......................................................................ucaccgggugaCcacuug......................	1
+seq_378295_x1   ......................................................................ucaccgUgugaacacuug......................	1
+seq_377897_x1   ......................................................................ucaccgggugaaGacuugc.....................	1
+seq_373012_x24  ......................................................................ucaccgggugaacacuugc.....................	0
+seq_378284_x1   ......................................................................ucaccgggugaacaGuugc.....................	1
+seq_376461_x6   ......................................................................ucaccgAgugaacacuugca....................	1
+seq_327151_x1237......................................................................ucaccgggugaacacuugca....................	0
+seq_377912_x1   ......................................................................uNaccgggugaacacuugca....................	1
+seq_376568_x5   ......................................................................ucaccggCugaacacuugca....................	1
+seq_377829_x1   ......................................................................ucaccgggugaUcacuugca....................	1
+seq_377473_x2   ......................................................................ucaccgggugaacacGugca....................	1
+seq_376653_x5   ......................................................................ucaccUggugaacacuugca....................	1
+seq_377553_x2   ......................................................................uUaccgggugaacacuugca....................	1
+seq_377253_x3   ......................................................................ucaccgggugaacUcuugca....................	1
+seq_377557_x2   ......................................................................ucacUgggugaacacuugca....................	1
+seq_377830_x1   ......................................................................ucaccgggugaCcacuugca....................	1
+seq_372988_x24  ......................................................................ucacAgggugaacacuugca....................	1
+seq_378074_x1   ......................................................................ucaccgggugaaNacuugca....................	1
+seq_377838_x1   ......................................................................ucaccgggugaacacuuNca....................	1
+seq_377565_x2   ......................................................................ucaccgggugaacacuugcG....................	1
+seq_378270_x1   ......................................................................Acaccgggugaacacuugca....................	1
+seq_376751_x4   ......................................................................ucaccggUugaacacuugca....................	1
+seq_376735_x4   ......................................................................ucaccgggugaacacuuUca....................	1
+seq_378080_x1   ......................................................................ucaccgggugGacacuugca....................	1
+seq_377555_x2   ......................................................................ucaUcgggugaacacuugca....................	1
+seq_378238_x1   ......................................................................ucaccgggugaacacuCgca....................	1
+seq_378205_x1   ......................................................................ucaccgggugaacacuugUa....................	1
+seq_376795_x4   ......................................................................ucGccgggugaacacuugca....................	1
+seq_377824_x1   ......................................................................Gcaccgggugaacacuugca....................	1
+seq_377154_x3   ......................................................................ucaccggguUaacacuugca....................	1
+seq_377335_x2   ......................................................................ucaAcgggugaacacuugca....................	1
+seq_378299_x1   ......................................................................ucaccgggugaacGcuugca....................	1
+seq_377405_x2   ......................................................................ucaccgggugaaGacuugca....................	1
+seq_376543_x5   ......................................................................uGaccgggugaacacuugca....................	1
+seq_377850_x1   ......................................................................ucaccggNugaacacuugca....................	1
+seq_377397_x2   ......................................................................ucaccgUgugaacacuugca....................	1
+seq_376443_x6   ......................................................................ucaccgggugaaUacuugca....................	1
+seq_376078_x8   ......................................................................ucaccgggGgaacacuugca....................	1
+seq_376663_x5   ......................................................................ucaccgggugaacacuugcU....................	1
+seq_375385_x10  ......................................................................ucaccgggugaacacuGgca....................	1
+seq_376783_x4   ......................................................................ucaccgggugaacacuuAca....................	1
+seq_378034_x1   ......................................................................ucaccgggugCacacuugca....................	1
+seq_373975_x18  ......................................................................ucaccgggAgaacacuugca....................	1
+seq_377802_x1   ......................................................................ucaccgggugaacacCugca....................	1
+seq_378327_x1   ......................................................................ucaccgggugaacacuugAa....................	1
+seq_377757_x1   ......................................................................ucaccggguCaacacuugca....................	1
+seq_376943_x4   ......................................................................ucaccgggugaacaAuugca....................	1
+seq_377615_x2   ......................................................................uAaccgggugaacacuugca....................	1
+seq_375883_x9   ......................................................................ucaccgCgugaacacuugca....................	1
+seq_377821_x1   ......................................................................ucaccgggugaacCcuugca....................	1
+seq_377148_x3   ......................................................................ucaccgggugaacacuuCca....................	1
+seq_378321_x1   ......................................................................ucaccCggugaacacuugca....................	1
+seq_374729_x14  ......................................................................ucaccgggugaaAacuugca....................	1
+seq_377541_x2   ......................................................................ucaccggAugaacacuugca....................	1
+seq_377190_x3   ......................................................................ucaccgggugaacacuAgca....................	1
+seq_377667_x2   ......................................................................ucaGcgggugaacacuugca....................	1
+seq_377891_x1   ......................................................................ucaccAggugaacacuugca....................	1
+seq_377046_x3   ......................................................................ucaccgggugaacaGuugca....................	1
+seq_375220_x11  ......................................................................ucaccgggCgaacacuugca....................	1
+seq_376573_x5   ......................................................................ucaccgggugaaGacuugcag...................	1
+seq_375990_x8   ......................................................................ucaccggCugaacacuugcag...................	1
+seq_372737_x26  ......................................................................ucaccgCgugaacacuugcag...................	1
+seq_376155_x7   ......................................................................Ccaccgggugaacacuugcag...................	1
+seq_377265_x3   ......................................................................uUaccgggugaacacuugcag...................	1
+seq_376521_x6   ......................................................................uAaccgggugaacacuugcag...................	1
+seq_378103_x1   ......................................................................ucNccgggugaacacuugcag...................	1
+seq_376923_x4   ......................................................................ucaccgggugaacacAugcag...................	1
+seq_375184_x12  ......................................................................ucaccgggugaacacuugcUg...................	1
+seq_377779_x1   ......................................................................ucaccgggugaacaGuugcag...................	1
+seq_377547_x2   ......................................................................ucaccgggugaacacuugcaA...................	1
+seq_377025_x3   ......................................................................ucUccgggugaacacuugcag...................	1
+seq_377788_x1   ......................................................................ucaccgggugaacacuNgcag...................	1
+seq_373937_x19  ......................................................................ucaccgggugaacacuuUcag...................	1
+seq_376563_x5   ......................................................................ucaccgUgugaacacuugcag...................	1
+seq_377651_x2   ......................................................................ucaccgggugaGcacuugcag...................	1
+seq_378132_x1   ......................................................................ucacGgggugaacacuugcag...................	1
+seq_372890_x25  ......................................................................ucaccgggugaacaAuugcag...................	1
+seq_374771_x14  ......................................................................ucaccgggugaacacuGgcag...................	1
+seq_377437_x2   ......................................................................ucaGcgggugaacacuugcag...................	1
+seq_378036_x1   ......................................................................ucaccCggugaacacuugcag...................	1
+seq_376347_x6   ......................................................................ucaccgAgugaacacuugcag...................	1
+seq_377515_x2   ......................................................................ucaccgggugaacCcuugcag...................	1
+seq_376807_x4   ......................................................................ucaccgggugUacacuugcag...................	1
+seq_370787_x41  ......................................................................ucaccgggCgaacacuugcag...................	1
+seq_375308_x11  ......................................................................ucaccgggugaacacCugcag...................	1
+seq_376253_x7   ......................................................................ucaccggguUaacacuugcag...................	1
+seq_378309_x1   ......................................................................ucaccgggugaacacuuAcag...................	1
+seq_367812_x78  ......................................................................ucacAgggugaacacuugcag...................	1
+seq_376931_x4   ......................................................................ucaccgggugGacacuugcag...................	1
+seq_376274_x7   ......................................................................ucaccggguAaacacuugcag...................	1
+seq_376911_x4   ......................................................................ucaccggUugaacacuugcag...................	1
+seq_376126_x8   ......................................................................ucaccUggugaacacuugcag...................	1
+seq_376583_x5   ......................................................................ucaccgggugaacacGugcag...................	1
+seq_372173_x31  ......................................................................ucaccgggugaaNacuugcag...................	1
+seq_376643_x5   ......................................................................ucaccgggugCacacuugcag...................	1
+seq_376668_x5   ......................................................................ucaccgggugaacaUuugcag...................	1
+seq_296962_x3796......................................................................ucaccgggugaacacuugcag...................	0
+seq_375958_x8   ......................................................................ucaccgggugaacacuugUag...................	1
+seq_376588_x5   ......................................................................ucaUcgggugaacacuugcag...................	1
+seq_375793_x9   ......................................................................ucaccgggugaacacuugcCg...................	1
+seq_377729_x2   ......................................................................ucaccgggugaUcacuugcag...................	1
+seq_375415_x10  ......................................................................ucaccgggugaacacuugAag...................	1
+seq_377067_x3   ......................................................................ucaccgggugaCcacuugcag...................	1
+seq_376603_x5   ......................................................................Acaccgggugaacacuugcag...................	1
+seq_376425_x6   ......................................................................ucaccgggugaacacuAgcag...................	1
+seq_376162_x7   ......................................................................Gcaccgggugaacacuugcag...................	1
+seq_377333_x2   ......................................................................uNaccgggugaacacuugcag...................	1
+seq_376070_x8   ......................................................................ucaccgggugaacacuugcaC...................	1
+seq_377786_x1   ......................................................................ucaccgggugaacacuugcGg...................	1
+seq_377723_x2   ......................................................................ucGccgggugaacacuugcag...................	1
+seq_373246_x22  ......................................................................ucaccgggugaaAacuugcag...................	1
+seq_376389_x6   ......................................................................ucaccAggugaacacuugcag...................	1
+seq_377355_x2   ......................................................................ucaccgggugaacacuugGag...................	1
+seq_377295_x3   ......................................................................ucaccgggugaacacuCgcag...................	1
+seq_377435_x2   ......................................................................ucaccggguCaacacuugcag...................	1
+seq_376835_x4   ......................................................................ucaccggAugaacacuugcag...................	1
+seq_378141_x1   ......................................................................ucaccggNugaacacuugcag...................	1
+seq_376204_x7   ......................................................................ucaccgggugaacacuuCcag...................	1
+seq_371788_x33  ......................................................................ucaccgggAgaacacuugcag...................	1
+seq_375535_x10  ......................................................................ucaccgggugaacUcuugcag...................	1
+seq_375766_x9   ......................................................................ucaccgggugaaUacuugcag...................	1
+seq_369371_x60  ......................................................................ucaccgggGgaacacuugcag...................	1
+seq_374375_x16  ......................................................................ucaccgggugaacacuugcaU...................	1
+seq_376983_x4   ......................................................................ucCccgggugaacacuugcag...................	1
+seq_376176_x7   ......................................................................ucaccgggugaacacuugNag...................	1
+seq_376593_x5   ......................................................................uGaccgggugaacacuugcag...................	1
+seq_376190_x7   ......................................................................ucacUgggugaacacuugcag...................	1
+seq_375625_x10  ......................................................................ucaAcgggugaacacuugcag...................	1
+seq_360848_x153 ......................................................................ucaccgAgugaacacuugcagu..................	1
+seq_375545_x10  ......................................................................ucacNgggugaacacuugcagu..................	1
+seq_358020_x178 ......................................................................ucaccggAugaacacuugcagu..................	1
+seq_375330_x11  ......................................................................ucaccgggNgaacacuugcagu..................	1
+seq_362156_x140 ......................................................................ucaccgggugaacacuugcaCu..................	1
+seq_323285_x1320......................................................................ucaccgggGgaacacuugcagu..................	1
+seq_366524_x92  ......................................................................ucaccggguAaacacuugcagu..................	1
+seq_364238_x115 ......................................................................Gcaccgggugaacacuugcagu..................	1
+seq_354892_x210 ......................................................................ucaccgggugCacacuugcagu..................	1
+seq_361001_x150 ......................................................................ucaccgggugaacacuuCcagu..................	1
+seq_368261_x70  ......................................................................ucaccCggugaacacuugcagu..................	1
+seq_359745_x162 ......................................................................ucaccgggugGacacuugcagu..................	1
+seq_345299_x327 ......................................................................ucaccgggugaacacuugcUgu..................	1
+seq_369126_x62  ......................................................................ucaccgggugaacCcuugcagu..................	1
+seq_377843_x1   ......................................................................ucaccgggugaacacuuNcagu..................	1
+seq_369064_x62  ......................................................................ucaccgggugaacacuugcaAu..................	1
+seq_357471_x183 ......................................................................ucaccgggugaacacCugcagu..................	1
+seq_362296_x138 ......................................................................ucaccgggugaacacuugcaUu..................	1
+seq_376287_x6   ......................................................................ucNccgggugaacacuugcagu..................	1
+seq_372789_x26  ......................................................................ucaccgggugaGcacuugcagu..................	1
+cel-miR-37      ......................................................................ucaccgggugaacacuugcagu..................	0
+seq_371028_x39  ......................................................................ucaccgggugaacaGuugcagu..................	1
+seq_367490_x83  ......................................................................uNaccgggugaacacuugcagu..................	1
+seq_357284_x187 ......................................................................ucaccgggugaacacuugcagA..................	1
+seq_341170_x448 ......................................................................ucaccgggugaacacuuUcagu..................	1
+seq_332159_x841 ......................................................................ucaccgggAgaacacuugcagu..................	1
+seq_342045_x391 ......................................................................ucaccgggugaacacuugcCgu..................	1
+seq_370868_x40  ......................................................................ucaccgggugaacGcuugcagu..................	1
+seq_372468_x28  ......................................................................ucaccgggugaUcacuugcagu..................	1
+seq_335193_x686 ......................................................................ucaccgggugaaAacuugcagu..................	1
+seq_361297_x146 ......................................................................ucaccAggugaacacuugcagu..................	1
+seq_330395_x911 ......................................................................ucaccgggugaaNacuugcagu..................	1
+seq_341618_x427 ......................................................................ucaccgggugaacaAuugcagu..................	1
+seq_371222_x38  ......................................................................ucaccggNugaacacuugcagu..................	1
+seq_356323_x196 ......................................................................ucaccgggugaaUacuugcagu..................	1
+seq_352711_x226 ......................................................................ucaccgggugaaGacuugcagu..................	1
+seq_362434_x135 ......................................................................ucaccgggugaacUcuugcagu..................	1
+seq_349174_x270 ......................................................................ucaccgggugaacacuugcagC..................	1
+seq_363749_x128 ......................................................................ucaUcgggugaacacuugcagu..................	1
+seq_354041_x214 ......................................................................uAaccgggugaacacuugcagu..................	1
+seq_365022_x107 ......................................................................uUaccgggugaacacuugcagu..................	1
+seq_331306_x853 ......................................................................ucaccgggCgaacacuugcagu..................	1
+seq_363491_x129 ......................................................................ucaccgggugaacacuuAcagu..................	1
+seq_366431_x93  ......................................................................Ccaccgggugaacacuugcagu..................	1
+seq_335879_x674 ......................................................................ucaccgCgugaacacuugcagu..................	1
+seq_365648_x102 ......................................................................ucaccgggugUacacuugcagu..................	1
+seq_371260_x37  ......................................................................ucaccgggugaacacuugGagu..................	1
+seq_363999_x122 ......................................................................ucaccggguCaacacuugcagu..................	1
+seq_375694_x9   ......................................................................Ncaccgggugaacacuugcagu..................	1
+seq_368190_x71  ......................................................................Acaccgggugaacacuugcagu..................	1
+seq_354469_x212 ......................................................................ucaccggguUaacacuugcagu..................	1
+seq_358731_x174 ......................................................................ucaccgggugaacacuAgcagu..................	1
+seq_360693_x155 ......................................................................ucaccgggugaacacuugNagu..................	1
+seq_375565_x10  ......................................................................ucaNcgggugaacacuugcagu..................	1
+seq_363098_x131 ......................................................................ucaccgggugaacacGugcagu..................	1
+seq_319013_x1597......................................................................ucacAgggugaacacuugcagu..................	1
+seq_356905_x190 ......................................................................ucaccUggugaacacuugcagu..................	1
+seq_340154_x508 ......................................................................ucaccgggugaacacuGgcagu..................	1
+seq_355311_x207 ......................................................................ucaccggCugaacacuugcagu..................	1
+seq_149538_x90904......................................................................ucaccgggugaacacuugcagu..................	0
+seq_366051_x97  ......................................................................ucaccgggugaacaUuugcagu..................	1
+seq_373223_x23  ......................................................................ucacGgggugaacacuugcagu..................	1
+seq_364468_x114 ......................................................................ucaccgUgugaacacuugcagu..................	1
+seq_375974_x8   ......................................................................ucUccgggugaacacuugcagu..................	1
+seq_363877_x122 ......................................................................ucaccgggugaacacuNgcagu..................	1
+seq_368539_x67  ......................................................................ucaccgggugaacacuugcGgu..................	1
+seq_377118_x3   ......................................................................ucaccNggugaacacuugcagu..................	1
+seq_344621_x340 ......................................................................ucaAcgggugaacacuugcagu..................	1
+seq_367149_x86  ......................................................................ucaGcgggugaacacuugcagu..................	1
+seq_372496_x27  ......................................................................ucGccgggugaacacuugcagu..................	1
+seq_369665_x55  ......................................................................ucaccgggugaacacAugcagu..................	1
+seq_366337_x94  ......................................................................ucaccggUugaacacuugcagu..................	1
+seq_362569_x133 ......................................................................ucaccgggugaacacuugUagu..................	1
+seq_365339_x104 ......................................................................ucaccgggugaacacuugAagu..................	1
+seq_369188_x61  ......................................................................ucaccgggugaCcacuugcagu..................	1
+seq_371480_x36  ......................................................................ucCccgggugaacacuugcagu..................	1
+seq_351534_x242 ......................................................................ucaccgggugaacacuugcagG..................	1
+seq_365129_x106 ......................................................................ucacUgggugaacacuugcagu..................	1
+seq_365443_x103 ......................................................................uGaccgggugaacacuugcagu..................	1
+seq_359076_x170 ......................................................................ucaccgggugaacacuCgcagu..................	1
+seq_300758_x2851......................................................................ucaccgggugaacacuugcaguU.................	1
+seq_377949_x1   ......................................................................ucaccgggugaacacGugcagug.................	1
+seq_377822_x1   ......................................................................ucaAcgggugaacacuugcagug.................	1
+seq_373861_x19  ......................................................................ucaccgggugaacacuugcagug.................	0
+seq_373378_x22  ......................................................................ucaccgggugaacacuugcaguC.................	1
+seq_377687_x2   ......................................................................ucaccgggugaacacuugcUgug.................	1
+seq_377977_x1   ......................................................................ucaccgggugaacacuugcagGg.................	1
+seq_378118_x1   ......................................................................uAaccgggugaacacuugcagug.................	1
+seq_325900_x1251......................................................................ucaccgggugaacacuugcaguA.................	1
+seq_376855_x4   ......................................................................ucaccgggugaacacuugcagugC................	1
+seq_377858_x1   ......................................................................ucaccgggugaacacuugcaguCg................	1
+seq_378276_x1   ......................................................................ucaccgggugaacacuugcaguUg................	1
+seq_377629_x2   ......................................................................ucaccgggugaacacuugcagugg................	0
+seq_378081_x1   ......................................................................ucaccgggugaacacuugcaguAg................	1
+seq_377256_x3   ......................................................................ucaccgggugaacacuugcagugA................	1
+seq_378246_x1   ......................................................................ucaccgggugaacacuugcagugUu...............	1
+seq_378008_x1   ......................................................................uUaccgggugaacacuugcaguggu...............	1
+seq_378261_x1   ......................................................................ucaccgggugaacacuugcaguggu...............	0
+seq_377773_x1   ......................................................................ucaccgggugaacacuugcaguggA...............	1
+seq_377896_x1   ......................................................................ucaccgggugaacacuugcaguggCc..............	1
+seq_377447_x2   ......................................................................ucaccgggugaacacuugcagugAuc..............	1
+seq_377411_x2   ......................................................................ucaccgggugaacacuugcagugguUc.............	1
+seq_378068_x1   ......................................................................ucaccgggugaacacuugcaguggucA.............	1
+seq_377899_x1   .......................................................................caccgggugaacacuugca....................	0
+seq_373131_x23  .......................................................................caccgggugaacacuugcag...................	0
+seq_377921_x1   .......................................................................cGccgggugaacacuugcag...................	1
+seq_377857_x1   .......................................................................caccgggugaacaUuugcag...................	1
+seq_377943_x1   .......................................................................caAcgggugaacacuugcag...................	1
+seq_378214_x1   .......................................................................caccgggugaCcacuugcagu..................	1
+seq_374011_x18  .......................................................................caccgggGgaacacuugcagu..................	1
+seq_377835_x1   .......................................................................caccgggugaacacNugcagu..................	1
+seq_378263_x1   .......................................................................caccgggugaaGacuugcagu..................	1
+seq_378018_x1   .......................................................................caccgggugaacNcuugcagu..................	1
+seq_376086_x8   .......................................................................caAcgggugaacacuugcagu..................	1
+seq_377900_x1   .......................................................................cNccgggugaacacuugcagu..................	1
+seq_377928_x1   .......................................................................caccgggugaacacGugcagu..................	1
+seq_377461_x2   .......................................................................caccgggugaacacuuCcagu..................	1
+seq_376688_x5   .......................................................................caccgggugaacacuugcagC..................	1
+seq_376260_x7   .......................................................................caccgggugaaAacuugcagu..................	1
+seq_378164_x1   .......................................................................caccgggugaacaAuugcagu..................	1
+seq_377715_x2   .......................................................................caccgggugaacacuCgcagu..................	1
+seq_378016_x1   .......................................................................caccggguCaacacuugcagu..................	1
+seq_376755_x4   .......................................................................Uaccgggugaacacuugcagu..................	1
+seq_377795_x1   .......................................................................caccAggugaacacuugcagu..................	1
+seq_377649_x2   .......................................................................caccgggugaacacuuAcagu..................	1
+seq_376553_x5   .......................................................................caccgggCgaacacuugcagu..................	1
+seq_377804_x1   .......................................................................caccggAugaacacuugcagu..................	1
+seq_378111_x1   .......................................................................caccgggugaacacuAgcagu..................	1
+seq_377022_x3   .......................................................................caccgggugaacacuugcagA..................	1
+seq_378030_x1   .......................................................................caccgggugaacacuGgcagu..................	1
+seq_376419_x6   .......................................................................caccgggAgaacacuugcagu..................	1
+seq_377990_x1   .......................................................................cCccgggugaacacuugcagu..................	1
+seq_348053_x285 .......................................................................caccgggugaacacuugcagu..................	0
+seq_377904_x1   .......................................................................cGccgggugaacacuugcagu..................	1
+seq_377202_x3   .......................................................................caccgggugaacacuugcUgu..................	1
+seq_378161_x1   .......................................................................cacGgggugaacacuugcagu..................	1
+seq_378003_x1   .......................................................................caccgggugaacacuugcagCg.................	1
+seq_353384_x221 .......................................................................caccgggugaacacuugcaguU.................	1
+seq_361874_x141 .......................................................................caccgggugaacacuugcaguA.................	1
+seq_374439_x16  .......................................................................caccgggugaacacuugcagug.................	0
+seq_377286_x3   .......................................................................caccgggugaacacuugcaguC.................	1
+seq_378303_x1   .......................................................................caccgggugaacacuugcagugC................	1
+seq_378195_x1   .......................................................................caccgggugaacacuugcagugU................	1
+seq_378250_x1   .......................................................................caccgggugaacacuugcaguUg................	1
+seq_376094_x8   ........................................................................accgggugaacacuugca....................	0
+seq_378188_x1   ........................................................................accgggCgaacacuugca....................	1
+seq_378220_x1   ........................................................................accgggugaacacAugca....................	1
+seq_378102_x1   ........................................................................accgggAgaacacuugcag...................	1
+seq_377805_x1   ........................................................................accCggugaacacuugcag...................	1
+seq_378298_x1   ........................................................................accgggugaacacuugcCg...................	1
+seq_377965_x1   ........................................................................accgggCgaacacuugcag...................	1
+seq_370405_x44  ........................................................................accgggugaacacuugcag...................	0
+seq_378289_x1   ........................................................................accgggugaacacCugcag...................	1
+seq_377998_x1   ........................................................................accggUugaacacuugcag...................	1
+seq_378052_x1   ........................................................................aGcgggugaacacuugcag...................	1
+seq_377609_x2   ........................................................................accgggugaacacuAgcagu..................	1
+seq_377671_x2   ........................................................................accggguAaacacuugcagu..................	1
+seq_378237_x1   ........................................................................accgggugCacacuugcagu..................	1
+seq_375721_x9   ........................................................................accgggugaaAacuugcagu..................	1
+seq_333757_x746 ........................................................................accgggugaacacuugcagu..................	0
+seq_378184_x1   ........................................................................accgggugaacacuugcUgu..................	1
+seq_377441_x2   ........................................................................accAggugaacacuugcagu..................	1
+seq_378101_x1   ........................................................................accgggugaaGacuugcagu..................	1
+seq_377611_x2   ........................................................................accgggugGacacuugcagu..................	1
+seq_377721_x2   ........................................................................accgggugaacacuugUagu..................	1
+seq_378156_x1   ........................................................................accgggugaacGcuugcagu..................	1
+seq_376847_x4   ........................................................................accggguCaacacuugcagu..................	1
+seq_377385_x2   ........................................................................accUggugaacacuugcagu..................	1
+seq_378307_x1   ........................................................................accggCugaacacuugcagu..................	1
+seq_378076_x1   ........................................................................accgggugaacacCugcagu..................	1
+seq_376823_x4   ........................................................................accgggugaacCcuugcagu..................	1
+seq_375685_x9   ........................................................................accgggugaacacuugcagC..................	1
+seq_377160_x3   ........................................................................accggguUaacacuugcagu..................	1
+seq_377661_x2   ........................................................................accgggugaacacuGgcagu..................	1
+seq_377601_x2   ........................................................................accggUugaacacuugcagu..................	1
+seq_377172_x3   ........................................................................accgAgugaacacuugcagu..................	1
+seq_376473_x6   ........................................................................accgCgugaacacuugcagu..................	1
+seq_375982_x8   ........................................................................accgggugaacacuugcagA..................	1
+seq_373108_x23  ........................................................................accgggugaacacuugcCgu..................	1
+seq_377549_x2   ........................................................................accgUgugaacacuugcagu..................	1
+seq_375124_x12  ........................................................................accCggugaacacuugcagu..................	1
+seq_377226_x3   ........................................................................accgggugaacacuuCcagu..................	1
+seq_377847_x1   ........................................................................accgggugaaUacuugcagu..................	1
+seq_377973_x1   ........................................................................Cccgggugaacacuugcagu..................	1
+seq_378201_x1   ........................................................................aUcgggugaacacuugcagu..................	1
+seq_373485_x21  ........................................................................accgggugaacacuuUcagu..................	1
+seq_377169_x3   ........................................................................accgggugaacaAuugcagu..................	1
+seq_376598_x5   ........................................................................accgggugaacacuugcaCu..................	1
+seq_377277_x3   ........................................................................accgggugUacacuugcagu..................	1
+seq_371920_x33  ........................................................................accgggCgaacacuugcagu..................	1
+seq_376971_x4   ........................................................................accgggugaacaNuugcagu..................	1
+seq_377789_x1   ........................................................................accgggugaacacuugcaUu..................	1
+seq_377184_x3   ........................................................................accgggugaacacuugcagG..................	1
+seq_374359_x16  ........................................................................accgggGgaacacuugcagu..................	1
+seq_377393_x2   ........................................................................accgggugaacacGugcagu..................	1
+seq_378233_x1   ........................................................................Uccgggugaacacuugcagu..................	1
+seq_377986_x1   ........................................................................accgggugaacacuugGagu..................	1
+seq_378002_x1   ........................................................................accgggugaacacuuAcagu..................	1
+seq_377593_x2   ........................................................................aGcgggugaacacuugcagu..................	1
+seq_378152_x1   ........................................................................accgggugaacaUuugcagu..................	1
+seq_377713_x2   ........................................................................aAcgggugaacacuugcagu..................	1
+seq_375148_x12  ........................................................................accgggAgaacacuugcagu..................	1
+seq_376951_x4   ........................................................................acAgggugaacacuugcagu..................	1
+seq_377322_x3   ........................................................................acUgggugaacacuugcagu..................	1
+seq_376341_x6   ........................................................................accgggugaacacuugAagu..................	1
+seq_377930_x1   ........................................................................accggAugaacacuugcagu..................	1
+seq_374519_x16  ........................................................................accgggugaacacuugcaguA.................	1
+seq_372411_x29  ........................................................................accgggugaacacuugcaguU.................	1
+seq_378026_x1   ........................................................................accgggugaacacuugcaguUg................	1
+seq_377861_x1   .........................................................................ccgggugaacacuugcag...................	0
+seq_378241_x1   .........................................................................Ucgggugaacacuugcag...................	1
+seq_377301_x3   .........................................................................ccgggugaacacuugcagu..................	0
+seq_377407_x2   .........................................................................Ucgggugaacacuugcagu..................	1
+seq_377810_x1   ..........................................................................cgggCgaacacuugcagu..................	1
+seq_377232_x3   ..........................................................................cgggugaacacuugcagu..................	0
+
+
+
+>chrII:11534525-11540624_17
+score total		       17007.3
+score for star read(s)	           3.9
+score for read counts	       16996.7
+score for mfe		           2.1
+score for randfold	           1.6
+score for cons. seed	             3
+miRNA with same seed	    cbr-miR-35
+total read count	         33350
+mature read count	         33300
+loop read count		             0
+star read count		            50
+exp             ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
+obs             ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
+pri_seq         uggugucuccgaaccuccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggugcau
+pri_struct      .(((........))).(((((((((((((.(((.((((((((((.((.(((((.(((.......))).))))).)))))))))))).))).))))))))..))))).....	#MM
+seq_377533_x2   ..............................aguggauguaugccaugaugau...........................................................	0
+seq_378330_x1   ..............................aguggUuguaugccaugaugaua..........................................................	1
+seq_372324_x29  ..............................aguggauguaugccaugaugaua..........................................................	0
+seq_377836_x1   ..............................aguggauguaugccaugUugaua..........................................................	1
+seq_377982_x1   ..............................aguggauguaugcUaugaugaua..........................................................	1
+seq_377969_x1   ..............................aguggauguaugccaugaAgaua..........................................................	1
+seq_377763_x1   ..............................aguggauguaugccauUaugaua..........................................................	1
+seq_378104_x1   ..............................aguggauguUugccaugaugaua..........................................................	1
+seq_377950_x1   ..............................aguggauguauUccaugaugaua..........................................................	1
+seq_378126_x1   ..............................aguggauguaugccaugaugauG..........................................................	1
+seq_378062_x1   ..............................aguggauguaugccaugaugCua..........................................................	1
+seq_377681_x2   ..............................aguggaugGaugccaugaugaua..........................................................	1
+seq_377987_x1   ..............................aguggauguaugccaugaugGua..........................................................	1
+seq_376329_x6   ..............................aguggauguaugccaugaugauaU.........................................................	1
+seq_378173_x1   ...............................guggauguaugccaugaugauaaga.......................................................	0
+seq_378011_x1   ..................................................................ccGaucaccggguguacaucagcu.....................	1
+seq_377862_x1   ...................................................................cuaucaccggguguacaucag.......................	0
+seq_377748_x1   ...................................................................Auaucaccggguguacaucagc......................	1
+seq_375595_x10  ...................................................................cuaucaccggguguacaucagc......................	0
+seq_377699_x2   ...................................................................cuaucaccggguguacaucagcu.....................	0
+seq_377832_x1   ...................................................................cuaucaccggguguacaucagUu.....................	1
+seq_378096_x1   ...................................................................cuaucaccggguguacaGcagcu.....................	1
+seq_377817_x1   ...................................................................cuaucaccggguguacaucagcA.....................	1
+seq_378035_x1   ...................................................................cCaucaccggguguacaucagcuaa...................	1
+seq_377679_x2   ....................................................................Aaucaccggguguacaucagcu.....................	1
+seq_369825_x52  ....................................................................Aaucaccggguguacaucagcuaa...................	1
+seq_377760_x1   .....................................................................aucaccggguguacaucag.......................	0
+seq_378000_x1   .....................................................................Cucaccggguguacaucagcua....................	1
+seq_378278_x1   .....................................................................aucaccggguguacaucaCcua....................	1
+seq_376431_x6   .....................................................................aucaccggguguacaucagcua....................	0
+seq_377784_x1   .....................................................................aucaccggguguacaucaUcuaa...................	1
+seq_371721_x34  .....................................................................aucaccggguguacaucagcuaa...................	0
+seq_378142_x1   .....................................................................aGcaccggguguacaucagcuaa...................	1
+seq_378021_x1   .....................................................................aAcaccggguguacaucagcuaa...................	1
+seq_377769_x1   .....................................................................aucaccgggAguacaucagcuaa...................	1
+seq_374423_x16  .....................................................................Cucaccggguguacaucagcuaa...................	1
+seq_378169_x1   .....................................................................aucaccCgguguacaucagcuaa...................	1
+seq_377968_x1   .....................................................................aucaAcggguguacaucagcuaa...................	1
+seq_377627_x2   .....................................................................aucaccggguguacaucagcuaaA..................	1
+seq_377489_x2   .....................................................................aucaccggguguacaucagcuaaU..................	1
+seq_378296_x1   ......................................................................ucaccggUuguacaucag.......................	1
+seq_377770_x1   ......................................................................ucaccggguguacaucNg.......................	1
+seq_377477_x2   ......................................................................ucaccggguguacaucaA.......................	1
+seq_372550_x27  ......................................................................ucaccggguguacaucag.......................	0
+seq_368936_x64  ......................................................................ucaccggguguacaucagc......................	0
+seq_377979_x1   ......................................................................ucaccggguguaNaucagc......................	1
+seq_377984_x1   ......................................................................ucaccggguguacaucaUc......................	1
+seq_377865_x1   ......................................................................ucaccggguguacaucaAc......................	1
+seq_377751_x1   ......................................................................ucaccgggCguacaucagc......................	1
+seq_378287_x1   ......................................................................ucaccgggugGacaucagc......................	1
+seq_377845_x1   ......................................................................ucaccgggGguacaucagc......................	1
+seq_377833_x1   ......................................................................ucaccgggugCacaucagc......................	1
+seq_378221_x1   ......................................................................ucaccggguguacCucagc......................	1
+seq_378110_x1   ......................................................................ucacUggguguacaucagc......................	1
+seq_377981_x1   ......................................................................ucaccggguguaUaucagcu.....................	1
+seq_378183_x1   ......................................................................ucaccggguguaNaucagcu.....................	1
+seq_378231_x1   ......................................................................ucaccggguguacaucagGu.....................	1
+seq_377689_x2   ......................................................................ucaccggguguacaucaUcu.....................	1
+seq_378193_x1   ......................................................................ucaccggguguacaGcagcu.....................	1
+seq_377823_x1   ......................................................................ucaccgggugCacaucagcu.....................	1
+seq_377826_x1   ......................................................................ucaccgggCguacaucagcu.....................	1
+seq_357837_x183 ......................................................................ucaccggguguacaucagcu.....................	0
+seq_378217_x1   ......................................................................ucaccgggGguacaucagcu.....................	1
+seq_377799_x1   ......................................................................ucaccggguguacauAagcu.....................	1
+seq_377485_x2   ......................................................................ucaccgggugGacaucagcu.....................	1
+seq_377942_x1   ......................................................................ucaccgggugAacaucagcu.....................	1
+seq_376359_x6   ......................................................................ucacAggguguacaucagcu.....................	1
+seq_378125_x1   ......................................................................ucaccggguguacUucagcu.....................	1
+seq_377759_x1   ......................................................................ucaccggguguacaucagUu.....................	1
+seq_378324_x1   ......................................................................ucaccggguguacaCcagcu.....................	1
+seq_378274_x1   ......................................................................ucaccUgguguacaucagcu.....................	1
+seq_377967_x1   ......................................................................ucaccggguguacaucaCcua....................	1
+seq_375775_x9   ......................................................................ucaccgggugCacaucagcua....................	1
+seq_377926_x1   ......................................................................ucaccggguguacaucUgcua....................	1
+seq_377028_x3   ......................................................................ucaccggguguacaucagNua....................	1
+seq_377911_x1   ......................................................................ucaccggguCuacaucagcua....................	1
+seq_377625_x2   ......................................................................ucaccggguguaUaucagcua....................	1
+seq_377735_x2   ......................................................................ucaccggguguaGaucagcua....................	1
+seq_378240_x1   ......................................................................ucaccggguguacauGagcua....................	1
+seq_377703_x2   ......................................................................Gcaccggguguacaucagcua....................	1
+seq_376299_x6   ......................................................................ucaccgggCguacaucagcua....................	1
+seq_377091_x3   ......................................................................ucaccggguguacaucagcuC....................	1
+seq_378044_x1   ......................................................................ucaccggguguacaGcagcua....................	1
+seq_377016_x3   ......................................................................ucaccgggugGacaucagcua....................	1
+seq_377040_x3   ......................................................................ucaccgggugAacaucagcua....................	1
+seq_377587_x2   ......................................................................ucaccggguguacaucagcGa....................	1
+seq_377677_x2   ......................................................................ucaccggguUuacaucagcua....................	1
+seq_377316_x3   ......................................................................ucaccggguguacaucagcAa....................	1
+seq_378223_x1   ......................................................................ucaccggguAuacaucagcua....................	1
+seq_378198_x1   ......................................................................ucaccggguguacaucagGua....................	1
+seq_374137_x18  ......................................................................ucaccgggAguacaucagcua....................	1
+seq_378149_x1   ......................................................................uAaccggguguacaucagcua....................	1
+seq_328388_x1017......................................................................ucaccggguguacaucagcua....................	0
+seq_377771_x1   ......................................................................ucaccggguguCcaucagcua....................	1
+seq_372264_x30  ......................................................................ucacAggguguacaucagcua....................	1
+seq_377922_x1   ......................................................................ucaAcggguguacaucagcua....................	1
+seq_376558_x5   ......................................................................ucaccggguguacaucagcuU....................	1
+seq_376843_x4   ......................................................................ucaccggguguacaucagAua....................	1
+seq_376239_x7   ......................................................................ucaccggguguaNaucagcua....................	1
+seq_378048_x1   ......................................................................ucaccggAuguacaucagcua....................	1
+seq_378097_x1   ......................................................................Ccaccggguguacaucagcua....................	1
+seq_377864_x1   ......................................................................ucaccggguguacUucagcua....................	1
+seq_378235_x1   ......................................................................ucaccAgguguacaucagcua....................	1
+seq_376467_x6   ......................................................................ucaccggguguacaucaUcua....................	1
+seq_377501_x2   ......................................................................ucaccggguguacaucaAcua....................	1
+seq_378310_x1   ......................................................................ucaccggguguacaucagcuG....................	1
+seq_376967_x4   ......................................................................ucaccggguguacaucCgcua....................	1
+seq_378279_x1   ......................................................................ucaGcggguguacaucagcua....................	1
+seq_377337_x2   ......................................................................uUaccggguguacaucagcua....................	1
+seq_375319_x11  ......................................................................ucaccgggGguacaucagcua....................	1
+seq_378227_x1   ......................................................................Ncaccggguguacaucagcua....................	1
+seq_378166_x1   ......................................................................ucaccggguguacaucagcCa....................	1
+seq_377262_x3   ......................................................................ucaccgCguguacaucagcua....................	1
+seq_377043_x3   ......................................................................ucaccggguguacaucagUua....................	1
+seq_378148_x1   ......................................................................ucaccggguguacGucagcua....................	1
+seq_376883_x4   ......................................................................ucaccggguguacauAagcua....................	1
+seq_377244_x3   ......................................................................ucaccggguguaAaucagcua....................	1
+seq_377139_x3   ......................................................................ucacUggguguacaucagcua....................	1
+seq_378225_x1   ......................................................................ucaNcggguguacaucagcua....................	1
+seq_376919_x4   ......................................................................ucaccUgguguacaucagcua....................	1
+seq_377223_x3   ......................................................................ucaccggCuguacaucagcua....................	1
+seq_367890_x78  ......................................................................ucaccggguguaAaucagcuaa...................	1
+seq_344961_x338 ......................................................................ucaccggguguacaucagcuaU...................	1
+seq_370908_x40  ......................................................................ucaccggAuguacaucagcuaa...................	1
+seq_372049_x31  ......................................................................ucaccAgguguacaucagcuaa...................	1
+seq_375374_x11  ......................................................................ucaccggguguacGucagcuaa...................	1
+seq_370360_x45  ......................................................................ucaccggguguacaucagcuUa...................	1
+seq_371334_x37  ......................................................................ucaUcggguguacaucagcuaa...................	1
+seq_376365_x6   ......................................................................ucaccggguguacauGagcuaa...................	1
+seq_372964_x24  ......................................................................ucaccggguguacaucagcGaa...................	1
+seq_374869_x13  ......................................................................ucaccggguguUcaucagcuaa...................	1
+seq_375352_x11  ......................................................................ucaccggguguCcaucagcuaa...................	1
+seq_355926_x199 ......................................................................ucaccggguguacaucaUcuaa...................	1
+seq_352937_x224 ......................................................................ucaccgggCguacaucagcuaa...................	1
+seq_377737_x2   ......................................................................ucNccggguguacaucagcuaa...................	1
+seq_360066_x159 ......................................................................ucaccgggAguacaucagcuaa...................	1
+seq_370622_x42  ......................................................................ucaccggguUuacaucagcuaa...................	1
+seq_371585_x34  ......................................................................ucaccUgguguacaucagcuaa...................	1
+seq_374241_x17  ......................................................................ucaGcggguguacaucagcuaa...................	1
+seq_240442_x25577......................................................................ucaccggguguacaucagcuaa...................	0
+seq_373527_x21  ......................................................................uNaccggguguacaucagcuaa...................	1
+seq_342825_x384 ......................................................................ucacAggguguacaucagcuaa...................	1
+seq_370080_x48  ......................................................................uAaccggguguacaucagcuaa...................	1
+seq_378040_x1   ......................................................................ucaccgggNguacaucagcuaa...................	1
+seq_369773_x52  ......................................................................ucaccggguguaUaucagcuaa...................	1
+cel-miR-40      ......................................................................ucaccggguguacaucagcuaa...................	0
+seq_374785_x14  ......................................................................ucCccggguguacaucagcuaa...................	1
+seq_368871_x65  ......................................................................ucaAcggguguacaucagcuaa...................	1
+seq_349713_x268 ......................................................................ucaccggguguaNaucagcuaa...................	1
+seq_374841_x14  ......................................................................ucaccggguguacaucagcAaa...................	1
+seq_371619_x34  ......................................................................ucacUggguguacaucagcuaa...................	1
+seq_375585_x10  ......................................................................ucaccggguguacaucagGuaa...................	1
+seq_370828_x40  ......................................................................ucaccggCuguacaucagcuaa...................	1
+seq_372915_x25  ......................................................................ucaccggguguacCucagcuaa...................	1
+seq_370449_x44  ......................................................................uUaccggguguacaucagcuaa...................	1
+seq_372111_x31  ......................................................................ucaccggguCuacaucagcuaa...................	1
+seq_372604_x27  ......................................................................uGaccggguguacaucagcuaa...................	1
+seq_368331_x70  ......................................................................ucaccggguguacaucagAuaa...................	1
+seq_376698_x5   ......................................................................ucaNcggguguacaucagcuaa...................	1
+seq_375515_x10  ......................................................................ucaccggguguacaucagcCaa...................	1
+seq_368401_x69  ......................................................................ucaccggguguacaucaCcuaa...................	1
+seq_374487_x16  ......................................................................Gcaccggguguacaucagcuaa...................	1
+seq_370222_x46  ......................................................................ucaccggguguacaucagNuaa...................	1
+seq_374155_x18  ......................................................................ucaccggguAuacaucagcuaa...................	1
+seq_374999_x13  ......................................................................ucaccCgguguacaucagcuaa...................	1
+seq_373648_x20  ......................................................................Ccaccggguguacaucagcuaa...................	1
+seq_366797_x89  ......................................................................ucaccggguguacaucagcuaC...................	1
+seq_375363_x11  ......................................................................ucaccggguguGcaucagcuaa...................	1
+seq_371145_x39  ......................................................................ucaccggguguacaucagcuGa...................	1
+seq_347479_x287 ......................................................................ucaccgggGguacaucagcuaa...................	1
+seq_376713_x5   ......................................................................ucUccggguguacaucagcuaa...................	1
+seq_375966_x8   ......................................................................ucGccggguguacaucagcuaa...................	1
+seq_375038_x13  ......................................................................Acaccggguguacaucagcuaa...................	1
+seq_351287_x247 ......................................................................ucaccgggugGacaucagcuaa...................	1
+seq_371953_x32  ......................................................................ucaccgAguguacaucagcuaa...................	1
+seq_377058_x3   ......................................................................Ncaccggguguacaucagcuaa...................	1
+seq_370314_x46  ......................................................................ucaccggguguacaucGgcuaa...................	1
+seq_375665_x10  ......................................................................ucaccggguguacaCcagcuaa...................	1
+seq_375865_x9   ......................................................................ucaccggNuguacaucagcuaa...................	1
+seq_367573_x83  ......................................................................ucaccggguguacaucagcuCa...................	1
+seq_364353_x115 ......................................................................ucaccgCguguacaucagcuaa...................	1
+seq_369249_x61  ......................................................................ucaccggguguaGaucagcuaa...................	1
+seq_369877_x52  ......................................................................ucaccggguguacaucUgcuaa...................	1
+seq_369720_x53  ......................................................................ucaccggguguacaucaAcuaa...................	1
+seq_374101_x18  ......................................................................ucaccggUuguacaucagcuaa...................	1
+seq_367406_x84  ......................................................................ucaccggguguacaucCgcuaa...................	1
+seq_369490_x59  ......................................................................ucaccgggugAacaucagcuaa...................	1
+seq_375703_x9   ......................................................................ucaccggguguacaucagcuaG...................	1
+seq_376134_x7   ......................................................................ucaccggguguacaAcagcuaa...................	1
+seq_368118_x72  ......................................................................ucaccggguguacaucagUuaa...................	1
+seq_348903_x271 ......................................................................ucaccgggugCacaucagcuaa...................	1
+seq_377617_x2   ......................................................................ucacGggguguacaucagcuaa...................	1
+seq_364804_x110 ......................................................................ucaccggguguacauAagcuaa...................	1
+seq_366707_x90  ......................................................................ucaccggguguacauUagcuaa...................	1
+seq_373899_x19  ......................................................................ucaccgUguguacaucagcuaa...................	1
+seq_370175_x47  ......................................................................ucaccggguguacaucNgcuaa...................	1
+seq_372711_x26  ......................................................................ucaccggguguacaGcagcuaa...................	1
+seq_369549_x59  ......................................................................ucaccggguguacUucagcuaa...................	1
+seq_343569_x355 ......................................................................ucaccggguguacaucagcuaaU..................	1
+seq_372440_x28  ......................................................................ucaccggguguacaucagcuaaC..................	1
+seq_374029_x18  ......................................................................ucaccggguguacaucagcuaag..................	0
+seq_378259_x1   ......................................................................ucaccgggAguacaucagcuaag..................	1
+seq_339613_x541 ......................................................................ucaccggguguacaucagcuaaA..................	1
+seq_377595_x2   ......................................................................ucaccggguguacaucagcuaagU.................	1
+seq_377749_x1   ......................................................................ucaccggguguacaucagcuaagC.................	1
+seq_378291_x1   ......................................................................ucaccggguguacaucagcuaagg.................	0
+seq_378129_x1   ......................................................................ucaccggguguacaucagcuaaAg.................	1
+seq_378039_x1   ......................................................................ucaccggguguacaucagcuaaggC................	1
+seq_376232_x7   .......................................................................caccggguguacaucagcua....................	0
+seq_377964_x1   .......................................................................caccggguguacNucagcuaa...................	1
+seq_377241_x3   .......................................................................caccggguguaGaucagcuaa...................	1
+seq_377764_x1   .......................................................................Uaccggguguacaucagcuaa...................	1
+seq_377933_x1   .......................................................................caccUgguguacaucagcuaa...................	1
+seq_377635_x2   .......................................................................caccgggugAacaucagcuaa...................	1
+seq_368044_x74  .......................................................................caccggguguacaucagcuaa...................	0
+seq_377455_x2   .......................................................................caccgggGguacaucagcuaa...................	1
+seq_378316_x1   .......................................................................caccggguguacaucaCcuaa...................	1
+seq_377467_x2   .......................................................................caccggguguacaucagcuaag..................	0
+seq_374065_x18  .......................................................................caccggguguacaucagcuaaU..................	1
+seq_377535_x2   .......................................................................caccggguguacaucagcuaaC..................	1
+seq_373747_x19  .......................................................................caccggguguacaucagcuaaA..................	1
+seq_377585_x2   ........................................................................accggguguacaucagcu.....................	0
+seq_376955_x4   ........................................................................accggguguacaucagcua....................	0
+seq_378020_x1   ........................................................................accgggugCacaucagcuaa...................	1
+seq_378224_x1   ........................................................................acAggguguacaucagcuaa...................	1
+seq_377860_x1   ........................................................................accggguguaUaucagcuaa...................	1
+seq_377220_x3   ........................................................................accggguguacaucagGuaa...................	1
+seq_377745_x1   ........................................................................Uccggguguacaucagcuaa...................	1
+seq_377887_x1   ........................................................................accgUguguacaucagcuaa...................	1
+seq_378139_x1   ........................................................................accggguguacaucagcCaa...................	1
+seq_378244_x1   ........................................................................accgCguguacaucagcuaa...................	1
+seq_377939_x1   ........................................................................accggguAuacaucagcuaa...................	1
+seq_377569_x2   ........................................................................accggguguacaucUgcuaa...................	1
+seq_375275_x11  ........................................................................accgggCguacaucagcuaa...................	1
+seq_378306_x1   ........................................................................acGggguguacaucagcuaa...................	1
+seq_377280_x3   ........................................................................accggguguacauAagcuaa...................	1
+seq_351776_x240 ........................................................................accggguguacaucagcuaa...................	0
+seq_378004_x1   ........................................................................accggguguacaucaUcuaa...................	1
+seq_378267_x1   ........................................................................accggguguacaucagcuaC...................	1
+seq_377157_x3   ........................................................................accggguguacaucagAuaa...................	1
+seq_376633_x5   ........................................................................accggguguacaucCgcuaa...................	1
+seq_376767_x4   ........................................................................accCgguguacaucagcuaa...................	1
+seq_378206_x1   ........................................................................accggguguacaGcagcuaa...................	1
+seq_377499_x2   ........................................................................accggguguacaucaCcuaa...................	1
+seq_377607_x2   ........................................................................accggguguacaucagcuCa...................	1
+seq_377469_x2   ........................................................................aGcggguguacaucagcuaa...................	1
+seq_377623_x2   ........................................................................accggguguacaucagcuaU...................	1
+seq_376503_x6   ........................................................................accgggugGacaucagcuaa...................	1
+seq_377579_x2   ........................................................................accgggAguacaucagcuaa...................	1
+seq_377347_x2   ........................................................................aAcggguguacaucagcuaa...................	1
+seq_377905_x1   ........................................................................Nccggguguacaucagcuaa...................	1
+seq_376618_x5   ........................................................................accgggGguacaucagcuaa...................	1
+seq_377367_x2   ........................................................................accggguguacCucagcuaa...................	1
+seq_377310_x3   ........................................................................accggguguacaNcagcuaa...................	1
+seq_376759_x4   ........................................................................accggguguacaucagcuaaA..................	1
+seq_377869_x1   ........................................................................accggguguacaucagcuaaU..................	1
+seq_378311_x1   .........................................................................ccggguguacaucagcua....................	0
+seq_378258_x1   .........................................................................cAggguguacaucagcuaa...................	1
+seq_377659_x2   .........................................................................ccggguguacaucagcuaa...................	0
+
+
+
+>chrII:11534525-11540624_9
+score total		        7482.8
+score for star read(s)	           3.9
+score for read counts	        7472.1
+score for mfe		           2.2
+score for randfold	           1.6
+score for cons. seed	             3
+miRNA with same seed	    cbr-miR-35
+total read count	         14668
+mature read count	         14617
+loop read count		             0
+star read count		            51
+exp             fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
+obs             fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
+pri_seq         ccacuugcuccaccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcggaaaga
+pri_struct      ............((((.((((((((.(((.((.(((((((((((..(((.((((((.......).))))).))).))))))))))).)).))).)))))))))))).....	#MM
+seq_377936_x1   .............................cgccaauuuucgcuucagCgc.............................................................	1
+seq_377645_x2   .............................cgccaauuuucgcuucagugcu............................................................	0
+seq_377966_x1   .............................cgccaauuuucgcuucaguUcu............................................................	1
+seq_378302_x1   .............................cgAcaauuuucgcuucagugcua...........................................................	1
+seq_371297_x37  .............................cgccaauuuucgcuucagugcua...........................................................	0
+seq_378170_x1   .............................cgccaauuuucgcuucagCgcua...........................................................	1
+seq_378042_x1   .............................cgccaauuuucgcuucagGgcua...........................................................	1
+seq_377163_x3   .............................cgccaauuuucgcuucaUugcua...........................................................	1
+seq_377387_x2   .............................cgccaauuuucgcuucagugcuaU..........................................................	1
+seq_378257_x1   ..............................gccaauuuucgcuucaAugcua...........................................................	1
+seq_378254_x1   ..............................gccaCuuuucgcuucagugcua...........................................................	1
+seq_378197_x1   ...................................................................cuaucaccgggCgaaaauucgca.....................	1
+seq_373804_x19  ....................................................................Aaucaccgggugaaaauucgcaug...................	1
+seq_378229_x1   ....................................................................uCucaccgggugaaaauucgcaug...................	1
+seq_378144_x1   .....................................................................aucaAcgggugaaaauucgcaug...................	1
+seq_375076_x12  .....................................................................aucaccgggugaaaauucgcaug...................	0
+seq_375525_x10  .....................................................................Cucaccgggugaaaauucgcaug...................	1
+seq_378009_x1   .....................................................................Uucaccgggugaaaauucgcaug...................	1
+seq_377761_x1   ......................................................................ucaccgggugaaaauucgc......................	0
+seq_377369_x2   ......................................................................ucacAgggugaaaauucgca.....................	1
+seq_377937_x1   ......................................................................ucaccgggugaaaauuAgca.....................	1
+seq_372815_x25  ......................................................................ucaccgggugaaaauucgca.....................	0
+seq_378192_x1   ......................................................................ucaccgggCgaaaauucgca.....................	1
+seq_378019_x1   ......................................................................ucaccgggugUaaauucgca.....................	1
+seq_377785_x1   ......................................................................ucaccgggugaUaauucgca.....................	1
+seq_377409_x2   ......................................................................ucaccgggGgaaaauucgca.....................	1
+seq_377790_x1   ......................................................................ucaccgggugaaaauucgUa.....................	1
+seq_378098_x1   ......................................................................ucaccgggugaaaauucUcau....................	1
+seq_377907_x1   ......................................................................ucaccgggugaaaauucgcCu....................	1
+seq_352482_x229 ......................................................................ucaccgggugaaaauucgcau....................	0
+seq_377756_x1   ......................................................................ucaccgUgugaaaauucgcau....................	1
+seq_376515_x6   ......................................................................ucacAgggugaaaauucgcau....................	1
+seq_377952_x1   ......................................................................ucaccgggugUaaauucgcau....................	1
+seq_377985_x1   ......................................................................ucacUgggugaaaauucgcau....................	1
+seq_377691_x2   ......................................................................ucaccggguUaaaauucgcau....................	1
+seq_377934_x1   ......................................................................ucaccgggugaaaauucAcau....................	1
+seq_377124_x3   ......................................................................ucaccgggGgaaaauucgcau....................	1
+seq_378069_x1   ......................................................................uGaccgggugaaaauucgcau....................	1
+seq_378028_x1   ......................................................................ucaccgCgugaaaauucgcau....................	1
+seq_376323_x6   ......................................................................ucaccgggugaaaauuAgcau....................	1
+seq_378269_x1   ......................................................................ucaccgggugaaGauucgcau....................	1
+seq_377993_x1   ......................................................................ucaccgggugaaaauucgcaG....................	1
+seq_378033_x1   ......................................................................ucaAcgggugaaaauucgcau....................	1
+seq_378271_x1   ......................................................................uAaccgggugaaaauucgcau....................	1
+seq_377121_x3   ......................................................................ucaccgggugaaNauucgcau....................	1
+seq_377497_x2   ......................................................................ucaccgggugaaaauuGgcau....................	1
+seq_373728_x19  ......................................................................ucaccgggugaCaauucgcaug...................	1
+seq_360225_x157 ......................................................................ucaccgggCgaaaauucgcaug...................	1
+seq_373268_x22  ......................................................................ucaccgggugaaaauucgcauC...................	1
+seq_377271_x3   ......................................................................ucaccgggugaaaauucgGaug...................	1
+seq_374343_x16  ......................................................................Gcaccgggugaaaauucgcaug...................	1
+seq_373506_x21  ......................................................................ucaccAggugaaaauucgcaug...................	1
+seq_372204_x30  ......................................................................ucaccgggugaaCauucgcaug...................	1
+seq_347181_x298 ......................................................................ucacAgggugaaaauucgcaug...................	1
+seq_361731_x143 ......................................................................ucaccgggAgaaaauucgcaug...................	1
+seq_375874_x9   ......................................................................ucaccgggugaaaauucgcaCg...................	1
+seq_378088_x1   ......................................................................ucaccgggugaaaauucNcaug...................	1
+seq_373588_x20  ......................................................................ucaccgggugaaaauucgcUug...................	1
+seq_377851_x1   ......................................................................Ncaccgggugaaaauucgcaug...................	1
+seq_373548_x20  ......................................................................ucaccggCugaaaauucgcaug...................	1
+seq_370128_x47  ......................................................................ucaccgggugCaaauucgcaug...................	1
+seq_374119_x18  ......................................................................ucaccgggugaaaauucgUaug...................	1
+seq_373060_x24  ......................................................................ucaccgAgugaaaauucgcaug...................	1
+seq_373443_x21  ......................................................................ucaGcgggugaaaauucgcaug...................	1
+seq_374627_x15  ......................................................................ucaccggguAaaaauucgcaug...................	1
+seq_374973_x13  ......................................................................ucaccgggugaUaauucgcaug...................	1
+seq_373400_x22  ......................................................................ucaccgggugaaaauucgcCug...................	1
+seq_372577_x27  ......................................................................ucaccgggugaaaauucAcaug...................	1
+seq_375505_x10  ......................................................................uNaccgggugaaaauucgcaug...................	1
+seq_368739_x66  ......................................................................ucaccgggugaaaauucUcaug...................	1
+seq_376703_x5   ......................................................................ucaccgggugaaUauucgcaug...................	1
+seq_345948_x316 ......................................................................ucaccgggugaaaauucgcauU...................	1
+seq_373290_x22  ......................................................................ucaccgggugaaaauuNgcaug...................	1
+seq_376062_x8   ......................................................................ucacGgggugaaaauucgcaug...................	1
+seq_376353_x6   ......................................................................ucGccgggugaaaauucgcaug...................	1
+seq_371653_x34  ......................................................................ucaccgggugaaaauucgcauA...................	1
+seq_375748_x9   ......................................................................Ccaccgggugaaaauucgcaug...................	1
+seq_373628_x20  ......................................................................ucaccUggugaaaauucgcaug...................	1
+seq_377581_x2   ......................................................................ucaccgggugaaaGuucgcaug...................	1
+seq_351036_x251 ......................................................................ucaccgggGgaaaauucgcaug...................	1
+seq_376110_x8   ......................................................................ucaccgggugaaaauGcgcaug...................	1
+seq_376218_x7   ......................................................................Acaccgggugaaaauucgcaug...................	1
+seq_377357_x2   ......................................................................ucaNcgggugaaaauucgcaug...................	1
+seq_375136_x12  ......................................................................ucaccgggugaaaauCcgcaug...................	1
+seq_366148_x95  ......................................................................ucaccgggugaaaauuAgcaug...................	1
+seq_374895_x13  ......................................................................ucaccgggugaaaauucCcaug...................	1
+seq_374701_x14  ......................................................................ucaccgggugaaaauuGgcaug...................	1
+seq_375475_x10  ......................................................................ucCccgggugaaaauucgcaug...................	1
+seq_371985_x32  ......................................................................ucaccgggugGaaauucgcaug...................	1
+seq_372353_x29  ......................................................................uUaccgggugaaaauucgcaug...................	1
+seq_368673_x66  ......................................................................ucaccgCgugaaaauucgcaug...................	1
+seq_372382_x29  ......................................................................ucacUgggugaaaauucgcaug...................	1
+seq_373785_x19  ......................................................................ucaccggAugaaaauucgcaug...................	1
+seq_266019_x11571......................................................................ucaccgggugaaaauucgcaug...................	0
+seq_372234_x30  ......................................................................ucaccgggugaaaauuUgcaug...................	1
+seq_373842_x19  ......................................................................ucaccgggugaaaauucgAaug...................	1
+seq_375655_x10  ......................................................................ucaccgggugaaaCuucgcaug...................	1
+seq_375998_x8   ......................................................................ucaccgggugaaaauucgcGug...................	1
+seq_376281_x6   ......................................................................ucaccgggugaaaauucgcaAg...................	1
+seq_375208_x12  ......................................................................ucaccggguCaaaauucgcaug...................	1
+seq_376141_x7   ......................................................................ucaccgggugaaaauAcgcaug...................	1
+seq_375645_x10  ......................................................................ucaccCggugaaaauucgcaug...................	1
+seq_372865_x25  ......................................................................ucaccgggugUaaauucgcaug...................	1
+seq_367656_x78  ......................................................................ucaccgggugaaNauucgcaug...................	1
+seq_375064_x12  ......................................................................ucaccgggugaGaauucgcaug...................	1
+seq_375605_x10  ......................................................................ucaccgggugaaaaGucgcaug...................	1
+seq_374391_x16  ......................................................................ucaUcgggugaaaauucgcaug...................	1
+seq_378049_x1   ......................................................................ucaccggNugaaaauucgcaug...................	1
+seq_375297_x11  ......................................................................ucaccgggugaaaaCucgcaug...................	1
+seq_375425_x10  ......................................................................ucaccgggugaaaaAucgcaug...................	1
+seq_372685_x26  ......................................................................uAaccgggugaaaauucgcaug...................	1
+seq_369431_x59  ......................................................................ucaAcgggugaaaauucgcaug...................	1
+seq_375051_x13  ......................................................................ucaccggguUaaaauucgcaug...................	1
+seq_375495_x10  ......................................................................ucaccggUugaaaauucgcaug...................	1
+seq_374551_x16  ......................................................................ucaccgggugaaGauucgcaug...................	1
+seq_374687_x14  ......................................................................uGaccgggugaaaauucgcaug...................	1
+seq_377349_x2   ......................................................................ucaccgggNgaaaauucgcaug...................	1
+seq_374799_x14  ......................................................................ucaccgggugaaaauucgNaug...................	1
+seq_371444_x36  ......................................................................ucaccgggugaaaauucgcaGg...................	1
+seq_375712_x9   ......................................................................ucaccgUgugaaaauucgcaug...................	1
+cel-miR-36      ......................................................................ucaccgggugaaaauucgcaug...................	0
+seq_374258_x17  ......................................................................ucaccgggugaaaUuucgcaug...................	1
+seq_378058_x1   ......................................................................ucaccgggugaaaauucgcaGgg..................	1
+seq_375635_x10  ......................................................................ucaccgggugaaaauucgcaugA..................	1
+seq_377329_x2   ......................................................................ucaccgggugaaaauucgcaugC..................	1
+seq_371408_x36  ......................................................................ucaccgggugaaaauucgcaugU..................	1
+seq_378065_x1   ......................................................................ucaccgggugaaaauucgcauggC.................	1
+seq_377890_x1   .......................................................................caccgggugaaaCuucgcaug...................	1
+seq_377471_x2   .......................................................................caccgggGgaaaauucgcaug...................	1
+seq_377827_x1   .......................................................................cacUgggugaaaauucgcaug...................	1
+seq_377073_x3   .......................................................................caccgggugaaaauucgcaug...................	0
+seq_378145_x1   ........................................................................accgggugaaaauucgca.....................	0
+seq_377103_x3   ........................................................................accgggugaaaauucgcau....................	0
+seq_378119_x1   ........................................................................accgggugaaaauucgcaCg...................	1
+seq_378255_x1   ........................................................................accggAugaaaauucgcaug...................	1
+seq_377693_x2   ........................................................................accgggugaaaauucUcaug...................	1
+seq_377743_x2   ........................................................................accCggugaaaauucgcaug...................	1
+seq_378045_x1   ........................................................................accgggugaaaaAucgcaug...................	1
+seq_377351_x2   ........................................................................accggguCaaaauucgcaug...................	1
+seq_377791_x1   ........................................................................accgggugaaaauucgcauC...................	1
+seq_378159_x1   ........................................................................acUgggugaaaauucgcaug...................	1
+seq_365235_x104 ........................................................................accgggugaaaauucgcaug...................	0
+seq_377765_x1   ........................................................................accgggugaaaauucCcaug...................	1
+seq_377365_x2   ........................................................................accgggugaaaauuAgcaug...................	1
+seq_378121_x1   ........................................................................accgggCgaaaauucgcaug...................	1
+seq_377641_x2   ........................................................................accgggugaaaauGcgcaug...................	1
+seq_378264_x1   ........................................................................accgAgugaaaauucgcaug...................	1
+seq_378094_x1   ........................................................................accgggAgaaaauucgcaug...................	1
+seq_377669_x2   ........................................................................accgggugaaaauucgcauU...................	1
+seq_376819_x4   ........................................................................accgggGgaaaauucgcaug...................	1
+seq_377755_x1   ..........................................................................cgggugaaaauucgcaug...................	0
+
+
+
+>chrII:11534525-11540624_15
+score total		        1978.6
+score for star read(s)	           3.9
+score for read counts	        1968.1
+score for mfe		             2
+score for randfold	           1.6
+score for cons. seed	             3
+miRNA with same seed	    cbr-miR-35
+total read count	          3872
+mature read count	          3014
+loop read count		             1
+star read count		           857
+exp             ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
+obs             ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff
+pri_seq         auuauugaauuccugauauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucuggugucuccgaac
+pri_struct      .........(((..((.(((((.((((((.(((((((((((.((((((.((((.((((....)))).)))).)))))))).))))))))).))))))))))).)).))).	#MM
+seq_377766_x1   .............................cagcugauuucgucuugguaau...........................................................	0
+seq_377852_x1   .............................Aagcugauuucgucuugguaau...........................................................	1
+seq_376455_x6   .............................cagcugauuucgucuugguaaua..........................................................	0
+seq_376102_x8   ..............................agcugauuucgucuuggua.............................................................	0
+seq_377932_x1   ..............................agcugCuuucgucuugguaa............................................................	1
+seq_377781_x1   ..............................agcugauuucgucuugUuaa............................................................	1
+seq_377876_x1   ..............................agcugUuuucgucuugguaa............................................................	1
+seq_374292_x17  ..............................agcugauuucgucuugguaa............................................................	0
+seq_377750_x1   ..............................agcugauuucgucuugguCa............................................................	1
+seq_377792_x1   ..............................agAugauuucgucuugguaau...........................................................	1
+seq_377145_x3   ..............................Ugcugauuucgucuugguaau...........................................................	1
+seq_370030_x50  ..............................agcugauuucgucuugguaau...........................................................	0
+seq_378023_x1   ..............................agcugauuucgucuugguUau...........................................................	1
+seq_377863_x1   ..............................agcugauuAcgucuugguaau...........................................................	1
+seq_377940_x1   ..............................agcugauuucgucuugAuaau...........................................................	1
+seq_377894_x1   ..............................agcugauuucguAuugguaau...........................................................	1
+seq_377493_x2   ..............................aCcugauuucgucuugguaaua..........................................................	1
+seq_377061_x3   ..............................agcugauuucgucuuggAaaua..........................................................	1
+seq_377856_x1   ..............................agcugauuucgCcuugguaaua..........................................................	1
+seq_378117_x1   ..............................agcugauuucgAcuugguaaua..........................................................	1
+seq_376371_x6   ..............................agcugauuucgucuuUguaaua..........................................................	1
+seq_377070_x3   ..............................agcugauuuAgucuugguaaua..........................................................	1
+seq_375950_x8   ..............................agAugauuucgucuugguaaua..........................................................	1
+seq_376148_x7   ..............................agcugUuuucgucuugguaaua..........................................................	1
+seq_376533_x5   ..............................Ugcugauuucgucuugguaaua..........................................................	1
+seq_377313_x3   ..............................agcugauuuUgucuugguaaua..........................................................	1
+seq_378077_x1   ..............................agcugaCuucgucuugguaaua..........................................................	1
+seq_378084_x1   ..............................aAcugauuucgucuugguaaua..........................................................	1
+seq_377902_x1   ..............................agcugauuucguGuugguaaua..........................................................	1
+seq_377151_x3   ..............................agcuAauuucgucuugguaaua..........................................................	1
+seq_378275_x1   ..............................agcCgauuucgucuugguaaua..........................................................	1
+seq_378290_x1   ..............................agcugauuucgucuugguaGua..........................................................	1
+seq_377663_x2   ..............................agcugGuuucgucuugguaaua..........................................................	1
+seq_377166_x3   ..............................agcugauuucgucuugguaUua..........................................................	1
+seq_378017_x1   ..............................agcugCuuucgucuugguaaua..........................................................	1
+seq_376979_x4   ..............................agUugauuucgucuugguaaua..........................................................	1
+seq_376907_x4   ..............................agcugauuucgucuugguaauU..........................................................	1
+seq_377363_x2   ..............................agcugaGuucgucuugguaaua..........................................................	1
+seq_377031_x3   ..............................agcugauuucgucuugguaauC..........................................................	1
+seq_377525_x2   ..............................agcugauuucguAuugguaaua..........................................................	1
+seq_377085_x3   ..............................agcugauuucgGcuugguaaua..........................................................	1
+seq_376739_x4   ..............................agcugauuucgucuuggCaaua..........................................................	1
+seq_377274_x3   ..............................agcugauuucguUuugguaaua..........................................................	1
+seq_377389_x2   ..............................agcugauuucgucuuCguaaua..........................................................	1
+seq_376578_x5   ..............................agcugauuucgucuuggGaaua..........................................................	1
+seq_377665_x2   ..............................agcugauuucgucuugguCaua..........................................................	1
+seq_378137_x1   ..............................agcugauuucAucuugguaaua..........................................................	1
+seq_337222_x632 ..............................agcugauuucgucuugguaaua..........................................................	0
+seq_377205_x3   ..............................agcugauuucgucuugCuaaua..........................................................	1
+seq_378202_x1   ..............................agcugauuucUucuugguaaua..........................................................	1
+seq_375455_x10  ..............................agcugauuucgucuugUuaaua..........................................................	1
+seq_373956_x19  ..............................agcugauuucgucuugguaauaU.........................................................	1
+seq_376317_x6   ..............................agcugauuucgucuugguaauaa.........................................................	0
+seq_377935_x1   ..............................agcugauuucguGuugguaauaa.........................................................	1
+seq_377919_x1   ..............................agcuAauuucgucuugguaauaa.........................................................	1
+seq_378228_x1   ..............................agcugauuucgucuugguaauaC.........................................................	1
+seq_378031_x1   ....................................................agcucgucauugagauua........................................	0
+seq_377831_x1   ....................................................................uGucaccggguguaaaucagcu....................	1
+seq_377319_x3   ....................................................................Aaucaccggguguaaaucagcuug..................	1
+seq_377509_x2   .....................................................................Cucaccggguguaaaucagcuu...................	1
+seq_378082_x1   .....................................................................Cucaccggguguaaaucagcuug..................	1
+seq_377100_x3   .....................................................................aucaccggguguaaaucagcuug..................	0
+seq_376693_x5   ......................................................................ucaccggguguaaaucag......................	0
+seq_377359_x2   ......................................................................ucaccgggGguaaaucagc.....................	1
+seq_375286_x11  ......................................................................ucaccggguguaaaucagc.....................	0
+seq_377929_x1   ......................................................................ucaccggguguaaauAagc.....................	1
+seq_378332_x1   ......................................................................ucaccggguguaaaucaUc.....................	1
+seq_378328_x1   ......................................................................ucaGcggguguaaaucagc.....................	1
+seq_377979_x1   ......................................................................ucaccggguguaNaucagc.....................	1
+seq_377361_x2   ......................................................................ucacAggguguaaaucagcu....................	1
+seq_373312_x22  ......................................................................ucaccggguguaaaucagcu....................	0
+seq_378183_x1   ......................................................................ucaccggguguaNaucagcu....................	1
+seq_378120_x1   ......................................................................ucaccggguguaaaucagcG....................	1
+seq_377981_x1   ......................................................................ucaccggguguaUaucagcu....................	1
+seq_378256_x1   ......................................................................ucaccggguguaaaucaAcu....................	1
+seq_377995_x1   ......................................................................Gcaccggguguaaaucagcuu...................	1
+seq_378260_x1   ......................................................................ucaccggguguaaauUagcuu...................	1
+seq_378301_x1   ......................................................................ucaccgggCguaaaucagcuu...................	1
+seq_378061_x1   ......................................................................uGaccggguguaaaucagcuu...................	1
+seq_377812_x1   ......................................................................ucaccggguguaaaAcagcuu...................	1
+seq_377776_x1   ......................................................................ucaccgCguguaaaucagcuu...................	1
+seq_377244_x3   ......................................................................ucaccggguguaaaucagcuA...................	1
+seq_366974_x88  ......................................................................ucaccggguguaaaucagcuu...................	0
+seq_377841_x1   ......................................................................ucaccgggugCaaaucagcuu...................	1
+seq_378297_x1   ......................................................................ucaccgggAguaaaucagcuu...................	1
+seq_377914_x1   ......................................................................ucaccggguguaaaucagcCu...................	1
+seq_376558_x5   ......................................................................ucaccggguguaCaucagcuu...................	1
+seq_377989_x1   ......................................................................ucaccggguguaaaCcagcuu...................	1
+seq_376743_x4   ......................................................................ucacAggguguaaaucagcuu...................	1
+seq_377778_x1   ......................................................................ucaccggguguaaaucGgcuu...................	1
+seq_377753_x1   ......................................................................ucaccggguguaaaucaUcuu...................	1
+seq_376648_x5   ......................................................................ucaccggguguaaaucGgcuug..................	1
+seq_377707_x2   ......................................................................ucaccggguguaGaucagcuug..................	1
+seq_377978_x1   ......................................................................ucaccCgguguaaaucagcuug..................	1
+cel-miR-39      ......................................................................ucaccggguguaaaucagcuug..................	0
+seq_378262_x1   ......................................................................ucaccggguguaUaucagcuug..................	1
+seq_376628_x5   ......................................................................ucaccggguguaaaucagAuug..................	1
+seq_377259_x3   ......................................................................ucaccggguguaaaucUgcuug..................	1
+seq_377503_x2   ......................................................................ucaccggguAuaaaucagcuug..................	1
+seq_374309_x17  ......................................................................ucaccgggCguaaaucagcuug..................	1
+seq_377495_x2   ......................................................................ucaccggguguCaaucagcuug..................	1
+seq_376118_x8   ......................................................................ucaccggguguaaaucaCcuug..................	1
+seq_374326_x17  ......................................................................ucaccggguguaaauUagcuug..................	1
+seq_376771_x4   ......................................................................ucaUcggguguaaaucagcuug..................	1
+seq_376509_x6   ......................................................................ucaccggUuguaaaucagcuug..................	1
+seq_377631_x2   ......................................................................ucCccggguguaaaucagcuug..................	1
+seq_374642_x15  ......................................................................ucaccggguguaaauAagcuug..................	1
+seq_377433_x2   ......................................................................uGaccggguguaaaucagcuug..................	1
+seq_373880_x19  ......................................................................ucaccgggAguaaaucagcuug..................	1
+seq_375942_x8   ......................................................................ucaccgCguguaaaucagcuug..................	1
+seq_374855_x14  ......................................................................ucaccgggugGaaaucagcuug..................	1
+seq_377094_x3   ......................................................................uNaccggguguaaaucagcuug..................	1
+seq_373766_x19  ......................................................................ucaccgggugCaaaucagcuug..................	1
+seq_378234_x1   ......................................................................ucaccggguUuaaaucagcuug..................	1
+seq_376437_x6   ......................................................................ucaccggguguaaaucagcuGg..................	1
+seq_376995_x4   ......................................................................ucaccgAguguaaaucagcuug..................	1
+seq_377591_x2   ......................................................................ucaccggguCuaaaucagcuug..................	1
+seq_377217_x3   ......................................................................ucaccgggugAaaaucagcuug..................	1
+seq_377395_x2   ......................................................................ucaccggguguGaaucagcuug..................	1
+seq_377545_x2   ......................................................................ucaccggguguaaaucNgcuug..................	1
+seq_376899_x4   ......................................................................ucaccggguguaaaCcagcuug..................	1
+seq_378172_x1   ......................................................................ucaccggNuguaaaucagcuug..................	1
+seq_354255_x214 ......................................................................ucaccggguguaaaucagcuuU..................	1
+seq_377808_x1   ......................................................................ucaccggguguaaaucagGuug..................	1
+seq_376311_x6   ......................................................................ucaccggguguaCaucagcuug..................	1
+seq_377741_x2   ......................................................................ucaccggguguaaaucagUuug..................	1
+seq_375445_x10  ......................................................................ucaccggguguaNaucagcuug..................	1
+seq_378186_x1   ......................................................................ucaNcggguguaaaucagcuug..................	1
+seq_377920_x1   ......................................................................ucaccggguguaaaucagcuAg..................	1
+seq_375918_x8   ......................................................................uUaccggguguaaaucagcuug..................	1
+seq_375555_x10  ......................................................................ucaccggguguaaaucaUcuug..................	1
+seq_377345_x2   ......................................................................ucaccggguguaaCucagcuug..................	1
+seq_376548_x5   ......................................................................ucaccggguguaaaGcagcuug..................	1
+seq_374597_x15  ......................................................................ucaccggguguaaaucagcuuC..................	1
+seq_376891_x4   ......................................................................ucaccggguguaaaucagcGug..................	1
+seq_311369_x2128......................................................................ucaccggguguaaaucagcuug..................	0
+seq_378047_x1   ......................................................................ucaccggguguaaauGagcuug..................	1
+seq_375757_x9   ......................................................................ucaccggguguaaaucCgcuug..................	1
+seq_376377_x6   ......................................................................ucaccUgguguaaaucagcuug..................	1
+seq_376779_x4   ......................................................................ucaccAgguguaaaucagcuug..................	1
+seq_377199_x3   ......................................................................ucaccgUguguaaaucagcuug..................	1
+seq_376022_x8   ......................................................................ucaAcggguguaaaucagcuug..................	1
+seq_372142_x31  ......................................................................ucacAggguguaaaucagcuug..................	1
+seq_378127_x1   ......................................................................ucaccggguguaaaucagcCug..................	1
+seq_377375_x2   ......................................................................ucaccggguguaaaucaAcuug..................	1
+seq_377727_x2   ......................................................................ucaccggCuguaaaucagcuug..................	1
+seq_378248_x1   ......................................................................uAaccggguguaaaucagcuug..................	1
+seq_377573_x2   ......................................................................ucaGcggguguaaaucagcuug..................	1
+seq_378181_x1   ......................................................................Acaccggguguaaaucagcuug..................	1
+seq_376815_x4   ......................................................................ucaccggguguaaUucagcuug..................	1
+seq_377238_x3   ......................................................................ucacUggguguaaaucagcuug..................	1
+seq_375847_x9   ......................................................................Gcaccggguguaaaucagcuug..................	1
+seq_377483_x2   ......................................................................ucaccggguguaaGucagcuug..................	1
+seq_377697_x2   ......................................................................ucaccggAuguaaaucagcuug..................	1
+seq_377880_x1   ......................................................................ucaccggguguUaaucagcuug..................	1
+seq_372658_x27  ......................................................................ucaccgggGguaaaucagcuug..................	1
+seq_371821_x33  ......................................................................ucaccggguguaaaucagcuuA..................	1
+seq_377399_x2   ......................................................................ucaccggguguaaaucagcAug..................	1
+seq_376991_x4   ......................................................................ucaccggguguaaaucagcuugC.................	1
+seq_376683_x5   ......................................................................ucaccggguguaaaucagcuugg.................	0
+seq_375196_x12  ......................................................................ucaccggguguaaaucagcuugA.................	1
+seq_372080_x31  ......................................................................ucaccggguguaaaucagcuugU.................	1
+seq_377849_x1   ......................................................................ucaccggguguaaaucagcuuggc................	0
+seq_377884_x1   ......................................................................ucaccggguguaaaucagcuuggcG...............	1
+seq_377597_x2   .......................................................................caccggguguaaaucagcuug..................	0
+seq_377825_x1   .......................................................................caccggguguaaaucagcuuU..................	1
+seq_377621_x2   ........................................................................accggguguaaaucagcuuU..................	1
+seq_378024_x1   ........................................................................aAcggguguaaaucagcuug..................	1
+seq_377846_x1   ........................................................................accgggGguaaaucagcuug..................	1
+seq_378292_x1   ........................................................................accgggCguaaaucagcuug..................	1
+seq_377705_x2   ........................................................................accggguguaaaucagcuuA..................	1
+seq_377873_x1   ........................................................................accggguguaaaucUgcuug..................	1
+seq_371887_x33  ........................................................................accggguguaaaucagcuug..................	0
+seq_378179_x1   ........................................................................accggguguaaaucagcuNg..................	1
+seq_378219_x1   ........................................................................accggguguaaaucagcuugUc................	1
+seq_377870_x1   .........................................................................ccggguguaaaucagcuuA..................	1
+
+
+
+>chrII:11534525-11540624_13
+score total		           5.5
+score for star read(s)	          -1.3
+score for read counts	             0
+score for mfe		           2.2
+score for randfold	           1.6
+score for cons. seed	             3
+miRNA with same seed	    cbr-miR-35
+total read count	          2140
+mature read count	          2132
+loop read count		             8
+star read count		             0
+exp             fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff
+pri_seq         ucgugguuucucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucauucc
+pri_struct      .............((((((((((((((((((((((((((..(.((((((((..((........))...)))))))).)..)))))))))))))))))))).).)))))...	#MM
+seq_378012_x1   .........cucugugaUccagguccugu..................................................................................	1
+seq_376030_x8   ...................................................acgcauccaaaagucucua.........................................	0
+seq_377775_x1   .....................................................................aucaccgggagaaaaacuggag....................	0
+seq_378130_x1   .....................................................................aucaccgggagUaaaacuggagu...................	1
+seq_375088_x12  .....................................................................aucaccgggagaaaaacuggagu...................	0
+seq_378001_x1   .....................................................................aucaccggCagaaaaacuggagu...................	1
+seq_376947_x4   .....................................................................Cucaccgggagaaaaacuggagu...................	1
+seq_378196_x1   .....................................................................aucaccgggagaaCaacuggagu...................	1
+seq_377529_x2   .....................................................................aucaccgggagaaaaacuggaguU..................	1
+seq_377895_x1   .....................................................................aucaccgggagaaaaacuggaguaA.................	1
+seq_377879_x1   ......................................................................ucaccgggUgaaaaacug.......................	1
+seq_377877_x1   ......................................................................ucaccgggagaaaaacug.......................	0
+seq_376747_x4   ......................................................................ucaccgggagaaaaacugga.....................	0
+seq_377819_x1   ......................................................................ucaccgggagaaaaacuggaU....................	1
+seq_377523_x2   ......................................................................ucaccggCagaaaaacuggag....................	1
+seq_377211_x3   ......................................................................ucaccgggagGaaaacuggag....................	1
+seq_378171_x1   ......................................................................ucaccgggagaaUaacuggag....................	1
+seq_377815_x1   ......................................................................ucaccgggagaaaUacuggag....................	1
+seq_377425_x2   ......................................................................ucacAgggagaaaaacuggag....................	1
+seq_378277_x1   ......................................................................ucaccgggagaaaaaUuggag....................	1
+seq_378014_x1   ......................................................................ucaccgggagaaaaaGuggag....................	1
+seq_376859_x4   ......................................................................ucaccgggagaaaaacuggUg....................	1
+seq_377517_x2   ......................................................................ucaccgggagCaaaacuggag....................	1
+seq_378305_x1   ......................................................................ucaAcgggagaaaaacuggag....................	1
+seq_377924_x1   ......................................................................ucaccgggagUaaaacuggag....................	1
+seq_377603_x2   ......................................................................ucaccgggagaaaaacuggaC....................	1
+seq_378208_x1   ......................................................................ucaccgggagaaaaacAggag....................	1
+seq_377178_x3   ......................................................................ucaccgggagaaaaacugCag....................	1
+seq_377886_x1   ......................................................................ucaccgggagaaCaacuggag....................	1
+seq_361587_x144 ......................................................................ucaccgggagaaaaacuggag....................	0
+seq_377571_x2   ......................................................................ucaccgggUgaaaaacuggag....................	1
+seq_376054_x8   ......................................................................ucaccgggagGaaaacuggagu...................	1
+seq_377868_x1   ......................................................................ucaAcgggagaaaaacuggagu...................	1
+seq_377229_x3   ......................................................................ucaccggAagaaaaacuggagu...................	1
+seq_377551_x2   ......................................................................ucaccgggagaaNaacuggagu...................	1
+seq_377429_x2   ......................................................................ucaccggCagaaaaacuggagu...................	1
+seq_376678_x5   ......................................................................ucaccgggagaaaaacuCgagu...................	1
+seq_377798_x1   ......................................................................ucaccgggagaaaaaNuggagu...................	1
+seq_374083_x18  ......................................................................ucaccgggagaaaaacuggUgu...................	1
+seq_375485_x10  ......................................................................ucaccgggagCaaaacuggagu...................	1
+seq_377874_x1   ......................................................................ucaccgggaAaaaaacuggagu...................	1
+seq_376673_x5   ......................................................................uAaccgggagaaaaacuggagu...................	1
+seq_377465_x2   ......................................................................ucaccgggagaaaaacAggagu...................	1
+seq_376863_x4   ......................................................................ucaccgggagaaaaacugUagu...................	1
+seq_377214_x3   ......................................................................uNaccgggagaaaaacuggagu...................	1
+seq_377391_x2   ......................................................................ucaccgggagaaaaacuggCgu...................	1
+seq_320610_x1349......................................................................ucaccgggagaaaaacuggagu...................	0
+seq_378162_x1   ......................................................................ucaccgggGgaaaaacuggagu...................	1
+seq_377945_x1   ......................................................................ucaccgggagaCaaacuggagu...................	1
+seq_378308_x1   ......................................................................ucaUcgggagaaaaacuggagu...................	1
+seq_377725_x2   ......................................................................Ccaccgggagaaaaacuggagu...................	1
+seq_378032_x1   ......................................................................ucaccgggagaaaUacuggagu...................	1
+seq_376211_x7   ......................................................................ucaccgggUgaaaaacuggagu...................	1
+seq_377906_x1   ......................................................................ucaccgggagaaaaacuggaUu...................	1
+seq_378174_x1   ......................................................................ucaccgggagaaaaacuggGgu...................	1
+seq_377339_x2   ......................................................................ucaccgggCgaaaaacuggagu...................	1
+seq_374190_x17  ......................................................................ucaccgggagaaaaacuggagA...................	1
+seq_376999_x4   ......................................................................ucaGcgggagaaaaacuggagu...................	1
+seq_371854_x33  ......................................................................ucaccgggagaaaaacuggagC...................	1
+seq_377739_x2   ......................................................................ucaccgggagaGaaacuggagu...................	1
+seq_376963_x4   ......................................................................ucaccUggagaaaaacuggagu...................	1
+seq_377960_x1   ......................................................................ucaccgggagaaaCacuggagu...................	1
+seq_376718_x5   ......................................................................ucaccgggagaaaaacuggaCu...................	1
+seq_378215_x1   ......................................................................ucaccgggagaaaaacugNagu...................	1
+seq_377196_x3   ......................................................................ucacUgggagaaaaacuggagu...................	1
+seq_378253_x1   ......................................................................ucaccgggagaaaaaGuggagu...................	1
+seq_377481_x2   ......................................................................ucaccgggagaaaaCcuggagu...................	1
+seq_377655_x2   ......................................................................ucaccgggagaaaaacNggagu...................	1
+seq_377842_x1   ......................................................................ucaccgggagaaGaacuggagu...................	1
+seq_377733_x2   ......................................................................ucaccgggagaaCaacuggagu...................	1
+seq_376975_x4   ......................................................................ucaccgggagaaaaacuAgagu...................	1
+seq_375739_x9   ......................................................................ucaccgggagaaaaaAuggagu...................	1
+seq_378059_x1   ......................................................................ucaccgggagaUaaacuggagu...................	1
+seq_376875_x4   ......................................................................ucaccgggagaaaaacuUgagu...................	1
+seq_377567_x2   ......................................................................ucCccgggagaaaaacuggagu...................	1
+seq_377208_x3   ......................................................................ucaccgggagaaaaacugAagu...................	1
+seq_378085_x1   ......................................................................ucaccCggagaaaaacuggagu...................	1
+seq_377379_x2   ......................................................................ucaccgggagaaaGacuggagu...................	1
+seq_378242_x1   ......................................................................ucaccgggaUaaaaacuggagu...................	1
+seq_378086_x1   ......................................................................ucaccAggagaaaaacuggagu...................	1
+seq_378041_x1   ......................................................................ucaccgggagaaaaUcuggagu...................	1
+seq_377901_x1   ......................................................................uGaccgggagaaaaacuggagu...................	1
+seq_377719_x2   ......................................................................Gcaccgggagaaaaacuggagu...................	1
+seq_378268_x1   ......................................................................ucaccgggaCaaaaacuggagu...................	1
+seq_377453_x2   ......................................................................ucaccgAgagaaaaacuggagu...................	1
+seq_373334_x22  ......................................................................ucaccgggagaaaaacugCagu...................	1
+seq_375160_x12  ......................................................................ucaccgggagaaaaaUuggagu...................	1
+seq_373422_x21  ......................................................................ucacAgggagaaaaacuggagu...................	1
+seq_375112_x12  ......................................................................ucaccgggagaaaaacuggagG...................	1
+cel-miR-38      ......................................................................ucaccgggagaaaaacuggagu...................	0
+seq_376038_x8   ......................................................................ucaccgggagUaaaacuggagu...................	1
+seq_377701_x2   ......................................................................uUaccgggagaaaaacuggagu...................	1
+seq_376293_x6   ......................................................................ucaccgggagaaaaacGggagu...................	1
+seq_377106_x3   ......................................................................ucaccgCgagaaaaacuggagu...................	1
+seq_377695_x2   ......................................................................ucaccgggagaaaaacuggUgua..................	1
+seq_377892_x1   ......................................................................ucaccgggagCaaaacuggagua..................	1
+seq_378063_x1   ......................................................................ucaccgggagaaaaacuggagAa..................	1
+seq_377013_x3   ......................................................................ucaccgggagaaaaacuggagCa..................	1
+seq_378122_x1   ......................................................................uGaccgggagaaaaacuggagua..................	1
+seq_378075_x1   ......................................................................ucaccgggagaaaaacuggaguG..................	1
+seq_352252_x230 ......................................................................ucaccgggagaaaaacuggaguU..................	1
+seq_373708_x20  ......................................................................ucaccgggagaaaaacuggagua..................	0
+seq_374947_x13  ......................................................................ucaccgggagaaaaacuggaguaA.................	1
+seq_378157_x1   ......................................................................ucaccgggagaaaaacuggaguUg.................	1
+seq_377403_x2   .......................................................................caccgggagaaaaacuggagu...................	0
+seq_377136_x3   ........................................................................accgggagaaaaacuggag....................	0
+seq_378022_x1   ........................................................................accgggagaaaaacuggagC...................	1
+seq_375395_x10  ........................................................................accgggagaaaaacuggagu...................	0
+seq_378209_x1   ........................................................................accgggagaaaaacuggagA...................	1
+seq_378318_x1   ........................................................................accgggagaaaaacugAagu...................	1
+seq_378282_x1   ........................................................................accgggagGaaaacuggagu...................	1
+seq_377867_x1   ........................................................................accgggagCaaaacuggagu...................	1
+seq_377972_x1   ........................................................................accgggagaaaaacGggagu...................	1
+seq_377673_x2   ........................................................................accgggagaaaaacuggaguU..................	1
+seq_377872_x1   ..........................................................................cgggagaaaaacuggagu...................	0
+seq_378055_x1   ..........................................................................cgggagaaaaacuggaguU..................	1
+
+
+
+>chrII:11534525-11540624_19
+score total		          84.4
+score for star read(s)	           3.9
+score for read counts	          77.6
+score for mfe		           1.9
+score for randfold	           1.6
+score for cons. seed	          -0.6
+total read count	           164
+mature read count	            68
+loop read count		             9
+star read count		            87
+exp             ffffffffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSffffffffffffffffffff
+obs             ffffffffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSffffffffffffffffffff
+pri_seq         auuuuuaagugggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccugcucu
+pri_struct      .......((..((..(((..(((((.(((((((((((((((..(((((((.................))))))))))).))))))))))).))))))))..))..)).....	#MM
+seq_378151_x1   ..........................ggugguuuuucucuUcaguga.................................................................	1
+seq_377657_x2   ..........................ggugguuuuucucugcagugau................................................................	0
+seq_378283_x1   ..........................ggGgguuuuucucugcagugaua...............................................................	1
+seq_377938_x1   ..........................ggugguuuuucucugUagugaua...............................................................	1
+seq_378266_x1   ..........................ggugguCuuucucugcagugaua...............................................................	1
+seq_376959_x4   ..........................ggugguuuuucucuUcagugaua...............................................................	1
+seq_377459_x2   ..........................ggugguuuuucucugcagugCua...............................................................	1
+seq_377463_x2   ..........................ggugguuuuuUucugcagugaua...............................................................	1
+seq_370580_x42  ..........................ggugguuuuucucugcagugaua...............................................................	0
+seq_378066_x1   ..........................ggugguuuuucucugcagCgaua...............................................................	1
+seq_378054_x1   ..........................ggugguuuuucucugcagugauU...............................................................	1
+seq_377637_x2   ..........................ggugguuuuucucugcCgugaua...............................................................	1
+seq_378131_x1   ..........................ggugguuuuucucugcagugauaU..............................................................	1
+seq_378064_x1   ..........................ggugguuuuucucugcagugauag..............................................................	0
+seq_378010_x1   ..........................ggugguuuuucuGugcagugauag..............................................................	1
+seq_377371_x2   ..........................ggugguuuuucucugcagugauaAa.............................................................	1
+seq_377953_x1   ............................ugguuuuucucugcagugaua...............................................................	0
+seq_377801_x1   ............................ugguuuuucucugcagugUua...............................................................	1
+seq_377854_x1   ............................ugguuuuucucugcagugauaga.............................................................	0
+seq_375838_x9   .................................................gauacuucuaacaacucgcua..........................................	0
+seq_377941_x1   ....................................................................uaucaccgggugaaaaaucaccu.....................	0
+seq_378320_x1   .....................................................................aucaccgggugaaaaaucacAu.....................	1
+seq_378280_x1   .....................................................................aucaccggguAaaaaaucaccu.....................	1
+seq_376006_x8   .....................................................................aucaccgggugaaaaaucaccu.....................	0
+seq_376879_x4   .....................................................................aucaccgggugaaaaaucaccuU....................	1
+seq_375615_x10  .....................................................................aucaccgggugaaaaaucaccua....................	0
+seq_378108_x1   .....................................................................aucaccgggGgaaaaaucaccua....................	1
+seq_376851_x4   ......................................................................ucaccgggugaaaaaucaccu.....................	0
+seq_377803_x1   ......................................................................ucaccgggugaaCaaucaccua....................	1
+seq_378243_x1   ......................................................................ucaccgggugaaaGaucaccua....................	1
+seq_378091_x1   ......................................................................ucaccgAgugaaaaaucaccua....................	1
+seq_377871_x1   ......................................................................ucaccgggugaaaaauAaccua....................	1
+seq_377853_x1   ......................................................................uAaccgggugaaaaaucaccua....................	1
+seq_378138_x1   ......................................................................ucaccgggugCaaaaucaccua....................	1
+seq_378123_x1   ......................................................................uUaccgggugaaaaaucaccua....................	1
+seq_377052_x3   ......................................................................ucaccgggGgaaaaaucaccua....................	1
+cel-miR-41      ......................................................................ucaccgggugaaaaaucaccua....................	0
+seq_378249_x1   ......................................................................ucaccgggugaaaaaucaUcua....................	1
+seq_372631_x27  ......................................................................ucaccgggugaaaaaucaccua....................	0
+seq_377820_x1   ......................................................................ucaccAggugaaaaaucaccua....................	1
+seq_377247_x3   ......................................................................ucaccgggugaaaaaucaccuaU...................	1
+seq_377331_x2   ......................................................................ucaccgggugaaaaaucaccuaA...................	1
+seq_377731_x2   .......................................................................caccgggugaaaaaucaccua....................	0
+seq_377439_x2   .......................................................................caccgggugaaaaaucaccuaU...................	1
+seq_377980_x1   ........................................................................accgggCgaaaaaucaccua....................	1
+seq_376395_x6   ........................................................................accgggugaaaaaucaccua....................	0
+seq_378083_x1   .........................................................................ccgggugaaaaaucaccua....................	0
+seq_377991_x1   ..........................................................................cgggugaaaaaucaccua....................	0
+
+
+
diff -r 000000000000 -r eaac585f172a test-data/precursors_ref_this_species.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/precursors_ref_this_species.fa	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,14 @@
+>cel-mir-36
+CACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGA
+>cel-mir-37
+TTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCT
+>cel-mir-38
+TCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCAT
+>cel-mir-39
+TATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTC
+>cel-mir-40
+TCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGT
+>cel-mir-41
+GGGTCCCAGAGACCTTGGTGGTTTTTCTCTGCAGTGATAGATACTTCTAACAACTCGCTATCACCGGGTGAAAAATCACCTAGGTCTGGAGCCTCCT
+>cel-mir-229
+CGCCGGCAATGACACTGGTTATCTTTTCCATCGTGGAATGCCCCCCATTGATTTTTTCCCCTTTTCGGGGGGAAAAAATTGGAAACGAGAAAGGTATCGGGTGTCATAGCCGGCG
diff -r 000000000000 -r eaac585f172a test-data/reads_collapsed.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/reads_collapsed.fa	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,3220 @@
+>seq_0_x149538
+TCACCGGGTGGAAACTAGCAGT
+>seq_149538_x90904
+TCACCGGGTGAACACTTGCAGT
+>seq_240442_x25577
+TCACCGGGTGTACATCAGCTAA
+>seq_266019_x11571
+TCACCGGGTGAAAATTCGCATG
+>seq_277590_x9943
+TCACCGGGTGGAAACTAGCAG
+>seq_287533_x5429
+TCACCGGGTGGAAACTAGCAGTT
+>seq_292962_x4000
+AATGACACTGGTTATCTTTTCCATCG
+>seq_296962_x3796
+TCACCGGGTGAACACTTGCAG
+>seq_300758_x2851
+TCACCGGGTGAACACTTGCAGTT
+>seq_303609_x2808
+TCACCGGGGGGAAACTAGCAGT
+>seq_306417_x2793
+TCACAGGGTGGAAACTAGCAGT
+>seq_309210_x2159
+TCACCGGGTGGAAACTAGCAGTA
+>seq_311369_x2128
+TCACCGGGTGTAAATCAGCTTG
+>seq_313497_x2021
+TCACCGGGTGGAAACTAGCA
+>seq_315518_x1866
+TCACCGGGCGGAAACTAGCAGT
+>seq_317384_x1629
+TCACCGGGAGGAAACTAGCAGT
+>seq_319013_x1597
+TCACAGGGTGAACACTTGCAGT
+>seq_320610_x1349
+TCACCGGGAGAAAAACTGGAGT
+>seq_321959_x1326
+TCACCGGGTGGAAAATAGCAGT
+>seq_323285_x1320
+TCACCGGGGGAACACTTGCAGT
+>seq_324605_x1295
+TCACCGGGTGGANACTAGCAGT
+>seq_325900_x1251
+TCACCGGGTGAACACTTGCAGTA
+>seq_327151_x1237
+TCACCGGGTGAACACTTGCA
+>seq_328388_x1017
+TCACCGGGTGTACATCAGCTA
+>seq_329405_x990
+ACCGGGTGGAAACTAGCAGT
+>seq_330395_x911
+TCACCGGGTGAANACTTGCAGT
+>seq_331306_x853
+TCACCGGGCGAACACTTGCAGT
+>seq_332159_x841
+TCACCGGGAGAACACTTGCAGT
+>seq_333000_x757
+TCACCGCGTGGAAACTAGCAGT
+>seq_333757_x746
+ACCGGGTGAACACTTGCAGT
+>seq_334503_x690
+TCACCGGGTGGAAACTAGCAGC
+>seq_335193_x686
+TCACCGGGTGAAAACTTGCAGT
+>seq_335879_x674
+TCACCGCGTGAACACTTGCAGT
+>seq_336553_x669
+TCACCGGGTGGAAACTAGCAGA
+>seq_337222_x632
+AGCTGATTTCGTCTTGGTAATA
+>seq_337854_x604
+TCAACGGGTGGAAACTAGCAGT
+>seq_338458_x598
+TCACCGGGTGGAAACTATCAGT
+>seq_339056_x557
+TCACCGGGTGGAAACTAGCAGG
+>seq_339613_x541
+TCACCGGGTGTACATCAGCTAAA
+>seq_340154_x508
+TCACCGGGTGAACACTGGCAGT
+>seq_340662_x508
+TCACCGGGTGGACACTAGCAGT
+>seq_341170_x448
+TCACCGGGTGAACACTTTCAGT
+>seq_341618_x427
+TCACCGGGTGAACAATTGCAGT
+>seq_342045_x391
+TCACCGGGTGAACACTTGCCGT
+>seq_342436_x389
+TCACCGGGTGGAAACTTGCAGT
+>seq_342825_x384
+TCACAGGGTGTACATCAGCTAA
+>seq_343209_x360
+TCACCGGGTGAAAACTAGCAGT
+>seq_343569_x355
+TCACCGGGTGTACATCAGCTAAT
+>seq_343924_x352
+TCACCGGGTGCAAACTAGCAGT
+>seq_344276_x345
+TCACCGGGTGGAGACTAGCAGT
+>seq_344621_x340
+TCAACGGGTGAACACTTGCAGT
+>seq_344961_x338
+TCACCGGGTGTACATCAGCTAT
+>seq_345299_x327
+TCACCGGGTGAACACTTGCTGT
+>seq_345626_x322
+TCACCGGGTGGAAATTAGCAGT
+>seq_345948_x316
+TCACCGGGTGAAAATTCGCATT
+>seq_346264_x309
+TCACCGGGTGGAAACTAGCCGT
+>seq_346573_x304
+TCACCGGGTGGTAACTAGCAGT
+>seq_346877_x304
+TCACCGGGTGGAAACTAGCTGT
+>seq_347181_x298
+TCACAGGGTGAAAATTCGCATG
+>seq_347479_x287
+TCACCGGGGGTACATCAGCTAA
+>seq_347766_x287
+TAACCGGGTGGAAACTAGCAGT
+>seq_348053_x285
+CACCGGGTGAACACTTGCAGT
+>seq_348338_x283
+TCACCGGGTGGAAACTAGTAGT
+>seq_348621_x282
+TCACCGGGTGGAAACTCGCAGT
+>seq_348903_x271
+TCACCGGGTGCACATCAGCTAA
+>seq_349174_x270
+TCACCGGGTGAACACTTGCAGC
+>seq_349444_x269
+TCACCTGGTGGAAACTAGCAGT
+>seq_349713_x268
+TCACCGGGTGTANATCAGCTAA
+>seq_349981_x265
+TCACCGGGTTGAAACTAGCAGT
+>seq_350246_x264
+TCACCGGGTGGCAACTAGCAGT
+>seq_350510_x263
+TCACCGGGTGGAAACTACCAGT
+>seq_350773_x263
+TCACCGGGTGGAAACTAGAAGT
+>seq_351036_x251
+TCACCGGGGGAAAATTCGCATG
+>seq_351287_x247
+TCACCGGGTGGACATCAGCTAA
+>seq_351534_x242
+TCACCGGGTGAACACTTGCAGG
+>seq_351776_x240
+ACCGGGTGTACATCAGCTAA
+>seq_352016_x236
+TCACCGGGTGGAAACTAGNAGT
+>seq_352252_x230
+TCACCGGGAGAAAAACTGGAGTT
+>seq_352482_x229
+TCACCGGGTGAAAATTCGCAT
+>seq_352711_x226
+TCACCGGGTGAAGACTTGCAGT
+>seq_352937_x224
+TCACCGGGCGTACATCAGCTAA
+>seq_353161_x223
+TCACCGGGTGGAAACTNGCAGT
+>seq_353384_x221
+CACCGGGTGAACACTTGCAGTT
+>seq_353605_x219
+TCACCGGATGGAAACTAGCAGT
+>seq_353824_x217
+TCACCGGGTGGAAACTAGCATT
+>seq_354041_x214
+TAACCGGGTGAACACTTGCAGT
+>seq_354255_x214
+TCACCGGGTGTAAATCAGCTTT
+>seq_354469_x212
+TCACCGGGTTAACACTTGCAGT
+>seq_354681_x211
+TCAGCGGGTGGAAACTAGCAGT
+>seq_354892_x210
+TCACCGGGTGCACACTTGCAGT
+>seq_355102_x209
+TCACCGGCTGGAAACTAGCAGT
+>seq_355311_x207
+TCACCGGCTGAACACTTGCAGT
+>seq_355518_x204
+TCATCGGGTGGAAACTAGCAGT
+>seq_355722_x204
+TTACCGGGTGGAAACTAGCAGT
+>seq_355926_x199
+TCACCGGGTGTACATCATCTAA
+>seq_356125_x198
+TCACCGGGTGGGAACTAGCAGT
+>seq_356323_x196
+TCACCGGGTGAATACTTGCAGT
+>seq_356519_x194
+TCACCAGGTGGAAACTAGCAGT
+>seq_356713_x192
+GCACCGGGTGGAAACTAGCAGT
+>seq_356905_x190
+TCACCTGGTGAACACTTGCAGT
+>seq_357095_x189
+TCACAGGGTGGAAACTAGCAG
+>seq_357284_x187
+TCACCGGGTGAACACTTGCAGA
+>seq_357471_x183
+TCACCGGGTGAACACCTGCAGT
+>seq_357654_x183
+TGACCGGGTGGAAACTAGCAGT
+>seq_357837_x183
+TCACCGGGTGTACATCAGCT
+>seq_358020_x178
+TCACCGGATGAACACTTGCAGT
+>seq_358198_x178
+TCACCGGGTGGAAACTAGCACT
+>seq_358376_x178
+ATCACCGGGTGAACACTTGCAGT
+>seq_358554_x177
+TCACCGAGTGGAAACTAGCAGT
+>seq_358731_x174
+TCACCGGGTGAACACTAGCAGT
+>seq_358905_x171
+TCACCGGGTGGATACTAGCAGT
+>seq_359076_x170
+TCACCGGGTGAACACTCGCAGT
+>seq_359246_x169
+TCACTGGGTGGAAACTAGCAGT
+>seq_359415_x166
+TCACCGGGTGGAAACCAGCAGT
+>seq_359581_x164
+TCACCGGGTGGAATCTAGCAGT
+>seq_359745_x162
+TCACCGGGTGGACACTTGCAGT
+>seq_359907_x159
+TCACCGGGTGGAAACTGGCAGT
+>seq_360066_x159
+TCACCGGGAGTACATCAGCTAA
+>seq_360225_x157
+TCACCGGGCGAAAATTCGCATG
+>seq_360382_x156
+TCACCGGGTGGAAACTAACAGT
+>seq_360538_x155
+TCACCGGGTCGAAACTAGCAGT
+>seq_360693_x155
+TCACCGGGTGAACACTTGNAGT
+>seq_360848_x153
+TCACCGAGTGAACACTTGCAGT
+>seq_361001_x150
+TCACCGGGTGAACACTTCCAGT
+>seq_361151_x146
+CCACCGGGTGGAAACTAGCAGT
+>seq_361297_x146
+TCACCAGGTGAACACTTGCAGT
+>seq_361443_x144
+TCACCGGGGGGAAACTAGCAG
+>seq_361587_x144
+TCACCGGGAGAAAAACTGGAG
+>seq_361731_x143
+TCACCGGGAGAAAATTCGCATG
+>seq_361874_x141
+CACCGGGTGAACACTTGCAGTA
+>seq_362015_x141
+TNACCGGGTGGAAACTAGCAGT
+>seq_362156_x140
+TCACCGGGTGAACACTTGCACT
+>seq_362296_x138
+TCACCGGGTGAACACTTGCATT
+>seq_362434_x135
+TCACCGGGTGAACTCTTGCAGT
+>seq_362569_x133
+TCACCGGGTGAACACTTGTAGT
+>seq_362702_x132
+TCACCGGGTGGAAACTAGCAT
+>seq_362834_x132
+TCACCGGGTGGAAACTAGCAAT
+>seq_362966_x132
+TCACCGGGTGTAAACTAGCAGT
+>seq_363098_x131
+TCACCGGGTGAACACGTGCAGT
+>seq_363229_x131
+TCACCGGGTGGAAACTAGC
+>seq_363360_x131
+TCACCGGGTGGAAAGTAGCAGT
+>seq_363491_x129
+TCACCGGGTGAACACTTACAGT
+>seq_363620_x129
+TCACCGTGTGGAAACTAGCAGT
+>seq_363749_x128
+TCATCGGGTGAACACTTGCAGT
+>seq_363877_x122
+TCACCGGGTGAACACTNGCAGT
+>seq_363999_x122
+TCACCGGGTCAACACTTGCAGT
+>seq_364121_x117
+TCACCGGGAGGAAACTAGCAG
+>seq_364238_x115
+GCACCGGGTGAACACTTGCAGT
+>seq_364353_x115
+TCACCGCGTGTACATCAGCTAA
+>seq_364468_x114
+TCACCGTGTGAACACTTGCAGT
+>seq_364582_x111
+TCACCGGGCGGAAACTAGCAG
+>seq_364693_x111
+TCACCGGGTGGAAACGAGCAGT
+>seq_364804_x110
+TCACCGGGTGTACATAAGCTAA
+>seq_364914_x108
+TCACCGGTTGGAAACTAGCAGT
+>seq_365022_x107
+TTACCGGGTGAACACTTGCAGT
+>seq_365129_x106
+TCACTGGGTGAACACTTGCAGT
+>seq_365235_x104
+ACCGGGTGAAAATTCGCATG
+>seq_365339_x104
+TCACCGGGTGAACACTTGAAGT
+>seq_365443_x103
+TGACCGGGTGAACACTTGCAGT
+>seq_365546_x102
+CACCGGGTGGAAACTAGCAGT
+>seq_365648_x102
+TCACCGGGTGTACACTTGCAGT
+>seq_365750_x101
+ACACCGGGTGGAAACTAGCAGT
+>seq_365851_x101
+TCACCGGGTAGAAACTAGCAGT
+>seq_365952_x99
+AATCACCGGGTGGAAACTAGCAGT
+>seq_366051_x97
+TCACCGGGTGAACATTTGCAGT
+>seq_366148_x95
+TCACCGGGTGAAAATTAGCATG
+>seq_366243_x94
+TCACCGGGTGGAAAATAGCAG
+>seq_366337_x94
+TCACCGGTTGAACACTTGCAGT
+>seq_366431_x93
+CCACCGGGTGAACACTTGCAGT
+>seq_366524_x92
+TCACCGGGTAAACACTTGCAGT
+>seq_366616_x91
+TCACCGGGTGGANACTAGCAG
+>seq_366707_x90
+TCACCGGGTGTACATTAGCTAA
+>seq_366797_x89
+TCACCGGGTGTACATCAGCTAC
+>seq_366886_x88
+TCACCGGGTGGAAACTAG
+>seq_366974_x88
+TCACCGGGTGTAAATCAGCTT
+>seq_367062_x87
+AATCACCGGGTGAACACTTGCAGT
+>seq_367149_x86
+TCAGCGGGTGAACACTTGCAGT
+>seq_367235_x86
+TCACCCGGTGGAAACTAGCAGT
+>seq_367321_x85
+TCACCGGGTGGAACCTAGCAGT
+>seq_367406_x84
+TCACCGGGTGTACATCCGCTAA
+>seq_367490_x83
+TNACCGGGTGAACACTTGCAGT
+>seq_367573_x83
+TCACCGGGTGTACATCAGCTCA
+>seq_367656_x78
+TCACCGGGTGAANATTCGCATG
+>seq_367734_x78
+TCCCCGGGTGGAAACTAGCAGT
+>seq_367812_x78
+TCACAGGGTGAACACTTGCAG
+>seq_367890_x78
+TCACCGGGTGTAAATCAGCTAA
+>seq_367968_x76
+TGTGGGTGTCCGTTGCGGTGCTA
+>seq_368044_x74
+CACCGGGTGTACATCAGCTAA
+>seq_368118_x72
+TCACCGGGTGTACATCAGTTAA
+>seq_368190_x71
+ACACCGGGTGAACACTTGCAGT
+>seq_368261_x70
+TCACCCGGTGAACACTTGCAGT
+>seq_368331_x70
+TCACCGGGTGTACATCAGATAA
+>seq_368401_x69
+TCACCGGGTGTACATCACCTAA
+>seq_368470_x69
+ACCGGGGGGAAACTAGCAGT
+>seq_368539_x67
+TCACCGGGTGAACACTTGCGGT
+>seq_368606_x67
+ACCGGGTGGAAACTAGCAG
+>seq_368673_x66
+TCACCGCGTGAAAATTCGCATG
+>seq_368739_x66
+TCACCGGGTGAAAATTCTCATG
+>seq_368805_x66
+CTCACCGGGTGAACACTTGCAGT
+>seq_368871_x65
+TCAACGGGTGTACATCAGCTAA
+>seq_368936_x64
+TCACCGGGTGTACATCAGC
+>seq_369000_x64
+TCACCGGGTGGAAACTAGCGGT
+>seq_369064_x62
+TCACCGGGTGAACACTTGCAAT
+>seq_369126_x62
+TCACCGGGTGAACCCTTGCAGT
+>seq_369188_x61
+TCACCGGGTGACCACTTGCAGT
+>seq_369249_x61
+TCACCGGGTGTAGATCAGCTAA
+>seq_369310_x61
+CTCACCGGGTGGAAACTAGCAGT
+>seq_369371_x60
+TCACCGGGGGAACACTTGCAG
+>seq_369431_x59
+TCAACGGGTGAAAATTCGCATG
+>seq_369490_x59
+TCACCGGGTGAACATCAGCTAA
+>seq_369549_x59
+TCACCGGGTGTACTTCAGCTAA
+>seq_369608_x57
+TCACCGGGTGGAAACTAGCAGTG
+>seq_369665_x55
+TCACCGGGTGAACACATGCAGT
+>seq_369720_x53
+TCACCGGGTGTACATCAACTAA
+>seq_369773_x52
+TCACCGGGTGTATATCAGCTAA
+>seq_369825_x52
+AATCACCGGGTGTACATCAGCTAA
+>seq_369877_x52
+TCACCGGGTGTACATCTGCTAA
+>seq_369929_x51
+TCACCGGGTGGAAACTAGCAGTC
+>seq_369980_x50
+ACCCGGTGGAAACTAGCAGT
+>seq_370030_x50
+AGCTGATTTCGTCTTGGTAAT
+>seq_370080_x48
+TAACCGGGTGTACATCAGCTAA
+>seq_370128_x47
+TCACCGGGTGCAAATTCGCATG
+>seq_370175_x47
+TCACCGGGTGTACATCNGCTAA
+>seq_370222_x46
+TCACCGGGTGTACATCAGNTAA
+>seq_370268_x46
+ACCGGGCGGAAACTAGCAGT
+>seq_370314_x46
+TCACCGGGTGTACATCGGCTAA
+>seq_370360_x45
+TCACCGGGTGTACATCAGCTTA
+>seq_370405_x44
+ACCGGGTGAACACTTGCAG
+>seq_370449_x44
+TTACCGGGTGTACATCAGCTAA
+>seq_370493_x44
+TCGCCGGGTGGAAACTAGCAGT
+>seq_370537_x43
+TCACCGCGTGGAAACTAGCAG
+>seq_370580_x42
+GGTGGTTTTTCTCTGCAGTGATA
+>seq_370622_x42
+TCACCGGGTTTACATCAGCTAA
+>seq_370664_x41
+TCACCGGGTGGAAACAAGCAGT
+>seq_370705_x41
+TCACCGGGTGGAAACTATCAG
+>seq_370746_x41
+TCACAGGGTGGAAACTAGCA
+>seq_370787_x41
+TCACCGGGCGAACACTTGCAG
+>seq_370828_x40
+TCACCGGCTGTACATCAGCTAA
+>seq_370868_x40
+TCACCGGGTGAACGCTTGCAGT
+>seq_370908_x40
+TCACCGGATGTACATCAGCTAA
+>seq_370948_x40
+TCACCGGGTGGAAGCTAGCAGT
+>seq_370988_x40
+TCACCGGGTGGAAACTAGGAGT
+>seq_371028_x39
+TCACCGGGTGAACAGTTGCAGT
+>seq_371067_x39
+TCACCGGNTGGAAACTAGCAGT
+>seq_371106_x39
+TCAACGGGTGGAAACTAGCAG
+>seq_371145_x39
+TCACCGGGTGTACATCAGCTGA
+>seq_371184_x38
+TCACGGGGTGGAAACTAGCAGT
+>seq_371222_x38
+TCACCGGNTGAACACTTGCAGT
+>seq_371260_x37
+TCACCGGGTGAACACTTGGAGT
+>seq_371297_x37
+CGCCAATTTTCGCTTCAGTGCTA
+>seq_371334_x37
+TCATCGGGTGTACATCAGCTAA
+>seq_371371_x37
+TCACCGGGGGGAAACTAGCA
+>seq_371408_x36
+TCACCGGGTGAAAATTCGCATGT
+>seq_371444_x36
+TCACCGGGTGAAAATTCGCAGG
+>seq_371480_x36
+TCCCCGGGTGAACACTTGCAGT
+>seq_371516_x35
+ATCACCGGGTGGAAACTAGCAGT
+>seq_371551_x34
+CACCGGGTGGAAACTAGCAGTT
+>seq_371585_x34
+TCACCTGGTGTACATCAGCTAA
+>seq_371619_x34
+TCACTGGGTGTACATCAGCTAA
+>seq_371653_x34
+TCACCGGGTGAAAATTCGCATA
+>seq_371687_x34
+TCACCGGGTGGAAACTAGCAA
+>seq_371721_x34
+ATCACCGGGTGTACATCAGCTAA
+>seq_371755_x33
+TCTCCGGGTGGAAACTAGCAGT
+>seq_371788_x33
+TCACCGGGAGAACACTTGCAG
+>seq_371821_x33
+TCACCGGGTGTAAATCAGCTTA
+>seq_371854_x33
+TCACCGGGAGAAAAACTGGAGC
+>seq_371887_x33
+ACCGGGTGTAAATCAGCTTG
+>seq_371920_x33
+ACCGGGCGAACACTTGCAGT
+>seq_371953_x32
+TCACCGAGTGTACATCAGCTAA
+>seq_371985_x32
+TCACCGGGTGGAAATTCGCATG
+>seq_372017_x32
+ACCGGGTGGAAACTAGCAGTT
+>seq_372049_x31
+TCACCAGGTGTACATCAGCTAA
+>seq_372080_x31
+TCACCGGGTGTAAATCAGCTTGT
+>seq_372111_x31
+TCACCGGGTCTACATCAGCTAA
+>seq_372142_x31
+TCACAGGGTGTAAATCAGCTTG
+>seq_372173_x31
+TCACCGGGTGAANACTTGCAG
+>seq_372204_x30
+TCACCGGGTGAACATTCGCATG
+>seq_372234_x30
+TCACCGGGTGAAAATTTGCATG
+>seq_372264_x30
+TCACAGGGTGTACATCAGCTA
+>seq_372294_x30
+TCACCGGGTGGAAACTAGTAG
+>seq_372324_x29
+AGTGGATGTATGCCATGATGATA
+>seq_372353_x29
+TTACCGGGTGAAAATTCGCATG
+>seq_372382_x29
+TCACTGGGTGAAAATTCGCATG
+>seq_372411_x29
+ACCGGGTGAACACTTGCAGTT
+>seq_372440_x28
+TCACCGGGTGTACATCAGCTAAC
+>seq_372468_x28
+TCACCGGGTGATCACTTGCAGT
+>seq_372496_x27
+TCGCCGGGTGAACACTTGCAGT
+>seq_372523_x27
+TCACCGGGTGGAGACTAGCAG
+>seq_372550_x27
+TCACCGGGTGTACATCAG
+>seq_372577_x27
+TCACCGGGTGAAAATTCACATG
+>seq_372604_x27
+TGACCGGGTGTACATCAGCTAA
+>seq_372631_x27
+TCACCGGGTGAAAAATCACCTA
+>seq_372658_x27
+TCACCGGGGGTAAATCAGCTTG
+>seq_372685_x26
+TAACCGGGTGAAAATTCGCATG
+>seq_372711_x26
+TCACCGGGTGTACAGCAGCTAA
+>seq_372737_x26
+TCACCGCGTGAACACTTGCAG
+>seq_372763_x26
+TCACCGGGTGGACACTAGCAG
+>seq_372789_x26
+TCACCGGGTGAGCACTTGCAGT
+>seq_372815_x25
+TCACCGGGTGAAAATTCGCA
+>seq_372840_x25
+TCACCGGGCGGAAACTAGCA
+>seq_372865_x25
+TCACCGGGTGTAAATTCGCATG
+>seq_372890_x25
+TCACCGGGTGAACAATTGCAG
+>seq_372915_x25
+TCACCGGGTGTACCTCAGCTAA
+>seq_372940_x24
+TCACCGGGTGGTAACTAGCAG
+>seq_372964_x24
+TCACCGGGTGTACATCAGCGAA
+>seq_372988_x24
+TCACAGGGTGAACACTTGCA
+>seq_373012_x24
+TCACCGGGTGAACACTTGC
+>seq_373036_x24
+ACCGGGTGGAAACTAGCAGTA
+>seq_373060_x24
+TCACCGAGTGAAAATTCGCATG
+>seq_373084_x24
+TCACCGGGTGGAAACTCGCAG
+>seq_373108_x23
+ACCGGGTGAACACTTGCCGT
+>seq_373131_x23
+CACCGGGTGAACACTTGCAG
+>seq_373154_x23
+TCACCTGGTGGAAACTAGCAG
+>seq_373177_x23
+TTCACCGGGTGAACACTTGCAG
+>seq_373200_x23
+TCACCGGGTGGANACTAGCA
+>seq_373223_x23
+TCACGGGGTGAACACTTGCAGT
+>seq_373246_x22
+TCACCGGGTGAAAACTTGCAG
+>seq_373268_x22
+TCACCGGGTGAAAATTCGCATC
+>seq_373290_x22
+TCACCGGGTGAAAATTNGCATG
+>seq_373312_x22
+TCACCGGGTGTAAATCAGCT
+>seq_373334_x22
+TCACCGGGAGAAAAACTGCAGT
+>seq_373356_x22
+TCACCGGGTGCAAACTAGCAG
+>seq_373378_x22
+TCACCGGGTGAACACTTGCAGTC
+>seq_373400_x22
+TCACCGGGTGAAAATTCGCCTG
+>seq_373422_x21
+TCACAGGGAGAAAAACTGGAGT
+>seq_373443_x21
+TCAGCGGGTGAAAATTCGCATG
+>seq_373464_x21
+TCACCGGATGGAAACTAGCAG
+>seq_373485_x21
+ACCGGGTGAACACTTTCAGT
+>seq_373506_x21
+TCACCAGGTGAAAATTCGCATG
+>seq_373527_x21
+TNACCGGGTGTACATCAGCTAA
+>seq_373548_x20
+TCACCGGCTGAAAATTCGCATG
+>seq_373568_x20
+TCACCGGGTGGAAATTAGCAG
+>seq_373588_x20
+TCACCGGGTGAAAATTCGCTTG
+>seq_373608_x20
+TCACCGGGTGAACACTTG
+>seq_373628_x20
+TCACCTGGTGAAAATTCGCATG
+>seq_373648_x20
+CCACCGGGTGTACATCAGCTAA
+>seq_373668_x20
+ATCACCGGGTGAACACTTGCAG
+>seq_373688_x20
+NCACCGGGTGGAAACTAGCAGT
+>seq_373708_x20
+TCACCGGGAGAAAAACTGGAGTA
+>seq_373728_x19
+TCACCGGGTGACAATTCGCATG
+>seq_373747_x19
+CACCGGGTGTACATCAGCTAAA
+>seq_373766_x19
+TCACCGGGTGCAAATCAGCTTG
+>seq_373785_x19
+TCACCGGATGAAAATTCGCATG
+>seq_373804_x19
+AATCACCGGGTGAAAATTCGCATG
+>seq_373823_x19
+TCACCGGGAGGAAACTAGCA
+>seq_373842_x19
+TCACCGGGTGAAAATTCGAATG
+>seq_373861_x19
+TCACCGGGTGAACACTTGCAGTG
+>seq_373880_x19
+TCACCGGGAGTAAATCAGCTTG
+>seq_373899_x19
+TCACCGTGTGTACATCAGCTAA
+>seq_373918_x19
+TCACCGGCTGGAAACTAGCAG
+>seq_373937_x19
+TCACCGGGTGAACACTTTCAG
+>seq_373956_x19
+AGCTGATTTCGTCTTGGTAATAT
+>seq_373975_x18
+TCACCGGGAGAACACTTGCA
+>seq_373993_x18
+TCACCGGGTGGAAACTNGCAG
+>seq_374011_x18
+CACCGGGGGAACACTTGCAGT
+>seq_374029_x18
+TCACCGGGTGTACATCAGCTAAG
+>seq_374047_x18
+TCACCGGGTGGAAACTAGAAG
+>seq_374065_x18
+CACCGGGTGTACATCAGCTAAT
+>seq_374083_x18
+TCACCGGGAGAAAAACTGGTGT
+>seq_374101_x18
+TCACCGGTTGTACATCAGCTAA
+>seq_374119_x18
+TCACCGGGTGAAAATTCGTATG
+>seq_374137_x18
+TCACCGGGAGTACATCAGCTA
+>seq_374155_x18
+TCACCGGGTATACATCAGCTAA
+>seq_374173_x17
+TCACCGGGTGGAAACTAACAG
+>seq_374190_x17
+TCACCGGGAGAAAAACTGGAGA
+>seq_374207_x17
+AATCACCGGGTGGAAACTAGCAG
+>seq_374224_x17
+TCACCGGGTGGAAACTAGCTG
+>seq_374241_x17
+TCAGCGGGTGTACATCAGCTAA
+>seq_374258_x17
+TCACCGGGTGAAATTTCGCATG
+>seq_374275_x17
+TCAGCGGGTGGAAACTAGCAG
+>seq_374292_x17
+AGCTGATTTCGTCTTGGTAA
+>seq_374309_x17
+TCACCGGGCGTAAATCAGCTTG
+>seq_374326_x17
+TCACCGGGTGTAAATTAGCTTG
+>seq_374343_x16
+GCACCGGGTGAAAATTCGCATG
+>seq_374359_x16
+ACCGGGGGAACACTTGCAGT
+>seq_374375_x16
+TCACCGGGTGAACACTTGCAT
+>seq_374391_x16
+TCATCGGGTGAAAATTCGCATG
+>seq_374407_x16
+CACCGGGGGGAAACTAGCAGT
+>seq_374423_x16
+CTCACCGGGTGTACATCAGCTAA
+>seq_374439_x16
+CACCGGGTGAACACTTGCAGTG
+>seq_374455_x16
+TCACCGGGTGGAAACTACCAG
+>seq_374471_x16
+TGACCGGGTGGAAACTAGCAG
+>seq_374487_x16
+GCACCGGGTGTACATCAGCTAA
+>seq_374503_x16
+TAACCGGGTGGAAACTAGCAG
+>seq_374519_x16
+ACCGGGTGAACACTTGCAGTA
+>seq_374535_x16
+ACCGGGTGGAAACTAGCCGT
+>seq_374551_x16
+TCACCGGGTGAAGATTCGCATG
+>seq_374567_x15
+TCANCGGGTGGAAACTAGCAGT
+>seq_374582_x15
+TCACCGGGTGGAAACTAGNAG
+>seq_374597_x15
+TCACCGGGTGTAAATCAGCTTC
+>seq_374612_x15
+TCACCGGGNGGAAACTAGCAGT
+>seq_374627_x15
+TCACCGGGTAAAAATTCGCATG
+>seq_374642_x15
+TCACCGGGTGTAAATAAGCTTG
+>seq_374657_x15
+TCACCGGGTGGAAAATAGCA
+>seq_374672_x15
+ACCGGGAGGAAACTAGCAGT
+>seq_374687_x14
+TGACCGGGTGAAAATTCGCATG
+>seq_374701_x14
+TCACCGGGTGAAAATTGGCATG
+>seq_374715_x14
+TCACCGGGTGGGAACTAGCAG
+>seq_374729_x14
+TCACCGGGTGAAAACTTGCA
+>seq_374743_x14
+TCACCGGGTGGCAACTAGCAG
+>seq_374757_x14
+TGTGGGTGTCCGTTGCGGTGCT
+>seq_374771_x14
+TCACCGGGTGAACACTGGCAG
+>seq_374785_x14
+TCCCCGGGTGTACATCAGCTAA
+>seq_374799_x14
+TCACCGGGTGAAAATTCGNATG
+>seq_374813_x14
+TCACCGGGTGGAAACTAGCAC
+>seq_374827_x14
+TCACTGGGTGGAAACTAGCAG
+>seq_374841_x14
+TCACCGGGTGTACATCAGCAAA
+>seq_374855_x14
+TCACCGGGTGGAAATCAGCTTG
+>seq_374869_x13
+TCACCGGGTGTTCATCAGCTAA
+>seq_374882_x13
+TCATCGGGTGGAAACTAGCAG
+>seq_374895_x13
+TCACCGGGTGAAAATTCCCATG
+>seq_374908_x13
+ACCGGGTGGAAACTAGCAGC
+>seq_374921_x13
+CCACCGGGTGGAAACTAGCAG
+>seq_374934_x13
+ACCGGGTGGAAAATAGCAGT
+>seq_374947_x13
+TCACCGGGAGAAAAACTGGAGTAA
+>seq_374960_x13
+CACCGGGTGGAAACTAGCAG
+>seq_374973_x13
+TCACCGGGTGATAATTCGCATG
+>seq_374986_x13
+TCACCGGGTGGAAAGTAGCAG
+>seq_374999_x13
+TCACCCGGTGTACATCAGCTAA
+>seq_375012_x13
+TCACCGGGTTGAAACTAGCAG
+>seq_375025_x13
+TCACCGGGTGGAAACTAGCT
+>seq_375038_x13
+ACACCGGGTGTACATCAGCTAA
+>seq_375051_x13
+TCACCGGGTTAAAATTCGCATG
+>seq_375064_x12
+TCACCGGGTGAGAATTCGCATG
+>seq_375076_x12
+ATCACCGGGTGAAAATTCGCATG
+>seq_375088_x12
+ATCACCGGGAGAAAAACTGGAGT
+>seq_375100_x12
+TNACCGGGTGGAAACTAGCAG
+>seq_375112_x12
+TCACCGGGAGAAAAACTGGAGG
+>seq_375124_x12
+ACCCGGTGAACACTTGCAGT
+>seq_375136_x12
+TCACCGGGTGAAAATCCGCATG
+>seq_375148_x12
+ACCGGGAGAACACTTGCAGT
+>seq_375160_x12
+TCACCGGGAGAAAAATTGGAGT
+>seq_375172_x12
+TCACCGGGTGGAAACTAGCCG
+>seq_375184_x12
+TCACCGGGTGAACACTTGCTG
+>seq_375196_x12
+TCACCGGGTGTAAATCAGCTTGA
+>seq_375208_x12
+TCACCGGGTCAAAATTCGCATG
+>seq_375220_x11
+TCACCGGGCGAACACTTGCA
+>seq_375231_x11
+TGCTGGTTTCTTCCACAGTGGTA
+>seq_375242_x11
+TCACCGTGTGGAAACTAGCAG
+>seq_375253_x11
+ACCGGGTGGAAACTAGCA
+>seq_375264_x11
+TCACCGGGTGAAAACTAGCAG
+>seq_375275_x11
+ACCGGGCGTACATCAGCTAA
+>seq_375286_x11
+TCACCGGGTGTAAATCAGC
+>seq_375297_x11
+TCACCGGGTGAAAACTCGCATG
+>seq_375308_x11
+TCACCGGGTGAACACCTGCAG
+>seq_375319_x11
+TCACCGGGGGTACATCAGCTA
+>seq_375330_x11
+TCACCGGGNGAACACTTGCAGT
+>seq_375341_x11
+TCACCGGGTAGAAACTAGCAG
+>seq_375352_x11
+TCACCGGGTGTCCATCAGCTAA
+>seq_375363_x11
+TCACCGGGTGTGCATCAGCTAA
+>seq_375374_x11
+TCACCGGGTGTACGTCAGCTAA
+>seq_375385_x10
+TCACCGGGTGAACACTGGCA
+>seq_375395_x10
+ACCGGGAGAAAAACTGGAGT
+>seq_375405_x10
+TCACCGCGTGGAAACTAGCA
+>seq_375415_x10
+TCACCGGGTGAACACTTGAAG
+>seq_375425_x10
+TCACCGGGTGAAAAATCGCATG
+>seq_375435_x10
+CACCGGGTGGAAACTAGCAGTA
+>seq_375445_x10
+TCACCGGGTGTANATCAGCTTG
+>seq_375455_x10
+AGCTGATTTCGTCTTGTTAATA
+>seq_375465_x10
+TCACCGGGTGGAAACTGGCAG
+>seq_375475_x10
+TCCCCGGGTGAAAATTCGCATG
+>seq_375485_x10
+TCACCGGGAGCAAAACTGGAGT
+>seq_375495_x10
+TCACCGGTTGAAAATTCGCATG
+>seq_375505_x10
+TNACCGGGTGAAAATTCGCATG
+>seq_375515_x10
+TCACCGGGTGTACATCAGCCAA
+>seq_375525_x10
+CTCACCGGGTGAAAATTCGCATG
+>seq_375535_x10
+TCACCGGGTGAACTCTTGCAG
+>seq_375545_x10
+TCACNGGGTGAACACTTGCAGT
+>seq_375555_x10
+TCACCGGGTGTAAATCATCTTG
+>seq_375565_x10
+TCANCGGGTGAACACTTGCAGT
+>seq_375575_x10
+TCACCGGGTGGAAACTTGCAG
+>seq_375585_x10
+TCACCGGGTGTACATCAGGTAA
+>seq_375595_x10
+CTATCACCGGGTGTACATCAGC
+>seq_375605_x10
+TCACCGGGTGAAAAGTCGCATG
+>seq_375615_x10
+ATCACCGGGTGAAAAATCACCTA
+>seq_375625_x10
+TCAACGGGTGAACACTTGCAG
+>seq_375635_x10
+TCACCGGGTGAAAATTCGCATGA
+>seq_375645_x10
+TCACCCGGTGAAAATTCGCATG
+>seq_375655_x10
+TCACCGGGTGAAACTTCGCATG
+>seq_375665_x10
+TCACCGGGTGTACACCAGCTAA
+>seq_375675_x10
+TCACCGGGTGGAAACTAGCG
+>seq_375685_x9
+ACCGGGTGAACACTTGCAGC
+>seq_375694_x9
+NCACCGGGTGAACACTTGCAGT
+>seq_375703_x9
+TCACCGGGTGTACATCAGCTAG
+>seq_375712_x9
+TCACCGTGTGAAAATTCGCATG
+>seq_375721_x9
+ACCGGGTGAAAACTTGCAGT
+>seq_375730_x9
+ACCGGGTGGAAACTAGCAGA
+>seq_375739_x9
+TCACCGGGAGAAAAAATGGAGT
+>seq_375748_x9
+CCACCGGGTGAAAATTCGCATG
+>seq_375757_x9
+TCACCGGGTGTAAATCCGCTTG
+>seq_375766_x9
+TCACCGGGTGAATACTTGCAG
+>seq_375775_x9
+TCACCGGGTGCACATCAGCTA
+>seq_375784_x9
+TCACCGGGTGGATACTAGCAG
+>seq_375793_x9
+TCACCGGGTGAACACTTGCCG
+>seq_375802_x9
+ACCGGGTGGAAACTAACAGT
+>seq_375811_x9
+TCACNGGGTGGAAACTAGCAGT
+>seq_375820_x9
+TCACCGGGTGTAAACTAGCAG
+>seq_375829_x9
+ACCGGGTGGAAACTAGCAGG
+>seq_375838_x9
+GATACTTCTAACAACTCGCTA
+>seq_375847_x9
+GCACCGGGTGTAAATCAGCTTG
+>seq_375856_x9
+GCACCGGGTGGAAACTAGCAG
+>seq_375865_x9
+TCACCGGNTGTACATCAGCTAA
+>seq_375874_x9
+TCACCGGGTGAAAATTCGCACG
+>seq_375883_x9
+TCACCGCGTGAACACTTGCA
+>seq_375892_x9
+TCACCGGGTGGAACCTAGCAG
+>seq_375901_x9
+TCACCGGGTGGAAACTATCA
+>seq_375910_x8
+TCAACGGGTGGAAACTAGCA
+>seq_375918_x8
+TTACCGGGTGTAAATCAGCTTG
+>seq_375926_x8
+ACCGGGTGGGAACTAGCAGT
+>seq_375934_x8
+TCACCGGGTGGAAACTCGCA
+>seq_375942_x8
+TCACCGCGTGTAAATCAGCTTG
+>seq_375950_x8
+AGATGATTTCGTCTTGGTAATA
+>seq_375958_x8
+TCACCGGGTGAACACTTGTAG
+>seq_375966_x8
+TCGCCGGGTGTACATCAGCTAA
+>seq_375974_x8
+TCTCCGGGTGAACACTTGCAGT
+>seq_375982_x8
+ACCGGGTGAACACTTGCAGA
+>seq_375990_x8
+TCACCGGCTGAACACTTGCAG
+>seq_375998_x8
+TCACCGGGTGAAAATTCGCGTG
+>seq_376006_x8
+ATCACCGGGTGAAAAATCACCT
+>seq_376014_x8
+CCGGGTGGAAACTAGCAGT
+>seq_376022_x8
+TCAACGGGTGTAAATCAGCTTG
+>seq_376030_x8
+ACGCATCCAAAAGTCTCTA
+>seq_376038_x8
+TCACCGGGAGTAAAACTGGAGT
+>seq_376046_x8
+TCACCGGGTGGAAACCAGCAG
+>seq_376054_x8
+TCACCGGGAGGAAAACTGGAGT
+>seq_376062_x8
+TCACGGGGTGAAAATTCGCATG
+>seq_376070_x8
+TCACCGGGTGAACACTTGCAC
+>seq_376078_x8
+TCACCGGGGGAACACTTGCA
+>seq_376086_x8
+CAACGGGTGAACACTTGCAGT
+>seq_376094_x8
+ACCGGGTGAACACTTGCA
+>seq_376102_x8
+AGCTGATTTCGTCTTGGTA
+>seq_376110_x8
+TCACCGGGTGAAAATGCGCATG
+>seq_376118_x8
+TCACCGGGTGTAAATCACCTTG
+>seq_376126_x8
+TCACCTGGTGAACACTTGCAG
+>seq_376134_x7
+TCACCGGGTGTACAACAGCTAA
+>seq_376141_x7
+TCACCGGGTGAAAATACGCATG
+>seq_376148_x7
+AGCTGTTTTCGTCTTGGTAATA
+>seq_376155_x7
+CCACCGGGTGAACACTTGCAG
+>seq_376162_x7
+GCACCGGGTGAACACTTGCAG
+>seq_376169_x7
+TCACCGGGTGGAAACTAGNA
+>seq_376176_x7
+TCACCGGGTGAACACTTGNAG
+>seq_376183_x7
+TCACCGGGTGGAAACTANCAGT
+>seq_376190_x7
+TCACTGGGTGAACACTTGCAG
+>seq_376197_x7
+ACCGGGTGGAAATTAGCAGT
+>seq_376204_x7
+TCACCGGGTGAACACTTCCAG
+>seq_376211_x7
+TCACCGGGTGAAAAACTGGAGT
+>seq_376218_x7
+ACACCGGGTGAAAATTCGCATG
+>seq_376225_x7
+TTACCGGGTGGAAACTAGCAG
+>seq_376232_x7
+CACCGGGTGTACATCAGCTA
+>seq_376239_x7
+TCACCGGGTGTANATCAGCTA
+>seq_376246_x7
+TCACCGGTTGGAAACTAGCAG
+>seq_376253_x7
+TCACCGGGTTAACACTTGCAG
+>seq_376260_x7
+CACCGGGTGAAAACTTGCAGT
+>seq_376267_x7
+TCACCCGGTGGAAACTAGCAG
+>seq_376274_x7
+TCACCGGGTAAACACTTGCAG
+>seq_376281_x6
+TCACCGGGTGAAAATTCGCAAG
+>seq_376287_x6
+TCNCCGGGTGAACACTTGCAGT
+>seq_376293_x6
+TCACCGGGAGAAAAACGGGAGT
+>seq_376299_x6
+TCACCGGGCGTACATCAGCTA
+>seq_376305_x6
+TCACCGAGTGGAAACTAGCAG
+>seq_376311_x6
+TCACCGGGTGTACATCAGCTTG
+>seq_376317_x6
+AGCTGATTTCGTCTTGGTAATAA
+>seq_376323_x6
+TCACCGGGTGAAAATTAGCAT
+>seq_376329_x6
+AGTGGATGTATGCCATGATGATAT
+>seq_376335_x6
+GAAAAGTGGAGCAGAACGAAAA
+>seq_376341_x6
+ACCGGGTGAACACTTGAAGT
+>seq_376347_x6
+TCACCGAGTGAACACTTGCAG
+>seq_376353_x6
+TCGCCGGGTGAAAATTCGCATG
+>seq_376359_x6
+TCACAGGGTGTACATCAGCT
+>seq_376365_x6
+TCACCGGGTGTACATGAGCTAA
+>seq_376371_x6
+AGCTGATTTCGTCTTTGTAATA
+>seq_376377_x6
+TCACCTGGTGTAAATCAGCTTG
+>seq_376383_x6
+TCCCCGGGTGGAAACTAGCAG
+>seq_376389_x6
+TCACCAGGTGAACACTTGCAG
+>seq_376395_x6
+ACCGGGTGAAAAATCACCTA
+>seq_376401_x6
+TCACCGGCTGGAAACTAGCA
+>seq_376407_x6
+ACACCGGGTGGAAACTAGCA
+>seq_376413_x6
+TCACCGGGTGGAATCTAGCAG
+>seq_376419_x6
+CACCGGGAGAACACTTGCAGT
+>seq_376425_x6
+TCACCGGGTGAACACTAGCAG
+>seq_376431_x6
+ATCACCGGGTGTACATCAGCTA
+>seq_376437_x6
+TCACCGGGTGTAAATCAGCTGG
+>seq_376443_x6
+TCACCGGGTGAATACTTGCA
+>seq_376449_x6
+ACCGGGGGGAAACTAGCAG
+>seq_376455_x6
+CAGCTGATTTCGTCTTGGTAATA
+>seq_376461_x6
+TCACCGAGTGAACACTTGCA
+>seq_376467_x6
+TCACCGGGTGTACATCATCTA
+>seq_376473_x6
+ACCGCGTGAACACTTGCAGT
+>seq_376479_x6
+AACGGGTGGAAACTAGCAGT
+>seq_376485_x6
+TCACCGGGTGGTAACTAGCA
+>seq_376491_x6
+TCACCAGGTGGAAACTAGCAG
+>seq_376497_x6
+TCACCTGGTGGAAACTAGCA
+>seq_376503_x6
+ACCGGGTGGACATCAGCTAA
+>seq_376509_x6
+TCACCGGTTGTAAATCAGCTTG
+>seq_376515_x6
+TCACAGGGTGAAAATTCGCAT
+>seq_376521_x6
+TAACCGGGTGAACACTTGCAG
+>seq_376527_x6
+TCCCAACTATTATTCTCGGAT
+>seq_376533_x5
+TGCTGATTTCGTCTTGGTAATA
+>seq_376538_x5
+TAACCGGGTGGAAACTAGCA
+>seq_376543_x5
+TGACCGGGTGAACACTTGCA
+>seq_376548_x5
+TCACCGGGTGTAAAGCAGCTTG
+>seq_376553_x5
+CACCGGGCGAACACTTGCAGT
+>seq_376558_x5
+TCACCGGGTGTACATCAGCTT
+>seq_376563_x5
+TCACCGTGTGAACACTTGCAG
+>seq_376568_x5
+TCACCGGCTGAACACTTGCA
+>seq_376573_x5
+TCACCGGGTGAAGACTTGCAG
+>seq_376578_x5
+AGCTGATTTCGTCTTGGGAATA
+>seq_376583_x5
+TCACCGGGTGAACACGTGCAG
+>seq_376588_x5
+TCATCGGGTGAACACTTGCAG
+>seq_376593_x5
+TGACCGGGTGAACACTTGCAG
+>seq_376598_x5
+ACCGGGTGAACACTTGCACT
+>seq_376603_x5
+ACACCGGGTGAACACTTGCAG
+>seq_376608_x5
+ACCGGGTGGAAACTAGAAGT
+>seq_376613_x5
+TGTGGGTGTCCGTTGCGGTGCTT
+>seq_376618_x5
+ACCGGGGGTACATCAGCTAA
+>seq_376623_x5
+ACCGGGTGGAAANTAGCAGT
+>seq_376628_x5
+TCACCGGGTGTAAATCAGATTG
+>seq_376633_x5
+ACCGGGTGTACATCCGCTAA
+>seq_376638_x5
+TCACCGGGTGGACACTAGCA
+>seq_376643_x5
+TCACCGGGTGCACACTTGCAG
+>seq_376648_x5
+TCACCGGGTGTAAATCGGCTTG
+>seq_376653_x5
+TCACCTGGTGAACACTTGCA
+>seq_376658_x5
+TCACCGGGTGGAAATTAGCA
+>seq_376663_x5
+TCACCGGGTGAACACTTGCT
+>seq_376668_x5
+TCACCGGGTGAACATTTGCAG
+>seq_376673_x5
+TAACCGGGAGAAAAACTGGAGT
+>seq_376678_x5
+TCACCGGGAGAAAAACTCGAGT
+>seq_376683_x5
+TCACCGGGTGTAAATCAGCTTGG
+>seq_376688_x5
+CACCGGGTGAACACTTGCAGC
+>seq_376693_x5
+TCACCGGGTGTAAATCAG
+>seq_376698_x5
+TCANCGGGTGTACATCAGCTAA
+>seq_376703_x5
+TCACCGGGTGAATATTCGCATG
+>seq_376708_x5
+ACCGGGTGGAAACTAGCACT
+>seq_376713_x5
+TCTCCGGGTGTACATCAGCTAA
+>seq_376718_x5
+TCACCGGGAGAAAAACTGGACT
+>seq_376723_x4
+TCACCGGGTGGAAACTAGCAGTAG
+>seq_376727_x4
+TCACCGGGTGGANACTAGC
+>seq_376731_x4
+ACCGGGTGGAAACTATCAGT
+>seq_376735_x4
+TCACCGGGTGAACACTTTCA
+>seq_376739_x4
+AGCTGATTTCGTCTTGGCAATA
+>seq_376743_x4
+TCACAGGGTGTAAATCAGCTT
+>seq_376747_x4
+TCACCGGGAGAAAAACTGGA
+>seq_376751_x4
+TCACCGGTTGAACACTTGCA
+>seq_376755_x4
+TACCGGGTGAACACTTGCAGT
+>seq_376759_x4
+ACCGGGTGTACATCAGCTAAA
+>seq_376763_x4
+TCACTGGGTGGAAACTAGCA
+>seq_376767_x4
+ACCCGGTGTACATCAGCTAA
+>seq_376771_x4
+TCATCGGGTGTAAATCAGCTTG
+>seq_376775_x4
+ATCACCGGGCGAACACTTGCAGT
+>seq_376779_x4
+TCACCAGGTGTAAATCAGCTTG
+>seq_376783_x4
+TCACCGGGTGAACACTTACA
+>seq_376787_x4
+ACCGGGTGGTAACTAGCAGT
+>seq_376791_x4
+TCACCGGGTGGAGACTAGCA
+>seq_376795_x4
+TCGCCGGGTGAACACTTGCA
+>seq_376799_x4
+TCACCGGGTGGAAACTAACA
+>seq_376803_x4
+TCACCGGGTGGAAACTAGCC
+>seq_376807_x4
+TCACCGGGTGTACACTTGCAG
+>seq_376811_x4
+TCACCNGGTGGAAACTAGCAGT
+>seq_376815_x4
+TCACCGGGTGTAATTCAGCTTG
+>seq_376819_x4
+ACCGGGGGAAAATTCGCATG
+>seq_376823_x4
+ACCGGGTGAACCCTTGCAGT
+>seq_376827_x4
+TCACGGGGTGGAAACTAGCAG
+>seq_376831_x4
+ATCACCGGGAGAACACTTGCAGT
+>seq_376835_x4
+TCACCGGATGAACACTTGCAG
+>seq_376839_x4
+ATCACCGGGGGAACACTTGCAGT
+>seq_376843_x4
+TCACCGGGTGTACATCAGATA
+>seq_376847_x4
+ACCGGGTCAACACTTGCAGT
+>seq_376851_x4
+TCACCGGGTGAAAAATCACCT
+>seq_376855_x4
+TCACCGGGTGAACACTTGCAGTGC
+>seq_376859_x4
+TCACCGGGAGAAAAACTGGTG
+>seq_376863_x4
+TCACCGGGAGAAAAACTGTAGT
+>seq_376867_x4
+ACCGGGTCGAAACTAGCAGT
+>seq_376871_x4
+ACCGGGTGGAAACTAGCTGT
+>seq_376875_x4
+TCACCGGGAGAAAAACTTGAGT
+>seq_376879_x4
+ATCACCGGGTGAAAAATCACCTT
+>seq_376883_x4
+TCACCGGGTGTACATAAGCTA
+>seq_376887_x4
+ACCGGTTGGAAACTAGCAGT
+>seq_376891_x4
+TCACCGGGTGTAAATCAGCGTG
+>seq_376895_x4
+ACCGGGTGGCAACTAGCAGT
+>seq_376899_x4
+TCACCGGGTGTAAACCAGCTTG
+>seq_376903_x4
+CGGGTGGAAACTAGCAGT
+>seq_376907_x4
+AGCTGATTTCGTCTTGGTAATT
+>seq_376911_x4
+TCACCGGTTGAACACTTGCAG
+>seq_376915_x4
+TATCACCGGGTGAACACTTGCAG
+>seq_376919_x4
+TCACCTGGTGTACATCAGCTA
+>seq_376923_x4
+TCACCGGGTGAACACATGCAG
+>seq_376927_x4
+TCGGGTGGAAACTAGCAGT
+>seq_376931_x4
+TCACCGGGTGGACACTTGCAG
+>seq_376935_x4
+GCACCGGGTGGAAACTAGCA
+>seq_376939_x4
+TCACCGGGTGGAAACTAGCAGTGC
+>seq_376943_x4
+TCACCGGGTGAACAATTGCA
+>seq_376947_x4
+CTCACCGGGAGAAAAACTGGAGT
+>seq_376951_x4
+ACAGGGTGAACACTTGCAGT
+>seq_376955_x4
+ACCGGGTGTACATCAGCTA
+>seq_376959_x4
+GGTGGTTTTTCTCTTCAGTGATA
+>seq_376963_x4
+TCACCTGGAGAAAAACTGGAGT
+>seq_376967_x4
+TCACCGGGTGTACATCCGCTA
+>seq_376971_x4
+ACCGGGTGAACANTTGCAGT
+>seq_376975_x4
+TCACCGGGAGAAAAACTAGAGT
+>seq_376979_x4
+AGTTGATTTCGTCTTGGTAATA
+>seq_376983_x4
+TCCCCGGGTGAACACTTGCAG
+>seq_376987_x4
+ACAGGGTGGAAACTAGCAGT
+>seq_376991_x4
+TCACCGGGTGTAAATCAGCTTGC
+>seq_376995_x4
+TCACCGAGTGTAAATCAGCTTG
+>seq_376999_x4
+TCAGCGGGAGAAAAACTGGAGT
+>seq_377003_x4
+TCACCGAGTGGAAACTAGCA
+>seq_377007_x3
+ACCGAGTGGAAACTAGCAGT
+>seq_377010_x3
+ACCGGGTGGAAACTACCAGT
+>seq_377013_x3
+TCACCGGGAGAAAAACTGGAGCA
+>seq_377016_x3
+TCACCGGGTGGACATCAGCTA
+>seq_377019_x3
+TCACCGGGTGGAAACTAGCAGTTG
+>seq_377022_x3
+CACCGGGTGAACACTTGCAGA
+>seq_377025_x3
+TCTCCGGGTGAACACTTGCAG
+>seq_377028_x3
+TCACCGGGTGTACATCAGNTA
+>seq_377031_x3
+AGCTGATTTCGTCTTGGTAATC
+>seq_377034_x3
+TCACCGGGTGAAAACTAGCA
+>seq_377037_x3
+TCTCCGGGTGGAAACTAGCAG
+>seq_377040_x3
+TCACCGGGTGAACATCAGCTA
+>seq_377043_x3
+TCACCGGGTGTACATCAGTTA
+>seq_377046_x3
+TCACCGGGTGAACAGTTGCA
+>seq_377049_x3
+TCACCGGGTGGAAACTAGCAGN
+>seq_377052_x3
+TCACCGGGGGAAAAATCACCTA
+>seq_377055_x3
+ATCACCGGGTGGAAACTAGCAGC
+>seq_377058_x3
+NCACCGGGTGTACATCAGCTAA
+>seq_377061_x3
+AGCTGATTTCGTCTTGGAAATA
+>seq_377064_x3
+ACCGGGTGGAAACTAGNAGT
+>seq_377067_x3
+TCACCGGGTGACCACTTGCAG
+>seq_377070_x3
+AGCTGATTTAGTCTTGGTAATA
+>seq_377073_x3
+CACCGGGTGAAAATTCGCATG
+>seq_377076_x3
+TCACCGGGTGGAAACTAGCGG
+>seq_377079_x3
+TCACCGGGTGGAAANTAGCAGT
+>seq_377082_x3
+AATCACCGGGTGAACACTTGCAG
+>seq_377085_x3
+AGCTGATTTCGGCTTGGTAATA
+>seq_377088_x3
+TCACCGGGGGGAAACTAGC
+>seq_377091_x3
+TCACCGGGTGTACATCAGCTC
+>seq_377094_x3
+TNACCGGGTGTAAATCAGCTTG
+>seq_377097_x3
+TCCGGGTGGAAACTAGCAGT
+>seq_377100_x3
+ATCACCGGGTGTAAATCAGCTTG
+>seq_377103_x3
+ACCGGGTGAAAATTCGCAT
+>seq_377106_x3
+TCACCGCGAGAAAAACTGGAGT
+>seq_377109_x3
+ATCACCGGGTGAACACTTGCATT
+>seq_377112_x3
+TCACCGGGTGGCAACTAGCA
+>seq_377115_x3
+GTGTGGGTGTCCGTTGCGGTGCT
+>seq_377118_x3
+TCACCNGGTGAACACTTGCAGT
+>seq_377121_x3
+TCACCGGGTGAANATTCGCAT
+>seq_377124_x3
+TCACCGGGGGAAAATTCGCAT
+>seq_377127_x3
+TCACCGGATGGAAACTAGCA
+>seq_377130_x3
+CACCGGGAGGAAACTAGCAGT
+>seq_377133_x3
+ATCACCGGGTGAACACTTGCAGTT
+>seq_377136_x3
+ACCGGGAGAAAAACTGGAG
+>seq_377139_x3
+TCACTGGGTGTACATCAGCTA
+>seq_377142_x3
+ACTGGGTGGAAACTAGCAGT
+>seq_377145_x3
+TGCTGATTTCGTCTTGGTAAT
+>seq_377148_x3
+TCACCGGGTGAACACTTCCA
+>seq_377151_x3
+AGCTAATTTCGTCTTGGTAATA
+>seq_377154_x3
+TCACCGGGTTAACACTTGCA
+>seq_377157_x3
+ACCGGGTGTACATCAGATAA
+>seq_377160_x3
+ACCGGGTTAACACTTGCAGT
+>seq_377163_x3
+CGCCAATTTTCGCTTCATTGCTA
+>seq_377166_x3
+AGCTGATTTCGTCTTGGTATTA
+>seq_377169_x3
+ACCGGGTGAACAATTGCAGT
+>seq_377172_x3
+ACCGAGTGAACACTTGCAGT
+>seq_377175_x3
+CTCACCGGGTGGAAACTAGCAG
+>seq_377178_x3
+TCACCGGGAGAAAAACTGCAG
+>seq_377181_x3
+TCACCGGGGGGAAACTAGCAGTG
+>seq_377184_x3
+ACCGGGTGAACACTTGCAGG
+>seq_377187_x3
+CACCGGGTGGAAAATAGCAGT
+>seq_377190_x3
+TCACCGGGTGAACACTAGCA
+>seq_377193_x3
+TCACCGGGTGTAAACTAGCA
+>seq_377196_x3
+TCACTGGGAGAAAAACTGGAGT
+>seq_377199_x3
+TCACCGTGTGTAAATCAGCTTG
+>seq_377202_x3
+CACCGGGTGAACACTTGCTGT
+>seq_377205_x3
+AGCTGATTTCGTCTTGCTAATA
+>seq_377208_x3
+TCACCGGGAGAAAAACTGAAGT
+>seq_377211_x3
+TCACCGGGAGGAAAACTGGAG
+>seq_377214_x3
+TNACCGGGAGAAAAACTGGAGT
+>seq_377217_x3
+TCACCGGGTGAAAATCAGCTTG
+>seq_377220_x3
+ACCGGGTGTACATCAGGTAA
+>seq_377223_x3
+TCACCGGCTGTACATCAGCTA
+>seq_377226_x3
+ACCGGGTGAACACTTCCAGT
+>seq_377229_x3
+TCACCGGAAGAAAAACTGGAGT
+>seq_377232_x3
+CGGGTGAACACTTGCAGT
+>seq_377235_x3
+TCACCGGGTGGAAACAAGCAG
+>seq_377238_x3
+TCACTGGGTGTAAATCAGCTTG
+>seq_377241_x3
+CACCGGGTGTAGATCAGCTAA
+>seq_377244_x3
+TCACCGGGTGTAAATCAGCTA
+>seq_377247_x3
+TCACCGGGTGAAAAATCACCTAT
+>seq_377250_x3
+CACCGGGCGGAAACTAGCAGT
+>seq_377253_x3
+TCACCGGGTGAACTCTTGCA
+>seq_377256_x3
+TCACCGGGTGAACACTTGCAGTGA
+>seq_377259_x3
+TCACCGGGTGTAAATCTGCTTG
+>seq_377262_x3
+TCACCGCGTGTACATCAGCTA
+>seq_377265_x3
+TTACCGGGTGAACACTTGCAG
+>seq_377268_x3
+ACCGCGTGGAAACTAGCAGT
+>seq_377271_x3
+TCACCGGGTGAAAATTCGGATG
+>seq_377274_x3
+AGCTGATTTCGTTTTGGTAATA
+>seq_377277_x3
+ACCGGGTGTACACTTGCAGT
+>seq_377280_x3
+ACCGGGTGTACATAAGCTAA
+>seq_377283_x3
+TCATCGGGTGGAAACTAGCA
+>seq_377286_x3
+CACCGGGTGAACACTTGCAGTC
+>seq_377289_x3
+ATCACCGGGTGAACACTTGCA
+>seq_377292_x3
+CCACCGGGTGGAAACTAGCA
+>seq_377295_x3
+TCACCGGGTGAACACTCGCAG
+>seq_377298_x3
+TCACCGGGTGGAAACGAGCAG
+>seq_377301_x3
+CCGGGTGAACACTTGCAGT
+>seq_377304_x3
+TCACAGGGTGGAAACTAGCAGTG
+>seq_377307_x3
+ACCGGGTGGAAAGTAGCAGT
+>seq_377310_x3
+ACCGGGTGTACANCAGCTAA
+>seq_377313_x3
+AGCTGATTTTGTCTTGGTAATA
+>seq_377316_x3
+TCACCGGGTGTACATCAGCAA
+>seq_377319_x3
+AATCACCGGGTGTAAATCAGCTTG
+>seq_377322_x3
+ACTGGGTGAACACTTGCAGT
+>seq_377325_x2
+TCGCCGGGTGGAAACTAGCAG
+>seq_377327_x2
+TTCACCGGGTGGAAACTAGCAG
+>seq_377329_x2
+TCACCGGGTGAAAATTCGCATGC
+>seq_377331_x2
+TCACCGGGTGAAAAATCACCTAA
+>seq_377333_x2
+TNACCGGGTGAACACTTGCAG
+>seq_377335_x2
+TCAACGGGTGAACACTTGCA
+>seq_377337_x2
+TTACCGGGTGTACATCAGCTA
+>seq_377339_x2
+TCACCGGGCGAAAAACTGGAGT
+>seq_377341_x2
+TCACCGGGTGGAAACTACC
+>seq_377343_x2
+ACCGGGTAGAAACTAGCAGT
+>seq_377345_x2
+TCACCGGGTGTAACTCAGCTTG
+>seq_377347_x2
+AACGGGTGTACATCAGCTAA
+>seq_377349_x2
+TCACCGGGNGAAAATTCGCATG
+>seq_377351_x2
+ACCGGGTCAAAATTCGCATG
+>seq_377353_x2
+ATCACCGGGTGAACACTTGCAGC
+>seq_377355_x2
+TCACCGGGTGAACACTTGGAG
+>seq_377357_x2
+TCANCGGGTGAAAATTCGCATG
+>seq_377359_x2
+TCACCGGGGGTAAATCAGC
+>seq_377361_x2
+TCACAGGGTGTAAATCAGCT
+>seq_377363_x2
+AGCTGAGTTCGTCTTGGTAATA
+>seq_377365_x2
+ACCGGGTGAAAATTAGCATG
+>seq_377367_x2
+ACCGGGTGTACCTCAGCTAA
+>seq_377369_x2
+TCACAGGGTGAAAATTCGCA
+>seq_377371_x2
+GGTGGTTTTTCTCTGCAGTGATAAA
+>seq_377373_x2
+ACCGGGTGAAAACTAGCAGT
+>seq_377375_x2
+TCACCGGGTGTAAATCAACTTG
+>seq_377377_x2
+TCACCAGGTGGAAACTAGCA
+>seq_377379_x2
+TCACCGGGAGAAAGACTGGAGT
+>seq_377381_x2
+ACCGGGTGGAAACTAGCATT
+>seq_377383_x2
+TCACCGGGTGGAAAGTAGC
+>seq_377385_x2
+ACCTGGTGAACACTTGCAGT
+>seq_377387_x2
+CGCCAATTTTCGCTTCAGTGCTAT
+>seq_377389_x2
+AGCTGATTTCGTCTTCGTAATA
+>seq_377391_x2
+TCACCGGGAGAAAAACTGGCGT
+>seq_377393_x2
+ACCGGGTGAACACGTGCAGT
+>seq_377395_x2
+TCACCGGGTGTGAATCAGCTTG
+>seq_377397_x2
+TCACCGTGTGAACACTTGCA
+>seq_377399_x2
+TCACCGGGTGTAAATCAGCATG
+>seq_377401_x2
+TCACCGGGTGGAAACTAGCAGTGGCG
+>seq_377403_x2
+CACCGGGAGAAAAACTGGAGT
+>seq_377405_x2
+TCACCGGGTGAAGACTTGCA
+>seq_377407_x2
+TCGGGTGAACACTTGCAGT
+>seq_377409_x2
+TCACCGGGGGAAAATTCGCA
+>seq_377411_x2
+TCACCGGGTGAACACTTGCAGTGGTTC
+>seq_377413_x2
+CGAAAAGGGGAGCAACGAAAAG
+>seq_377415_x2
+ACCGGGTGGAAACTCGCAGT
+>seq_377417_x2
+TCACCGGGTGGAACCTAGCA
+>seq_377419_x2
+TCACCGGGTAGAAACTAGCA
+>seq_377421_x2
+TCACCGGGTGGAAACTAGCAGTGAC
+>seq_377423_x2
+ACGAAAAGGAGATCTGGCACTG
+>seq_377425_x2
+TCACAGGGAGAAAAACTGGAG
+>seq_377427_x2
+TCACCGGGTGGAAACTAGCAGTGT
+>seq_377429_x2
+TCACCGGCAGAAAAACTGGAGT
+>seq_377431_x2
+ATCACCGGGTGGAAACTAGCAGTT
+>seq_377433_x2
+TGACCGGGTGTAAATCAGCTTG
+>seq_377435_x2
+TCACCGGGTCAACACTTGCAG
+>seq_377437_x2
+TCAGCGGGTGAACACTTGCAG
+>seq_377439_x2
+CACCGGGTGAAAAATCACCTAT
+>seq_377441_x2
+ACCAGGTGAACACTTGCAGT
+>seq_377443_x2
+TCACCGGGCGGAAACTAG
+>seq_377445_x2
+TCACCGGGTGAAGACTTG
+>seq_377447_x2
+TCACCGGGTGAACACTTGCAGTGATC
+>seq_377449_x2
+TGGGGGTGTCCGTTGCGGTGCTA
+>seq_377451_x2
+TCACCGGGTGGAAACTAGA
+>seq_377453_x2
+TCACCGAGAGAAAAACTGGAGT
+>seq_377455_x2
+CACCGGGGGTACATCAGCTAA
+>seq_377457_x2
+ACCGGGTGTAAACTAGCAGT
+>seq_377459_x2
+GGTGGTTTTTCTCTGCAGTGCTA
+>seq_377461_x2
+CACCGGGTGAACACTTCCAGT
+>seq_377463_x2
+GGTGGTTTTTTTCTGCAGTGATA
+>seq_377465_x2
+TCACCGGGAGAAAAACAGGAGT
+>seq_377467_x2
+CACCGGGTGTACATCAGCTAAG
+>seq_377469_x2
+AGCGGGTGTACATCAGCTAA
+>seq_377471_x2
+CACCGGGGGAAAATTCGCATG
+>seq_377473_x2
+TCACCGGGTGAACACGTGCA
+>seq_377475_x2
+CAACGGGTGGAAACTAGCAGT
+>seq_377477_x2
+TCACCGGGTGTACATCAA
+>seq_377479_x2
+ATCACCGGGTGGAAACTAGCAG
+>seq_377481_x2
+TCACCGGGAGAAAACCTGGAGT
+>seq_377483_x2
+TCACCGGGTGTAAGTCAGCTTG
+>seq_377485_x2
+TCACCGGGTGGACATCAGCT
+>seq_377487_x2
+ACCGGGTGGACACTAGCAGT
+>seq_377489_x2
+ATCACCGGGTGTACATCAGCTAAT
+>seq_377491_x2
+ACCGGGCGGAAACTAGCAG
+>seq_377493_x2
+ACCTGATTTCGTCTTGGTAATA
+>seq_377495_x2
+TCACCGGGTGTCAATCAGCTTG
+>seq_377497_x2
+TCACCGGGTGAAAATTGGCAT
+>seq_377499_x2
+ACCGGGTGTACATCACCTAA
+>seq_377501_x2
+TCACCGGGTGTACATCAACTA
+>seq_377503_x2
+TCACCGGGTATAAATCAGCTTG
+>seq_377505_x2
+TACCGGGTGGAAACTAGCAGT
+>seq_377507_x2
+TCACCGGGTGGATACTAGCAGTG
+>seq_377509_x2
+CTCACCGGGTGTAAATCAGCTT
+>seq_377511_x2
+TTCACCGGGTGGAAACTAGCAGT
+>seq_377513_x2
+TCACAGGGTGGAAACTAGC
+>seq_377515_x2
+TCACCGGGTGAACCCTTGCAG
+>seq_377517_x2
+TCACCGGGAGCAAAACTGGAG
+>seq_377519_x2
+ANCGGGTGGAAACTAGCAGT
+>seq_377521_x2
+ATCACCGGGTGAACACTTGAAGT
+>seq_377523_x2
+TCACCGGCAGAAAAACTGGAG
+>seq_377525_x2
+AGCTGATTTCGTATTGGTAATA
+>seq_377527_x2
+ATCACCGGGTGAACACTTGCAGTA
+>seq_377529_x2
+ATCACCGGGAGAAAAACTGGAGTT
+>seq_377531_x2
+TCACCGGGTGCAAACTAGCA
+>seq_377533_x2
+AGTGGATGTATGCCATGATGAT
+>seq_377535_x2
+CACCGGGTGTACATCAGCTAAC
+>seq_377537_x2
+ACCCGGTGGAAACTAGCA
+>seq_377539_x2
+TCACCGGGTGGAAACTAGT
+>seq_377541_x2
+TCACCGGATGAACACTTGCA
+>seq_377543_x2
+TCACCGGNTGGAAACTAGCAG
+>seq_377545_x2
+TCACCGGGTGTAAATCNGCTTG
+>seq_377547_x2
+TCACCGGGTGAACACTTGCAA
+>seq_377549_x2
+ACCGTGTGAACACTTGCAGT
+>seq_377551_x2
+TCACCGGGAGAANAACTGGAGT
+>seq_377553_x2
+TTACCGGGTGAACACTTGCA
+>seq_377555_x2
+TCATCGGGTGAACACTTGCA
+>seq_377557_x2
+TCACTGGGTGAACACTTGCA
+>seq_377559_x2
+TCNCCGGGTGGAAACTAGCAGT
+>seq_377561_x2
+TCACCGGGTGGAAACTACCA
+>seq_377563_x2
+ACACCGGGTGGAAACTAGCAG
+>seq_377565_x2
+TCACCGGGTGAACACTTGCG
+>seq_377567_x2
+TCCCCGGGAGAAAAACTGGAGT
+>seq_377569_x2
+ACCGGGTGTACATCTGCTAA
+>seq_377571_x2
+TCACCGGGTGAAAAACTGGAG
+>seq_377573_x2
+TCAGCGGGTGTAAATCAGCTTG
+>seq_377575_x2
+TCACCGGGTGGAAACTAGGAG
+>seq_377577_x2
+TCACCGGGTGGAAGCTAGCAG
+>seq_377579_x2
+ACCGGGAGTACATCAGCTAA
+>seq_377581_x2
+TCACCGGGTGAAAGTTCGCATG
+>seq_377583_x2
+ATCGGGTGGAAACTAGCAGT
+>seq_377585_x2
+ACCGGGTGTACATCAGCT
+>seq_377587_x2
+TCACCGGGTGTACATCAGCGA
+>seq_377589_x2
+ACCGGGTGGAAACCAGCAGT
+>seq_377591_x2
+TCACCGGGTCTAAATCAGCTTG
+>seq_377593_x2
+AGCGGGTGAACACTTGCAGT
+>seq_377595_x2
+TCACCGGGTGTACATCAGCTAAGT
+>seq_377597_x2
+CACCGGGTGTAAATCAGCTTG
+>seq_377599_x2
+TCACCGGGTGGAAACTAGTA
+>seq_377601_x2
+ACCGGTTGAACACTTGCAGT
+>seq_377603_x2
+TCACCGGGAGAAAAACTGGAC
+>seq_377605_x2
+CTCACCGGGTGAACACTTGCA
+>seq_377607_x2
+ACCGGGTGTACATCAGCTCA
+>seq_377609_x2
+ACCGGGTGAACACTAGCAGT
+>seq_377611_x2
+ACCGGGTGGACACTTGCAGT
+>seq_377613_x2
+TCACCGGGTTGAAACTAGCA
+>seq_377615_x2
+TAACCGGGTGAACACTTGCA
+>seq_377617_x2
+TCACGGGGTGTACATCAGCTAA
+>seq_377619_x2
+TCACCGGGTGGAAACTAGCAGTAGC
+>seq_377621_x2
+ACCGGGTGTAAATCAGCTTT
+>seq_377623_x2
+ACCGGGTGTACATCAGCTAT
+>seq_377625_x2
+TCACCGGGTGTATATCAGCTA
+>seq_377627_x2
+ATCACCGGGTGTACATCAGCTAAA
+>seq_377629_x2
+TCACCGGGTGAACACTTGCAGTGG
+>seq_377631_x2
+TCCCCGGGTGTAAATCAGCTTG
+>seq_377633_x2
+GCCTCTACAAGTTGTGATCGT
+>seq_377635_x2
+CACCGGGTGAACATCAGCTAA
+>seq_377637_x2
+GGTGGTTTTTCTCTGCCGTGATA
+>seq_377639_x2
+ATCACCCGGTGAACACTTGCAGT
+>seq_377641_x2
+ACCGGGTGAAAATGCGCATG
+>seq_377643_x2
+TGACCGGGTGGAAACTAGCA
+>seq_377645_x2
+CGCCAATTTTCGCTTCAGTGCT
+>seq_377647_x2
+TCACCGGGTCGAAACTAGCAG
+>seq_377649_x2
+CACCGGGTGAACACTTACAGT
+>seq_377651_x2
+TCACCGGGTGAGCACTTGCAG
+>seq_377653_x2
+TCACCGGGTGGAAACCAGCA
+>seq_377655_x2
+TCACCGGGAGAAAAACNGGAGT
+>seq_377657_x2
+GGTGGTTTTTCTCTGCAGTGAT
+>seq_377659_x2
+CCGGGTGTACATCAGCTAA
+>seq_377661_x2
+ACCGGGTGAACACTGGCAGT
+>seq_377663_x2
+AGCTGGTTTCGTCTTGGTAATA
+>seq_377665_x2
+AGCTGATTTCGTCTTGGTCATA
+>seq_377667_x2
+TCAGCGGGTGAACACTTGCA
+>seq_377669_x2
+ACCGGGTGAAAATTCGCATT
+>seq_377671_x2
+ACCGGGTAAACACTTGCAGT
+>seq_377673_x2
+ACCGGGAGAAAAACTGGAGTT
+>seq_377675_x2
+TCACCGGGTGGAAACTAGCAGTGCC
+>seq_377677_x2
+TCACCGGGTTTACATCAGCTA
+>seq_377679_x2
+AATCACCGGGTGTACATCAGCT
+>seq_377681_x2
+AGTGGATGGATGCCATGATGATA
+>seq_377683_x2
+TCACCGGGTGGAAACTAGAA
+>seq_377685_x2
+ACCGGGTGGAGACTAGCAGT
+>seq_377687_x2
+TCACCGGGTGAACACTTGCTGTG
+>seq_377689_x2
+TCACCGGGTGTACATCATCT
+>seq_377691_x2
+TCACCGGGTTAAAATTCGCAT
+>seq_377693_x2
+ACCGGGTGAAAATTCTCATG
+>seq_377695_x2
+TCACCGGGAGAAAAACTGGTGTA
+>seq_377697_x2
+TCACCGGATGTAAATCAGCTTG
+>seq_377699_x2
+CTATCACCGGGTGTACATCAGCT
+>seq_377701_x2
+TTACCGGGAGAAAAACTGGAGT
+>seq_377703_x2
+GCACCGGGTGTACATCAGCTA
+>seq_377705_x2
+ACCGGGTGTAAATCAGCTTA
+>seq_377707_x2
+TCACCGGGTGTAGATCAGCTTG
+>seq_377709_x2
+ATCACCGGGTGAACACTTGCCGT
+>seq_377711_x2
+ACCGGGAGGAAACTAGCAG
+>seq_377713_x2
+AACGGGTGAACACTTGCAGT
+>seq_377715_x2
+CACCGGGTGAACACTCGCAGT
+>seq_377717_x2
+TCACCGGGTGGAAACTCGC
+>seq_377719_x2
+GCACCGGGAGAAAAACTGGAGT
+>seq_377721_x2
+ACCGGGTGAACACTTGTAGT
+>seq_377723_x2
+TCGCCGGGTGAACACTTGCAG
+>seq_377725_x2
+CCACCGGGAGAAAAACTGGAGT
+>seq_377727_x2
+TCACCGGCTGTAAATCAGCTTG
+>seq_377729_x2
+TCACCGGGTGATCACTTGCAG
+>seq_377731_x2
+CACCGGGTGAAAAATCACCTA
+>seq_377733_x2
+TCACCGGGAGAACAACTGGAGT
+>seq_377735_x2
+TCACCGGGTGTAGATCAGCTA
+>seq_377737_x2
+TCNCCGGGTGTACATCAGCTAA
+>seq_377739_x2
+TCACCGGGAGAGAAACTGGAGT
+>seq_377741_x2
+TCACCGGGTGTAAATCAGTTTG
+>seq_377743_x2
+ACCCGGTGAAAATTCGCATG
+>seq_377745_x1
+TCCGGGTGTACATCAGCTAA
+>seq_377746_x1
+CACGAAAAGGGGAGCAGAACGA
+>seq_377747_x1
+ATCACCGGGTGAACAATTGCAG
+>seq_377748_x1
+ATATCACCGGGTGTACATCAGC
+>seq_377749_x1
+TCACCGGGTGTACATCAGCTAAGC
+>seq_377750_x1
+AGCTGATTTCGTCTTGGTCA
+>seq_377751_x1
+TCACCGGGCGTACATCAGC
+>seq_377752_x1
+TCACCGGGTGGAAAATAG
+>seq_377753_x1
+TCACCGGGTGTAAATCATCTT
+>seq_377754_x1
+GGGAGACACGAAAAGGGGA
+>seq_377755_x1
+CGGGTGAAAATTCGCATG
+>seq_377756_x1
+TCACCGTGTGAAAATTCGCAT
+>seq_377757_x1
+TCACCGGGTCAACACTTGCA
+>seq_377758_x1
+ACCGGGTGGAAACTAGCCG
+>seq_377759_x1
+TCACCGGGTGTACATCAGTT
+>seq_377760_x1
+ATCACCGGGTGTACATCAG
+>seq_377761_x1
+TCACCGGGTGAAAATTCGC
+>seq_377762_x1
+ATCAACGGGTGAACACTTGCAG
+>seq_377763_x1
+AGTGGATGTATGCCATTATGATA
+>seq_377764_x1
+TACCGGGTGTACATCAGCTAA
+>seq_377765_x1
+ACCGGGTGAAAATTCCCATG
+>seq_377766_x1
+CAGCTGATTTCGTCTTGGTAAT
+>seq_377767_x1
+ACCGGGTGGATACTAGCAGT
+>seq_377768_x1
+ACCGGGTGGAAACTAGCAGTG
+>seq_377769_x1
+ATCACCGGGAGTACATCAGCTAA
+>seq_377770_x1
+TCACCGGGTGTACATCNG
+>seq_377771_x1
+TCACCGGGTGTCCATCAGCTA
+>seq_377772_x1
+ATCAACGGGTGAACACTTGCAGT
+>seq_377773_x1
+TCACCGGGTGAACACTTGCAGTGGA
+>seq_377774_x1
+TGTGGGTGTCCGTTGCGGTGTTA
+>seq_377775_x1
+ATCACCGGGAGAAAAACTGGAG
+>seq_377776_x1
+TCACCGCGTGTAAATCAGCTT
+>seq_377777_x1
+TCTCACCGGGTGGAAACTAGCAGT
+>seq_377778_x1
+TCACCGGGTGTAAATCGGCTT
+>seq_377779_x1
+TCACCGGGTGAACAGTTGCAG
+>seq_377780_x1
+TGTTAAGCGTATCTTCTCGAA
+>seq_377781_x1
+AGCTGATTTCGTCTTGTTAA
+>seq_377782_x1
+ATCACCGGGTGAACACTTGCTGT
+>seq_377783_x1
+ATCACCGGCTGAACACTTGCAGT
+>seq_377784_x1
+ATCACCGGGTGTACATCATCTAA
+>seq_377785_x1
+TCACCGGGTGATAATTCGCA
+>seq_377786_x1
+TCACCGGGTGAACACTTGCGG
+>seq_377787_x1
+TGTGGGTGTCCGGTGCGGTGCTA
+>seq_377788_x1
+TCACCGGGTGAACACTNGCAG
+>seq_377789_x1
+ACCGGGTGAACACTTGCATT
+>seq_377790_x1
+TCACCGGGTGAAAATTCGTA
+>seq_377791_x1
+ACCGGGTGAAAATTCGCATC
+>seq_377792_x1
+AGATGATTTCGTCTTGGTAAT
+>seq_377793_x1
+ATCACCGGGGGGAAACTAGCAGT
+>seq_377794_x1
+TGTGGGTGTCCGTTGTGGTGCTA
+>seq_377795_x1
+CACCAGGTGAACACTTGCAGT
+>seq_377796_x1
+TAATATCGTCCTTCTTCAT
+>seq_377797_x1
+ACCGGGTGGAAACTAGGAGT
+>seq_377798_x1
+TCACCGGGAGAAAAANTGGAGT
+>seq_377799_x1
+TCACCGGGTGTACATAAGCT
+>seq_377800_x1
+ATCACCGGTTGAACACTTGCAGT
+>seq_377801_x1
+TGGTTTTTCTCTGCAGTGTTA
+>seq_377802_x1
+TCACCGGGTGAACACCTGCA
+>seq_377803_x1
+TCACCGGGTGAACAATCACCTA
+>seq_377804_x1
+CACCGGATGAACACTTGCAGT
+>seq_377805_x1
+ACCCGGTGAACACTTGCAG
+>seq_377806_x1
+TCACCGGGTGGACACTAGCAGTG
+>seq_377807_x1
+TCACCGGGTGGAAACTAGCAGAGGC
+>seq_377808_x1
+TCACCGGGTGTAAATCAGGTTG
+>seq_377809_x1
+GAAAAGGGGAGACACGAAAAGG
+>seq_377810_x1
+CGGGCGAACACTTGCAGT
+>seq_377811_x1
+CCCGGGTGGAAACTAGCAGT
+>seq_377812_x1
+TCACCGGGTGTAAAACAGCTT
+>seq_377813_x1
+TCACCGGGCGGAAACTAGC
+>seq_377814_x1
+ACCGGGTGGAAACTATCAG
+>seq_377815_x1
+TCACCGGGAGAAATACTGGAG
+>seq_377816_x1
+ACCGGGTGGAAACTAGCAC
+>seq_377817_x1
+CTATCACCGGGTGTACATCAGCA
+>seq_377818_x1
+CTCACCGGGTGGAAACTAGCA
+>seq_377819_x1
+TCACCGGGAGAAAAACTGGAT
+>seq_377820_x1
+TCACCAGGTGAAAAATCACCTA
+>seq_377821_x1
+TCACCGGGTGAACCCTTGCA
+>seq_377822_x1
+TCAACGGGTGAACACTTGCAGTG
+>seq_377823_x1
+TCACCGGGTGCACATCAGCT
+>seq_377824_x1
+GCACCGGGTGAACACTTGCA
+>seq_377825_x1
+CACCGGGTGTAAATCAGCTTT
+>seq_377826_x1
+TCACCGGGCGTACATCAGCT
+>seq_377827_x1
+CACTGGGTGAAAATTCGCATG
+>seq_377828_x1
+ACGAAAAGGAGATCTGGCA
+>seq_377829_x1
+TCACCGGGTGATCACTTGCA
+>seq_377830_x1
+TCACCGGGTGACCACTTGCA
+>seq_377831_x1
+TGTCACCGGGTGTAAATCAGCT
+>seq_377832_x1
+CTATCACCGGGTGTACATCAGTT
+>seq_377833_x1
+TCACCGGGTGCACATCAGC
+>seq_377834_x1
+AAAAGGGGAGCTGGCACTGTG
+>seq_377835_x1
+CACCGGGTGAACACNTGCAGT
+>seq_377836_x1
+AGTGGATGTATGCCATGTTGATA
+>seq_377837_x1
+TGTTGGTGTCCGTTGCGGTGCTA
+>seq_377838_x1
+TCACCGGGTGAACACTTNCA
+>seq_377839_x1
+NCACCGGGTGGAAACTAGCA
+>seq_377840_x1
+CAAAAAGGGGATCTGCGAAT
+>seq_377841_x1
+TCACCGGGTGCAAATCAGCTT
+>seq_377842_x1
+TCACCGGGAGAAGAACTGGAGT
+>seq_377843_x1
+TCACCGGGTGAACACTTNCAGT
+>seq_377844_x1
+ATCACCGGGTGAACACTTGCAT
+>seq_377845_x1
+TCACCGGGGGTACATCAGC
+>seq_377846_x1
+ACCGGGGGTAAATCAGCTTG
+>seq_377847_x1
+ACCGGGTGAATACTTGCAGT
+>seq_377848_x1
+TCACCGGGTGGAAACTNGCA
+>seq_377849_x1
+TCACCGGGTGTAAATCAGCTTGGC
+>seq_377850_x1
+TCACCGGNTGAACACTTGCA
+>seq_377851_x1
+NCACCGGGTGAAAATTCGCATG
+>seq_377852_x1
+AAGCTGATTTCGTCTTGGTAAT
+>seq_377853_x1
+TAACCGGGTGAAAAATCACCTA
+>seq_377854_x1
+TGGTTTTTCTCTGCAGTGATAGA
+>seq_377855_x1
+ATCACCGGGTGAACACTTGCAGA
+>seq_377856_x1
+AGCTGATTTCGCCTTGGTAATA
+>seq_377857_x1
+CACCGGGTGAACATTTGCAG
+>seq_377858_x1
+TCACCGGGTGAACACTTGCAGTCG
+>seq_377859_x1
+ACCAGGTGGAAACTAGCAGT
+>seq_377860_x1
+ACCGGGTGTATATCAGCTAA
+>seq_377861_x1
+CCGGGTGAACACTTGCAG
+>seq_377862_x1
+CTATCACCGGGTGTACATCAG
+>seq_377863_x1
+AGCTGATTACGTCTTGGTAAT
+>seq_377864_x1
+TCACCGGGTGTACTTCAGCTA
+>seq_377865_x1
+TCACCGGGTGTACATCAAC
+>seq_377866_x1
+AAGGGGATCTGCGAGAAGGGG
+>seq_377867_x1
+ACCGGGAGCAAAACTGGAGT
+>seq_377868_x1
+TCAACGGGAGAAAAACTGGAGT
+>seq_377869_x1
+ACCGGGTGTACATCAGCTAAT
+>seq_377870_x1
+CCGGGTGTAAATCAGCTTA
+>seq_377871_x1
+TCACCGGGTGAAAAATAACCTA
+>seq_377872_x1
+CGGGAGAAAAACTGGAGT
+>seq_377873_x1
+ACCGGGTGTAAATCTGCTTG
+>seq_377874_x1
+TCACCGGGAAAAAAACTGGAGT
+>seq_377875_x1
+TCACCGGGTGGAAATTAG
+>seq_377876_x1
+AGCTGTTTTCGTCTTGGTAA
+>seq_377877_x1
+TCACCGGGAGAAAAACTG
+>seq_377878_x1
+TCACCGGGTCGAAACTAG
+>seq_377879_x1
+TCACCGGGTGAAAAACTG
+>seq_377880_x1
+TCACCGGGTGTTAATCAGCTTG
+>seq_377881_x1
+ACCGGGTGGAAACGAGCAGT
+>seq_377882_x1
+TGATGGTTTCTTCCACAGTGGT
+>seq_377883_x1
+TTTCTTGTCCAATACATCT
+>seq_377884_x1
+TCACCGGGTGTAAATCAGCTTGGCG
+>seq_377885_x1
+TCACCGGGTGGACACTAGC
+>seq_377886_x1
+TCACCGGGAGAACAACTGGAG
+>seq_377887_x1
+ACCGTGTGTACATCAGCTAA
+>seq_377888_x1
+GGGATCTGCGGAAAGGGGAGA
+>seq_377889_x1
+ACGGGGTGGAAACTAGCAGT
+>seq_377890_x1
+CACCGGGTGAAACTTCGCATG
+>seq_377891_x1
+TCACCAGGTGAACACTTGCA
+>seq_377892_x1
+TCACCGGGAGCAAAACTGGAGTA
+>seq_377893_x1
+CGAAAAGGGGATCTGCAAAAAG
+>seq_377894_x1
+AGCTGATTTCGTATTGGTAAT
+>seq_377895_x1
+ATCACCGGGAGAAAAACTGGAGTAA
+>seq_377896_x1
+TCACCGGGTGAACACTTGCAGTGGCC
+>seq_377897_x1
+TCACCGGGTGAAGACTTGC
+>seq_377898_x1
+TCACCGGGTGGAAACTAGCAGTGACT
+>seq_377899_x1
+CACCGGGTGAACACTTGCA
+>seq_377900_x1
+CNCCGGGTGAACACTTGCAGT
+>seq_377901_x1
+TGACCGGGAGAAAAACTGGAGT
+>seq_377902_x1
+AGCTGATTTCGTGTTGGTAATA
+>seq_377903_x1
+AGTGGAGCAGAACGAAAA
+>seq_377904_x1
+CGCCGGGTGAACACTTGCAGT
+>seq_377905_x1
+NCCGGGTGTACATCAGCTAA
+>seq_377906_x1
+TCACCGGGAGAAAAACTGGATT
+>seq_377907_x1
+TCACCGGGTGAAAATTCGCCT
+>seq_377908_x1
+CACCGGGTGGAAACTAGCATT
+>seq_377909_x1
+CGAAAAGGGGAGCAGAACGA
+>seq_377910_x1
+AAAAAGGGGATCTGTGAAAAGGGGAG
+>seq_377911_x1
+TCACCGGGTCTACATCAGCTA
+>seq_377912_x1
+TNACCGGGTGAACACTTGCA
+>seq_377913_x1
+TCACCGGGTGGAAACTAGCAGTGGA
+>seq_377914_x1
+TCACCGGGTGTAAATCAGCCT
+>seq_377915_x1
+GAACTATCACCGGGTGGAAACTAGCAG
+>seq_377916_x1
+TTCGCAAAAAAAAAAAAC
+>seq_377917_x1
+TTCACCGGGTGAACACTTGCAGT
+>seq_377918_x1
+TCACCGGGTGAACACTTT
+>seq_377919_x1
+AGCTAATTTCGTCTTGGTAATAA
+>seq_377920_x1
+TCACCGGGTGTAAATCAGCTAG
+>seq_377921_x1
+CGCCGGGTGAACACTTGCAG
+>seq_377922_x1
+TCAACGGGTGTACATCAGCTA
+>seq_377923_x1
+TCACCGGGTGGAAAATAGCAGTG
+>seq_377924_x1
+TCACCGGGAGTAAAACTGGAG
+>seq_377925_x1
+CACCGGGTGGAAACTAGAAGT
+>seq_377926_x1
+TCACCGGGTGTACATCTGCTA
+>seq_377927_x1
+AAAGGGGAGCAGAACGAAAAGGG
+>seq_377928_x1
+CACCGGGTGAACACGTGCAGT
+>seq_377929_x1
+TCACCGGGTGTAAATAAGC
+>seq_377930_x1
+ACCGGATGAACACTTGCAGT
+>seq_377931_x1
+TGTGGGTGTCCGTTGCGGTGAT
+>seq_377932_x1
+AGCTGCTTTCGTCTTGGTAA
+>seq_377933_x1
+CACCTGGTGTACATCAGCTAA
+>seq_377934_x1
+TCACCGGGTGAAAATTCACAT
+>seq_377935_x1
+AGCTGATTTCGTGTTGGTAATAA
+>seq_377936_x1
+CGCCAATTTTCGCTTCAGCGC
+>seq_377937_x1
+TCACCGGGTGAAAATTAGCA
+>seq_377938_x1
+GGTGGTTTTTCTCTGTAGTGATA
+>seq_377939_x1
+ACCGGGTATACATCAGCTAA
+>seq_377940_x1
+AGCTGATTTCGTCTTGATAAT
+>seq_377941_x1
+TATCACCGGGTGAAAAATCACCT
+>seq_377942_x1
+TCACCGGGTGAACATCAGCT
+>seq_377943_x1
+CAACGGGTGAACACTTGCAG
+>seq_377944_x1
+AACGGGTGGAAACTAGCAG
+>seq_377945_x1
+TCACCGGGAGACAAACTGGAGT
+>seq_377946_x1
+TCACCGGGTGGAAACGAGCA
+>seq_377947_x1
+TCGCCGGGTGGAAACTAGCA
+>seq_377948_x1
+TTTCAAAAAAAAAAAAAA
+>seq_377949_x1
+TCACCGGGTGAACACGTGCAGTG
+>seq_377950_x1
+AGTGGATGTATTCCATGATGATA
+>seq_377951_x1
+TCACCGGGGGAACACTTG
+>seq_377952_x1
+TCACCGGGTGTAAATTCGCAT
+>seq_377953_x1
+TGGTTTTTCTCTGCAGTGATA
+>seq_377954_x1
+ATCACCGGGTGAACACTCGCAGT
+>seq_377955_x1
+GGGAGCAGAACGAAAAGG
+>seq_377956_x1
+TGCTGGTTTCTTCCACAGTGG
+>seq_377957_x1
+TCACCGGGTGGGAACTAGC
+>seq_377958_x1
+ATCACCGCGTGAACACTTGCAGT
+>seq_377959_x1
+TCAACGGGTGGAAACTAG
+>seq_377960_x1
+TCACCGGGAGAAACACTGGAGT
+>seq_377961_x1
+TTTCAAAAAACAACGTGCG
+>seq_377962_x1
+ATCAACGGGTGGAAACTAGCAGT
+>seq_377963_x1
+ATGACCGGGTGAACACTTGCAGT
+>seq_377964_x1
+CACCGGGTGTACNTCAGCTAA
+>seq_377965_x1
+ACCGGGCGAACACTTGCAG
+>seq_377966_x1
+CGCCAATTTTCGCTTCAGTTCT
+>seq_377967_x1
+TCACCGGGTGTACATCACCTA
+>seq_377968_x1
+ATCAACGGGTGTACATCAGCTAA
+>seq_377969_x1
+AGTGGATGTATGCCATGAAGATA
+>seq_377970_x1
+ATCACCGGGTGGAAACTAGCAGG
+>seq_377971_x1
+TCAACGGGTGAACACTTG
+>seq_377972_x1
+ACCGGGAGAAAAACGGGAGT
+>seq_377973_x1
+CCCGGGTGAACACTTGCAGT
+>seq_377974_x1
+TCACCGGGGGGAAACTAG
+>seq_377975_x1
+AGGAGATCTGGCACTGTG
+>seq_377976_x1
+ACCGGGTGCAAACTAGCAGT
+>seq_377977_x1
+TCACCGGGTGAACACTTGCAGGG
+>seq_377978_x1
+TCACCCGGTGTAAATCAGCTTG
+>seq_377979_x1
+TCACCGGGTGTANATCAGC
+>seq_377980_x1
+ACCGGGCGAAAAATCACCTA
+>seq_377981_x1
+TCACCGGGTGTATATCAGCT
+>seq_377982_x1
+AGTGGATGTATGCTATGATGATA
+>seq_377983_x1
+ACCGGNTGGAAACTAGCAGT
+>seq_377984_x1
+TCACCGGGTGTACATCATC
+>seq_377985_x1
+TCACTGGGTGAAAATTCGCAT
+>seq_377986_x1
+ACCGGGTGAACACTTGGAGT
+>seq_377987_x1
+AGTGGATGTATGCCATGATGGTA
+>seq_377988_x1
+ACCGGGTGGAAACTAGCANT
+>seq_377989_x1
+TCACCGGGTGTAAACCAGCTT
+>seq_377990_x1
+CCCCGGGTGAACACTTGCAGT
+>seq_377991_x1
+CGGGTGAAAAATCACCTA
+>seq_377992_x1
+GGGTAGAGGACGACACTGCCA
+>seq_377993_x1
+TCACCGGGTGAAAATTCGCAG
+>seq_377994_x1
+CACCGGGTGGAAACTAGCA
+>seq_377995_x1
+GCACCGGGTGTAAATCAGCTT
+>seq_377996_x1
+GGCTAGATCTTTTCCACT
+>seq_377997_x1
+ATCACCGGGTGAATACTTGCAG
+>seq_377998_x1
+ACCGGTTGAACACTTGCAG
+>seq_377999_x1
+ACCGGGTGGAAGCTAGCAGT
+>seq_378000_x1
+CTCACCGGGTGTACATCAGCTA
+>seq_378001_x1
+ATCACCGGCAGAAAAACTGGAGT
+>seq_378002_x1
+ACCGGGTGAACACTTACAGT
+>seq_378003_x1
+CACCGGGTGAACACTTGCAGCG
+>seq_378004_x1
+ACCGGGTGTACATCATCTAA
+>seq_378005_x1
+TCACCGGGTGACCACTTG
+>seq_378006_x1
+TCAACGGGTGGAAACTAGC
+>seq_378007_x1
+TGAGGGTGTCCGTTGCGGTGCTA
+>seq_378008_x1
+TTACCGGGTGAACACTTGCAGTGGT
+>seq_378009_x1
+TTCACCGGGTGAAAATTCGCATG
+>seq_378010_x1
+GGTGGTTTTTCTGTGCAGTGATAG
+>seq_378011_x1
+CCGATCACCGGGTGTACATCAGCT
+>seq_378012_x1
+CTCTGTGATCCAGGTCCTGT
+>seq_378013_x1
+TCACCGGGTGGAAACTAC
+>seq_378014_x1
+TCACCGGGAGAAAAAGTGGAG
+>seq_378015_x1
+CTCTACAAGTTGTGATCGTGAG
+>seq_378016_x1
+CACCGGGTCAACACTTGCAGT
+>seq_378017_x1
+AGCTGCTTTCGTCTTGGTAATA
+>seq_378018_x1
+CACCGGGTGAACNCTTGCAGT
+>seq_378019_x1
+TCACCGGGTGTAAATTCGCA
+>seq_378020_x1
+ACCGGGTGCACATCAGCTAA
+>seq_378021_x1
+AACACCGGGTGTACATCAGCTAA
+>seq_378022_x1
+ACCGGGAGAAAAACTGGAGC
+>seq_378023_x1
+AGCTGATTTCGTCTTGGTTAT
+>seq_378024_x1
+AACGGGTGTAAATCAGCTTG
+>seq_378025_x1
+TCACCGGGTTGAAACTAGCAGTG
+>seq_378026_x1
+ACCGGGTGAACACTTGCAGTTG
+>seq_378027_x1
+GTTGTGATCGTGAGGCCCCTTC
+>seq_378028_x1
+TCACCGCGTGAAAATTCGCAT
+>seq_378029_x1
+GGCTGGATTTTGTAAGCT
+>seq_378030_x1
+CACCGGGTGAACACTGGCAGT
+>seq_378031_x1
+AGCTCGTCATTGAGATTA
+>seq_378032_x1
+TCACCGGGAGAAATACTGGAGT
+>seq_378033_x1
+TCAACGGGTGAAAATTCGCAT
+>seq_378034_x1
+TCACCGGGTGCACACTTGCA
+>seq_378035_x1
+CCATCACCGGGTGTACATCAGCTAA
+>seq_378036_x1
+TCACCCGGTGAACACTTGCAG
+>seq_378037_x1
+ATCACCGAGTGAACACTTGCAGT
+>seq_378038_x1
+TGTGGGTGTCAGTTGCGGTGCTA
+>seq_378039_x1
+TCACCGGGTGTACATCAGCTAAGGC
+>seq_378040_x1
+TCACCGGGNGTACATCAGCTAA
+>seq_378041_x1
+TCACCGGGAGAAAATCTGGAGT
+>seq_378042_x1
+CGCCAATTTTCGCTTCAGGGCTA
+>seq_378043_x1
+GAAAAGGGGAGCAGAACGAAGA
+>seq_378044_x1
+TCACCGGGTGTACAGCAGCTA
+>seq_378045_x1
+ACCGGGTGAAAAATCGCATG
+>seq_378046_x1
+ATCACCGGGTGAACACGTGCA
+>seq_378047_x1
+TCACCGGGTGTAAATGAGCTTG
+>seq_378048_x1
+TCACCGGATGTACATCAGCTA
+>seq_378049_x1
+TCACCGGNTGAAAATTCGCATG
+>seq_378050_x1
+TNACCGGGTGGAAACTAGCA
+>seq_378051_x1
+ATCACCGGGTGGAAAATAGCAGT
+>seq_378052_x1
+AGCGGGTGAACACTTGCAG
+>seq_378053_x1
+ACGAAAAGGGGAGCAGAACGA
+>seq_378054_x1
+GGTGGTTTTTCTCTGCAGTGATT
+>seq_378055_x1
+CGGGAGAAAAACTGGAGTT
+>seq_378056_x1
+TCACCGGGTGGGAACTAGCA
+>seq_378057_x1
+TGCGCCTTTGAAGAGTACTGTA
+>seq_378058_x1
+TCACCGGGTGAAAATTCGCAGGG
+>seq_378059_x1
+TCACCGGGAGATAAACTGGAGT
+>seq_378060_x1
+TATCACCGGGTGAACACTTGCAGT
+>seq_378061_x1
+TGACCGGGTGTAAATCAGCTT
+>seq_378062_x1
+AGTGGATGTATGCCATGATGCTA
+>seq_378063_x1
+TCACCGGGAGAAAAACTGGAGAA
+>seq_378064_x1
+GGTGGTTTTTCTCTGCAGTGATAG
+>seq_378065_x1
+TCACCGGGTGAAAATTCGCATGGC
+>seq_378066_x1
+GGTGGTTTTTCTCTGCAGCGATA
+>seq_378067_x1
+ATCACCGGATGAACACTTGCAGT
+>seq_378068_x1
+TCACCGGGTGAACACTTGCAGTGGTCA
+>seq_378069_x1
+TGACCGGGTGAAAATTCGCAT
+>seq_378070_x1
+AATCACCGGGTGGAAACTAGC
+>seq_378071_x1
+TAAGCGTCGCGTGTTGTTAAG
+>seq_378072_x1
+TCANCGGGTGGAAACTAGCAG
+>seq_378073_x1
+ACCGGGTGGAAACTTGCAGT
+>seq_378074_x1
+TCACCGGGTGAANACTTGCA
+>seq_378075_x1
+TCACCGGGAGAAAAACTGGAGTG
+>seq_378076_x1
+ACCGGGTGAACACCTGCAGT
+>seq_378077_x1
+AGCTGACTTCGTCTTGGTAATA
+>seq_378078_x1
+TCACCGGGTGGAAACTAGCAGTGGT
+>seq_378079_x1
+ATCACCGGGTGGAAACTAGCAGTA
+>seq_378080_x1
+TCACCGGGTGGACACTTGCA
+>seq_378081_x1
+TCACCGGGTGAACACTTGCAGTAG
+>seq_378082_x1
+CTCACCGGGTGTAAATCAGCTTG
+>seq_378083_x1
+CCGGGTGAAAAATCACCTA
+>seq_378084_x1
+AACTGATTTCGTCTTGGTAATA
+>seq_378085_x1
+TCACCCGGAGAAAAACTGGAGT
+>seq_378086_x1
+TCACCAGGAGAAAAACTGGAGT
+>seq_378087_x1
+TCACCGGGNGGAAACTAGCA
+>seq_378088_x1
+TCACCGGGTGAAAATTCNCATG
+>seq_378089_x1
+GGGAGCAGAACGAAAAGGG
+>seq_378090_x1
+TGTGGGTGTCCGTTGAGGTGCT
+>seq_378091_x1
+TCACCGAGTGAAAAATCACCTA
+>seq_378092_x1
+AGGGGAGCAGAGCGAAAAG
+>seq_378093_x1
+TCACCGGGTGGAAACTAGCAGTGG
+>seq_378094_x1
+ACCGGGAGAAAATTCGCATG
+>seq_378095_x1
+ACACCGGGTGAACACTTG
+>seq_378096_x1
+CTATCACCGGGTGTACAGCAGCT
+>seq_378097_x1
+CCACCGGGTGTACATCAGCTA
+>seq_378098_x1
+TCACCGGGTGAAAATTCTCAT
+>seq_378099_x1
+GAAAAAAAAACCAAAAAA
+>seq_378100_x1
+ACAAGTTGTGATCGTGATGCC
+>seq_378101_x1
+ACCGGGTGAAGACTTGCAGT
+>seq_378102_x1
+ACCGGGAGAACACTTGCAG
+>seq_378103_x1
+TCNCCGGGTGAACACTTGCAG
+>seq_378104_x1
+AGTGGATGTTTGCCATGATGATA
+>seq_378105_x1
+TGTGGGTGTCCGTTGCGG
+>seq_378106_x1
+TCACCGGGTGAAAACTTG
+>seq_378107_x1
+TTACCGGGTGGAAACTAGCA
+>seq_378108_x1
+ATCACCGGGGGAAAAATCACCTA
+>seq_378109_x1
+GCACCGGGTGGAAACTAGCAGTG
+>seq_378110_x1
+TCACTGGGTGTACATCAGC
+>seq_378111_x1
+CACCGGGTGAACACTAGCAGT
+>seq_378112_x1
+TCACCGGGTGGANACTAG
+>seq_378113_x1
+TCACCGGGTGGAAACTAGCAGTGGAT
+>seq_378114_x1
+ACCGGGTGGAAGCTAGCA
+>seq_378115_x1
+ATCACCGGGTGGAAACTAGCA
+>seq_378116_x1
+ACGGGTGGAAACTAGCAGT
+>seq_378117_x1
+AGCTGATTTCGACTTGGTAATA
+>seq_378118_x1
+TAACCGGGTGAACACTTGCAGTG
+>seq_378119_x1
+ACCGGGTGAAAATTCGCACG
+>seq_378120_x1
+TCACCGGGTGTAAATCAGCG
+>seq_378121_x1
+ACCGGGCGAAAATTCGCATG
+>seq_378122_x1
+TGACCGGGAGAAAAACTGGAGTA
+>seq_378123_x1
+TTACCGGGTGAAAAATCACCTA
+>seq_378124_x1
+CCACCGGGTGGAAACTAGC
+>seq_378125_x1
+TCACCGGGTGTACTTCAGCT
+>seq_378126_x1
+AGTGGATGTATGCCATGATGATG
+>seq_378127_x1
+TCACCGGGTGTAAATCAGCCTG
+>seq_378128_x1
+TCACCGGGTGGAATCTAGCA
+>seq_378129_x1
+TCACCGGGTGTACATCAGCTAAAG
+>seq_378130_x1
+ATCACCGGGAGTAAAACTGGAGT
+>seq_378131_x1
+GGTGGTTTTTCTCTGCAGTGATAT
+>seq_378132_x1
+TCACGGGGTGAACACTTGCAG
+>seq_378133_x1
+TCACCGGGTGGAAACTAGCAGTCGC
+>seq_378134_x1
+GGGATCTGGCACCGTGCC
+>seq_378135_x1
+TCACCGGGTGGAAACTAGCAGAGG
+>seq_378136_x1
+TGCGCCTTTAAAGAGTACTGTA
+>seq_378137_x1
+AGCTGATTTCATCTTGGTAATA
+>seq_378138_x1
+TCACCGGGTGCAAAATCACCTA
+>seq_378139_x1
+ACCGGGTGTACATCAGCCAA
+>seq_378140_x1
+TCACCGGGTCGAAACTAGCAGTG
+>seq_378141_x1
+TCACCGGNTGAACACTTGCAG
+>seq_378142_x1
+AGCACCGGGTGTACATCAGCTAA
+>seq_378143_x1
+CGAAAAGGGGAGCAACGAAAAGG
+>seq_378144_x1
+ATCAACGGGTGAAAATTCGCATG
+>seq_378145_x1
+ACCGGGTGAAAATTCGCA
+>seq_378146_x1
+ACCGGGTGGAGACTAGCAG
+>seq_378147_x1
+GGCTTTGAAGAGTACTGTAATTT
+>seq_378148_x1
+TCACCGGGTGTACGTCAGCTA
+>seq_378149_x1
+TAACCGGGTGTACATCAGCTA
+>seq_378150_x1
+ACCGGGTGGAACCTAGCAGT
+>seq_378151_x1
+GGTGGTTTTTCTCTTCAGTGA
+>seq_378152_x1
+ACCGGGTGAACATTTGCAGT
+>seq_378153_x1
+AGCAGAACGAAAAGGGGGTCTG
+>seq_378154_x1
+TGTGGGTGTCCGTTGCGGTGC
+>seq_378155_x1
+TCACCGGGTGCAAACTAGC
+>seq_378156_x1
+ACCGGGTGAACGCTTGCAGT
+>seq_378157_x1
+TCACCGGGAGAAAAACTGGAGTTG
+>seq_378158_x1
+CGAAAAGGGGAGCAACGAAAA
+>seq_378159_x1
+ACTGGGTGAAAATTCGCATG
+>seq_378160_x1
+ACCGGGTGGAAACTGGCAGT
+>seq_378161_x1
+CACGGGGTGAACACTTGCAGT
+>seq_378162_x1
+TCACCGGGGGAAAAACTGGAGT
+>seq_378163_x1
+ACCTGGTGGAAACTAGCAGT
+>seq_378164_x1
+CACCGGGTGAACAATTGCAGT
+>seq_378165_x1
+ATCACCGGGTGANCACTTGCAGT
+>seq_378166_x1
+TCACCGGGTGTACATCAGCCA
+>seq_378167_x1
+TCACCGGGTGGAAACTAGCAGTCGCTC
+>seq_378168_x1
+TCATCGGGTGGAAACTAG
+>seq_378169_x1
+ATCACCCGGTGTACATCAGCTAA
+>seq_378170_x1
+CGCCAATTTTCGCTTCAGCGCTA
+>seq_378171_x1
+TCACCGGGAGAATAACTGGAG
+>seq_378172_x1
+TCACCGGNTGTAAATCAGCTTG
+>seq_378173_x1
+GTGGATGTATGCCATGATGATAAGA
+>seq_378174_x1
+TCACCGGGAGAAAAACTGGGGT
+>seq_378175_x1
+TCACCGGGTGGAAACTAGCAGTGGTTC
+>seq_378176_x1
+CGAAAAGGGGATCTGCAAAAATG
+>seq_378177_x1
+ATCACCGGGTGAACACTGGCAGT
+>seq_378178_x1
+CGGGTGGAAACTAGAAGT
+>seq_378179_x1
+ACCGGGTGTAAATCAGCTNG
+>seq_378180_x1
+CACCGGGTGGAAACTAGCGGT
+>seq_378181_x1
+ACACCGGGTGTAAATCAGCTTG
+>seq_378182_x1
+GGTATCACCGGGTGAACACTTGCAGT
+>seq_378183_x1
+TCACCGGGTGTANATCAGCT
+>seq_378184_x1
+ACCGGGTGAACACTTGCTGT
+>seq_378185_x1
+TGTGGGTGTCCGTTGCTGTG
+>seq_378186_x1
+TCANCGGGTGTAAATCAGCTTG
+>seq_378187_x1
+GGGGATCTGCAAAAAGGG
+>seq_378188_x1
+ACCGGGCGAACACTTGCA
+>seq_378189_x1
+CACCGGGTGGGAACTAGCAG
+>seq_378190_x1
+TCACCGGGTCGAAACTAGCA
+>seq_378191_x1
+AGCGGGTGGAAACTAGCAGT
+>seq_378192_x1
+TCACCGGGCGAAAATTCGCA
+>seq_378193_x1
+TCACCGGGTGTACAGCAGCT
+>seq_378194_x1
+TCACCGGGTGGAAACTAGCAGTGGCT
+>seq_378195_x1
+CACCGGGTGAACACTTGCAGTGT
+>seq_378196_x1
+ATCACCGGGAGAACAACTGGAGT
+>seq_378197_x1
+CTATCACCGGGCGAAAATTCGCA
+>seq_378198_x1
+TCACCGGGTGTACATCAGGTA
+>seq_378199_x1
+CCACCGGGTGGAAACTAGCAGTGG
+>seq_378200_x1
+TGTGGGTGTCCGTTGCGGTGCGA
+>seq_378201_x1
+ATCGGGTGAACACTTGCAGT
+>seq_378202_x1
+AGCTGATTTCTTCTTGGTAATA
+>seq_378203_x1
+GAAAAGCGGAGCAGAACGAAAA
+>seq_378204_x1
+GGGGAGCAGAACGAAAAGGGG
+>seq_378205_x1
+TCACCGGGTGAACACTTGTA
+>seq_378206_x1
+ACCGGGTGTACAGCAGCTAA
+>seq_378207_x1
+TCACCGGGTGGAAANTAGCAG
+>seq_378208_x1
+TCACCGGGAGAAAAACAGGAG
+>seq_378209_x1
+ACCGGGAGAAAAACTGGAGA
+>seq_378210_x1
+TATCACCGGGTGAACACTTGCA
+>seq_378211_x1
+TCACCGGGTGGNAACTAGCAGT
+>seq_378212_x1
+TCACCGGGTGGAAACTAGCAATG
+>seq_378213_x1
+ACCGGGTGGAAACTAACAG
+>seq_378214_x1
+CACCGGGTGACCACTTGCAGT
+>seq_378215_x1
+TCACCGGGAGAAAAACTGNAGT
+>seq_378216_x1
+CGAAAAGGAGATCTGGCAC
+>seq_378217_x1
+TCACCGGGGGTACATCAGCT
+>seq_378218_x1
+TCACCGGGTGGAAACTAGCAGCG
+>seq_378219_x1
+ACCGGGTGTAAATCAGCTTGTC
+>seq_378220_x1
+ACCGGGTGAACACATGCA
+>seq_378221_x1
+TCACCGGGTGTACCTCAGC
+>seq_378222_x1
+TCACCGGGCGGAAACTAGCAGTG
+>seq_378223_x1
+TCACCGGGTATACATCAGCTA
+>seq_378224_x1
+ACAGGGTGTACATCAGCTAA
+>seq_378225_x1
+TCANCGGGTGTACATCAGCTA
+>seq_378226_x1
+TCACCCGGTGGAAACTAG
+>seq_378227_x1
+NCACCGGGTGTACATCAGCTA
+>seq_378228_x1
+AGCTGATTTCGTCTTGGTAATAC
+>seq_378229_x1
+TCTCACCGGGTGAAAATTCGCATG
+>seq_378230_x1
+ATCACCGGGTGAACACTTGCGGT
+>seq_378231_x1
+TCACCGGGTGTACATCAGGT
+>seq_378232_x1
+TGTGGGTCTCCGTTGCGGTGCTA
+>seq_378233_x1
+TCCGGGTGAACACTTGCAGT
+>seq_378234_x1
+TCACCGGGTTTAAATCAGCTTG
+>seq_378235_x1
+TCACCAGGTGTACATCAGCTA
+>seq_378236_x1
+CTTAGTCAATTCCTCAAC
+>seq_378237_x1
+ACCGGGTGCACACTTGCAGT
+>seq_378238_x1
+TCACCGGGTGAACACTCGCA
+>seq_378239_x1
+GAAAAGGGGAGCAGAACGAAAAT
+>seq_378240_x1
+TCACCGGGTGTACATGAGCTA
+>seq_378241_x1
+TCGGGTGAACACTTGCAG
+>seq_378242_x1
+TCACCGGGATAAAAACTGGAGT
+>seq_378243_x1
+TCACCGGGTGAAAGATCACCTA
+>seq_378244_x1
+ACCGCGTGTACATCAGCTAA
+>seq_378245_x1
+AAGAGAATAGAACCGACGATAT
+>seq_378246_x1
+TCACCGGGTGAACACTTGCAGTGTT
+>seq_378247_x1
+ACCGGGTGGAAACTAGCAAT
+>seq_378248_x1
+TAACCGGGTGTAAATCAGCTTG
+>seq_378249_x1
+TCACCGGGTGAAAAATCATCTA
+>seq_378250_x1
+CACCGGGTGAACACTTGCAGTTG
+>seq_378251_x1
+ACCGGGTGGAAACTAGTAGT
+>seq_378252_x1
+TCACCGGGTGCAAACTAGCAGTG
+>seq_378253_x1
+TCACCGGGAGAAAAAGTGGAGT
+>seq_378254_x1
+GCCACTTTTCGCTTCAGTGCTA
+>seq_378255_x1
+ACCGGATGAAAATTCGCATG
+>seq_378256_x1
+TCACCGGGTGTAAATCAACT
+>seq_378257_x1
+GCCAATTTTCGCTTCAATGCTA
+>seq_378258_x1
+CAGGGTGTACATCAGCTAA
+>seq_378259_x1
+TCACCGGGAGTACATCAGCTAAG
+>seq_378260_x1
+TCACCGGGTGTAAATTAGCTT
+>seq_378261_x1
+TCACCGGGTGAACACTTGCAGTGGT
+>seq_378262_x1
+TCACCGGGTGTATATCAGCTTG
+>seq_378263_x1
+CACCGGGTGAAGACTTGCAGT
+>seq_378264_x1
+ACCGAGTGAAAATTCGCATG
+>seq_378265_x1
+ATCACCGGGTGAACCCTTGCAGT
+>seq_378266_x1
+GGTGGTCTTTCTCTGCAGTGATA
+>seq_378267_x1
+ACCGGGTGTACATCAGCTAC
+>seq_378268_x1
+TCACCGGGACAAAAACTGGAGT
+>seq_378269_x1
+TCACCGGGTGAAGATTCGCAT
+>seq_378270_x1
+ACACCGGGTGAACACTTGCA
+>seq_378271_x1
+TAACCGGGTGAAAATTCGCAT
+>seq_378272_x1
+ACCGAGTGGAAACTAGCAG
+>seq_378273_x1
+TGTGGGTGTCCGTTGCGGTG
+>seq_378274_x1
+TCACCTGGTGTACATCAGCT
+>seq_378275_x1
+AGCCGATTTCGTCTTGGTAATA
+>seq_378276_x1
+TCACCGGGTGAACACTTGCAGTTG
+>seq_378277_x1
+TCACCGGGAGAAAAATTGGAG
+>seq_378278_x1
+ATCACCGGGTGTACATCACCTA
+>seq_378279_x1
+TCAGCGGGTGTACATCAGCTA
+>seq_378280_x1
+ATCACCGGGTAAAAAATCACCT
+>seq_378281_x1
+GAAAAGTGGAGCAGAACGAAA
+>seq_378282_x1
+ACCGGGAGGAAAACTGGAGT
+>seq_378283_x1
+GGGGGTTTTTCTCTGCAGTGATA
+>seq_378284_x1
+TCACCGGGTGAACAGTTGC
+>seq_378285_x1
+AACGAAAAGGGGATCTGGCACT
+>seq_378286_x1
+TGTGGGGGTCCGTTGCGGT
+>seq_378287_x1
+TCACCGGGTGGACATCAGC
+>seq_378288_x1
+ATCACCGGGGGAACACTTGCAG
+>seq_378289_x1
+ACCGGGTGAACACCTGCAG
+>seq_378290_x1
+AGCTGATTTCGTCTTGGTAGTA
+>seq_378291_x1
+TCACCGGGTGTACATCAGCTAAGG
+>seq_378292_x1
+ACCGGGCGTAAATCAGCTTG
+>seq_378293_x1
+GTTTTGATCGTGAGGCCCCTTC
+>seq_378294_x1
+ACCGGGTGGGAACTAGCA
+>seq_378295_x1
+TCACCGTGTGAACACTTG
+>seq_378296_x1
+TCACCGGTTGTACATCAG
+>seq_378297_x1
+TCACCGGGAGTAAATCAGCTT
+>seq_378298_x1
+ACCGGGTGAACACTTGCCG
+>seq_378299_x1
+TCACCGGGTGAACGCTTGCA
+>seq_378300_x1
+CCCCGGGTGGAAACTAGCAGT
+>seq_378301_x1
+TCACCGGGCGTAAATCAGCTT
+>seq_378302_x1
+CGACAATTTTCGCTTCAGTGCTA
+>seq_378303_x1
+CACCGGGTGAACACTTGCAGTGC
+>seq_378304_x1
+ACGGTATCCGGTCTCGACA
+>seq_378305_x1
+TCAACGGGAGAAAAACTGGAG
+>seq_378306_x1
+ACGGGGTGTACATCAGCTAA
+>seq_378307_x1
+ACCGGCTGAACACTTGCAGT
+>seq_378308_x1
+TCATCGGGAGAAAAACTGGAGT
+>seq_378309_x1
+TCACCGGGTGAACACTTACAG
+>seq_378310_x1
+TCACCGGGTGTACATCAGCTG
+>seq_378311_x1
+CCGGGTGTACATCAGCTA
+>seq_378312_x1
+AGTGTGGGTGTCCGTTGCGGTGCTA
+>seq_378313_x1
+AATCACCGGGTGGAAACTAG
+>seq_378314_x1
+ACCGGGTGGAAACAAGCAGT
+>seq_378315_x1
+TGTGGGTGTCCGTTGCGGCGCTA
+>seq_378316_x1
+CACCGGGTGTACATCACCTAA
+>seq_378317_x1
+TAACCGGGTGAACACTTG
+>seq_378318_x1
+ACCGGGAGAAAAACTGAAGT
+>seq_378319_x1
+TCACCGGGTGGAAACTAGNAGTG
+>seq_378320_x1
+ATCACCGGGTGAAAAATCACAT
+>seq_378321_x1
+TCACCCGGTGAACACTTGCA
+>seq_378322_x1
+TGTGGGTGTCCGTTGCGGTGATA
+>seq_378323_x1
+ATCACCGGGTGGAAACTAGAAGT
+>seq_378324_x1
+TCACCGGGTGTACACCAGCT
+>seq_378325_x1
+ACCGGGTGGGAACTAGCAG
+>seq_378326_x1
+TCACCGGGTGAAAACTAGC
+>seq_378327_x1
+TCACCGGGTGAACACTTGAA
+>seq_378328_x1
+TCAGCGGGTGTAAATCAGC
+>seq_378329_x1
+CCGGGTGGAAACTAGCAGTGGCT
+>seq_378330_x1
+AGTGGTTGTATGCCATGATGATA
+>seq_378331_x1
+NCACCGGGTGGAAACTAGCAG
+>seq_378332_x1
+TCACCGGGTGTAAATCATC
diff -r 000000000000 -r eaac585f172a test-data/reads_collapsed_vs_genome.arf
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/reads_collapsed_vs_genome.arf	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,481 @@
+seq_0_x149538	22	1	22	tcaccgggtggaaactagcagt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_149538_x90904	22	1	22	tcaccgggtgaacacttgcagt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_240442_x25577	22	1	22	tcaccgggtgtacatcagctaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_266019_x11571	22	1	22	tcaccgggtgaaaattcgcatg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_277590_x9943	21	1	21	tcaccgggtggaaactagcag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_287533_x5429	22	1	22	tcaccgggtggaaactagcagt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_292962_x4000	26	1	26	aatgacactggttatcttttccatcg	chrIII:2172325-2172669	26	123	148	aatgacactggttatcttttccatcg	+	0	mmmmmmmmmmmmmmmmmmmmmmmmmm
+seq_296962_x3796	21	1	21	tcaccgggtgaacacttgcag	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_300758_x2851	22	1	22	tcaccgggtgaacacttgcagt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_309210_x2159	22	1	22	tcaccgggtggaaactagcagt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_311369_x2128	22	1	22	tcaccgggtgtaaatcagcttg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_313497_x2021	20	1	20	tcaccgggtggaaactagca	chrII:11534525-11540624	20	3060	3079	tcaccgggtggaaactagca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_320610_x1349	22	1	22	tcaccgggagaaaaactggagt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_325900_x1251	22	1	22	tcaccgggtgaacacttgcagt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_327151_x1237	20	1	20	tcaccgggtgaacacttgca	chrII:11534525-11540624	20	3285	3304	tcaccgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_328388_x1017	21	1	21	tcaccgggtgtacatcagcta	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_329405_x990	20	1	20	accgggtggaaactagcagt	chrII:11534525-11540624	20	3062	3081	accgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_333757_x746	20	1	20	accgggtgaacacttgcagt	chrII:11534525-11540624	20	3287	3306	accgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_334503_x690	21	1	21	tcaccgggtggaaactagcag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_336553_x669	21	1	21	tcaccgggtggaaactagcag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_337222_x632	22	1	22	agctgatttcgtcttggtaata	chrII:11534525-11540624	22	3495	3516	agctgatttcgtcttggtaata	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_339056_x557	21	1	21	tcaccgggtggaaactagcag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_339613_x541	22	1	22	tcaccgggtgtacatcagctaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_342045_x391	22	1	22	tcaccgggtgaacacttgccgt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_343569_x355	22	1	22	tcaccgggtgtacatcagctaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_344961_x338	21	1	21	tcaccgggtgtacatcagcta	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_345299_x327	22	1	22	tcaccgggtgaacacttgctgt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_345948_x316	21	1	21	tcaccgggtgaaaattcgcat	chrII:11534525-11540624	21	3165	3185	tcaccgggtgaaaattcgcat	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_346264_x309	22	1	22	tcaccgggtggaaactagccgt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_346877_x304	22	1	22	tcaccgggtggaaactagctgt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_348053_x285	21	1	21	caccgggtgaacacttgcagt	chrII:11534525-11540624	21	3286	3306	caccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_348338_x283	22	1	22	tcaccgggtggaaactagtagt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_349174_x270	21	1	21	tcaccgggtgaacacttgcag	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_350773_x263	22	1	22	tcaccgggtggaaactagaagt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_351534_x242	21	1	21	tcaccgggtgaacacttgcag	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_351776_x240	20	1	20	accgggtgtacatcagctaa	chrII:11534525-11540624	20	3633	3652	accgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_352016_x236	22	1	22	tcaccgggtggaaactagnagt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_352252_x230	22	1	22	tcaccgggagaaaaactggagt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_352482_x229	21	1	21	tcaccgggtgaaaattcgcat	chrII:11534525-11540624	21	3165	3185	tcaccgggtgaaaattcgcat	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_353384_x221	21	1	21	caccgggtgaacacttgcagt	chrII:11534525-11540624	21	3286	3306	caccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_353824_x217	22	1	22	tcaccgggtggaaactagcatt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_354255_x214	21	1	21	tcaccgggtgtaaatcagctt	chrII:11534525-11540624	21	3535	3555	tcaccgggtgtaaatcagctt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_357284_x187	21	1	21	tcaccgggtgaacacttgcag	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_357837_x183	20	1	20	tcaccgggtgtacatcagct	chrII:11534525-11540624	20	3631	3650	tcaccgggtgtacatcagct	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_358198_x178	22	1	22	tcaccgggtggaaactagcact	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_358376_x178	23	1	23	atcaccgggtgaacacttgcagt	chrII:11534525-11540624	23	3284	3306	atcaccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_360693_x155	22	1	22	tcaccgggtgaacacttgnagt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_361587_x144	21	1	21	tcaccgggagaaaaactggag	chrII:11534525-11540624	21	3382	3402	tcaccgggagaaaaactggag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_361874_x141	21	1	21	caccgggtgaacacttgcagt	chrII:11534525-11540624	21	3286	3306	caccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_362156_x140	22	1	22	tcaccgggtgaacacttgcact	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_362296_x138	22	1	22	tcaccgggtgaacacttgcatt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_362569_x133	22	1	22	tcaccgggtgaacacttgtagt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_362702_x132	20	1	20	tcaccgggtggaaactagca	chrII:11534525-11540624	20	3060	3079	tcaccgggtggaaactagca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_362834_x132	22	1	22	tcaccgggtggaaactagcaat	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_363229_x131	19	1	19	tcaccgggtggaaactagc	chrII:11534525-11540624	19	3060	3078	tcaccgggtggaaactagc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_365235_x104	20	1	20	accgggtgaaaattcgcatg	chrII:11534525-11540624	20	3167	3186	accgggtgaaaattcgcatg	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_365339_x104	22	1	22	tcaccgggtgaacacttgaagt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_365546_x102	21	1	21	caccgggtggaaactagcagt	chrII:11534525-11540624	21	3061	3081	caccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_366797_x89	21	1	21	tcaccgggtgtacatcagcta	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_366886_x88	18	1	18	tcaccgggtggaaactag	chrII:11534525-11540624	18	3060	3077	tcaccgggtggaaactag	+	0	mmmmmmmmmmmmmmmmmm
+seq_366974_x88	21	1	21	tcaccgggtgtaaatcagctt	chrII:11534525-11540624	21	3535	3555	tcaccgggtgtaaatcagctt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_367573_x83	22	1	22	tcaccgggtgtacatcagctca	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_367890_x78	20	1	20	tcaccgggtgtaaatcagct	chrII:11534525-11540624	20	3535	3554	tcaccgggtgtaaatcagct	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_367968_x76	23	1	23	tgtgggtgtccgttgcggtgcta	chrII:11534525-11540624	23	3246	3268	tgtgggtgtccgttgcggtgcta	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_368044_x74	21	1	21	caccgggtgtacatcagctaa	chrII:11534525-11540624	21	3632	3652	caccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_368118_x72	22	1	22	tcaccgggtgtacatcagttaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_368331_x70	22	1	22	tcaccgggtgtacatcagataa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_368539_x67	22	1	22	tcaccgggtgaacacttgcggt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_368606_x67	19	1	19	accgggtggaaactagcag	chrII:11534525-11540624	19	3062	3080	accgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_368936_x64	19	1	19	tcaccgggtgtacatcagc	chrII:11534525-11540624	19	3631	3649	tcaccgggtgtacatcagc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_369000_x64	22	1	22	tcaccgggtggaaactagcggt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_369064_x62	22	1	22	tcaccgggtgaacacttgcaat	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_369608_x57	23	1	23	tcaccgggtggaaactagcagtg	chrII:11534525-11540624	23	3060	3082	tcaccgggtggaaactagcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_369929_x51	22	1	22	tcaccgggtggaaactagcagt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_370030_x50	21	1	21	agctgatttcgtcttggtaat	chrII:11534525-11540624	21	3495	3515	agctgatttcgtcttggtaat	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_370222_x46	22	1	22	tcaccgggtgtacatcagntaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_370360_x45	22	1	22	tcaccgggtgtacatcagctta	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_370405_x44	19	1	19	accgggtgaacacttgcag	chrII:11534525-11540624	19	3287	3305	accgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_370580_x42	23	1	23	ggtggtttttctctgcagtgata	chrII:11534525-11540624	23	3716	3738	ggtggtttttctctgcagtgata	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_370988_x40	22	1	22	tcaccgggtggaaactaggagt	chrII:11534525-11540624	22	3060	3081	tcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_371145_x39	22	1	22	tcaccgggtgtacatcagctga	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_371260_x37	22	1	22	tcaccgggtgaacacttggagt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_371297_x37	23	1	23	cgccaattttcgcttcagtgcta	chrII:11534525-11540624	23	3124	3146	cgccaattttcgcttcagtgcta	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_371408_x36	22	1	22	tcaccgggtgaaaattcgcatg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_371444_x36	22	1	22	tcaccgggtgaaaattcgcagg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_371516_x35	23	1	23	atcaccgggtggaaactagcagt	chrII:11534525-11540624	23	3059	3081	atcaccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_371551_x34	21	1	21	caccgggtggaaactagcagt	chrII:11534525-11540624	21	3061	3081	caccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_371653_x34	21	1	21	tcaccgggtgaaaattcgcat	chrII:11534525-11540624	21	3165	3185	tcaccgggtgaaaattcgcat	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_371687_x34	20	1	20	tcaccgggtggaaactagca	chrII:11534525-11540624	20	3060	3079	tcaccgggtggaaactagca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_371721_x34	23	1	23	atcaccgggtgtacatcagctaa	chrII:11534525-11540624	23	3630	3652	atcaccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_371821_x33	21	1	21	tcaccgggtgtaaatcagctt	chrII:11534525-11540624	21	3535	3555	tcaccgggtgtaaatcagctt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_371854_x33	21	1	21	tcaccgggagaaaaactggag	chrII:11534525-11540624	21	3382	3402	tcaccgggagaaaaactggag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_371887_x33	20	1	20	accgggtgtaaatcagcttg	chrII:11534525-11540624	20	3537	3556	accgggtgtaaatcagcttg	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_372017_x32	20	1	20	accgggtggaaactagcagt	chrII:11534525-11540624	20	3062	3081	accgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_372080_x31	22	1	22	tcaccgggtgtaaatcagcttg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_372294_x30	21	1	21	tcaccgggtggaaactagtag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_372324_x29	23	1	23	agtggatgtatgccatgatgata	chrII:11534525-11540624	23	3591	3613	agtggatgtatgccatgatgata	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_372411_x29	20	1	20	accgggtgaacacttgcagt	chrII:11534525-11540624	20	3287	3306	accgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_372440_x28	22	1	22	tcaccgggtgtacatcagctaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_372550_x27	18	1	18	tcaccgggtgtacatcag	chrII:11534525-11540624	18	3631	3648	tcaccgggtgtacatcag	+	0	mmmmmmmmmmmmmmmmmm
+seq_372631_x27	22	1	22	tcaccgggtgaaaaatcaccta	chrII:11534525-11540624	22	3760	3781	tcaccgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_372815_x25	20	1	20	tcaccgggtgaaaattcgca	chrII:11534525-11540624	20	3165	3184	tcaccgggtgaaaattcgca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_372964_x24	22	1	22	tcaccgggtgtacatcagcgaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_373012_x24	19	1	19	tcaccgggtgaacacttgc	chrII:11534525-11540624	19	3285	3303	tcaccgggtgaacacttgc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_373036_x24	20	1	20	accgggtggaaactagcagt	chrII:11534525-11540624	20	3062	3081	accgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_373131_x23	20	1	20	caccgggtgaacacttgcag	chrII:11534525-11540624	20	3286	3305	caccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_373268_x22	21	1	21	tcaccgggtgaaaattcgcat	chrII:11534525-11540624	21	3165	3185	tcaccgggtgaaaattcgcat	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_373312_x22	20	1	20	tcaccgggtgtaaatcagct	chrII:11534525-11540624	20	3535	3554	tcaccgggtgtaaatcagct	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_373334_x22	22	1	22	tcaccgggagaaaaactgcagt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_373378_x22	22	1	22	tcaccgggtgaacacttgcagt	chrII:11534525-11540624	22	3285	3306	tcaccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_373400_x22	22	1	22	tcaccgggtgaaaattcgcctg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_373588_x20	22	1	22	tcaccgggtgaaaattcgcttg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_373608_x20	18	1	18	tcaccgggtgaacacttg	chrII:11534525-11540624	18	3285	3302	tcaccgggtgaacacttg	+	0	mmmmmmmmmmmmmmmmmm
+seq_373668_x20	22	1	22	atcaccgggtgaacacttgcag	chrII:11534525-11540624	22	3284	3305	atcaccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_373708_x20	23	1	23	tcaccgggagaaaaactggagta	chrII:11534525-11540624	23	3382	3404	tcaccgggagaaaaactggagta	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_373747_x19	21	1	21	caccgggtgtacatcagctaa	chrII:11534525-11540624	21	3632	3652	caccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_373842_x19	22	1	22	tcaccgggtgaaaattcgaatg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_373861_x19	23	1	23	tcaccgggtgaacacttgcagtg	chrII:11534525-11540624	23	3285	3307	tcaccgggtgaacacttgcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_373956_x19	22	1	22	agctgatttcgtcttggtaata	chrII:11534525-11540624	22	3495	3516	agctgatttcgtcttggtaata	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_374029_x18	23	1	23	tcaccgggtgtacatcagctaag	chrII:11534525-11540624	23	3631	3653	tcaccgggtgtacatcagctaag	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_374047_x18	21	1	21	tcaccgggtggaaactagaag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_374065_x18	21	1	21	caccgggtgtacatcagctaa	chrII:11534525-11540624	21	3632	3652	caccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_374083_x18	22	1	22	tcaccgggagaaaaactggtgt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_374119_x18	22	1	22	tcaccgggtgaaaattcgtatg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_374190_x17	21	1	21	tcaccgggagaaaaactggag	chrII:11534525-11540624	21	3382	3402	tcaccgggagaaaaactggag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_374224_x17	21	1	21	tcaccgggtggaaactagctg	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_374292_x17	20	1	20	agctgatttcgtcttggtaa	chrII:11534525-11540624	20	3495	3514	agctgatttcgtcttggtaa	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_374375_x16	20	1	20	tcaccgggtgaacacttgca	chrII:11534525-11540624	20	3285	3304	tcaccgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_374439_x16	22	1	22	caccgggtgaacacttgcagtg	chrII:11534525-11540624	22	3286	3307	caccgggtgaacacttgcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_374519_x16	20	1	20	accgggtgaacacttgcagt	chrII:11534525-11540624	20	3287	3306	accgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_374582_x15	21	1	21	tcaccgggtggaaactagnag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_374597_x15	21	1	21	tcaccgggtgtaaatcagctt	chrII:11534525-11540624	21	3535	3555	tcaccgggtgtaaatcagctt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_374757_x14	22	1	22	tgtgggtgtccgttgcggtgct	chrII:11534525-11540624	22	3246	3267	tgtgggtgtccgttgcggtgct	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_374799_x14	22	1	22	tcaccgggtgaaaattcgnatg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_374813_x14	20	1	20	tcaccgggtggaaactagca	chrII:11534525-11540624	20	3060	3079	tcaccgggtggaaactagca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_374841_x14	22	1	22	tcaccgggtgtacatcagcaaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_374908_x13	19	1	19	accgggtggaaactagcag	chrII:11534525-11540624	19	3062	3080	accgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_374947_x13	23	1	23	tcaccgggagaaaaactggagta	chrII:11534525-11540624	23	3382	3404	tcaccgggagaaaaactggagta	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_374960_x13	20	1	20	caccgggtggaaactagcag	chrII:11534525-11540624	20	3061	3080	caccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_375025_x13	19	1	19	tcaccgggtggaaactagc	chrII:11534525-11540624	19	3060	3078	tcaccgggtggaaactagc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_375076_x12	23	1	23	atcaccgggtgaaaattcgcatg	chrII:11534525-11540624	23	3164	3186	atcaccgggtgaaaattcgcatg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_375088_x12	23	1	23	atcaccgggagaaaaactggagt	chrII:11534525-11540624	23	3381	3403	atcaccgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_375112_x12	21	1	21	tcaccgggagaaaaactggag	chrII:11534525-11540624	21	3382	3402	tcaccgggagaaaaactggag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_375172_x12	21	1	21	tcaccgggtggaaactagccg	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_375184_x12	21	1	21	tcaccgggtgaacacttgctg	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_375196_x12	22	1	22	tcaccgggtgtaaatcagcttg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_375231_x11	23	1	23	tgctggtttcttccacagtggta	chrII:11534525-11540624	23	3021	3043	tgctggtttcttccacagtggta	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_375253_x11	18	1	18	accgggtggaaactagca	chrII:11534525-11540624	18	3062	3079	accgggtggaaactagca	+	0	mmmmmmmmmmmmmmmmmm
+seq_375286_x11	19	1	19	tcaccgggtgtaaatcagc	chrII:11534525-11540624	19	3535	3553	tcaccgggtgtaaatcagc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_375395_x10	20	1	20	accgggagaaaaactggagt	chrII:11534525-11540624	20	3384	3403	accgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_375415_x10	21	1	21	tcaccgggtgaacacttgaag	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_375435_x10	21	1	21	caccgggtggaaactagcagt	chrII:11534525-11540624	21	3061	3081	caccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_375515_x10	22	1	22	tcaccgggtgtacatcagccaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_375585_x10	22	1	22	tcaccgggtgtacatcaggtaa	chrII:11534525-11540624	22	3631	3652	tcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_375595_x10	22	1	22	ctatcaccgggtgtacatcagc	chrII:11534525-11540624	22	3628	3649	ctatcaccgggtgtacatcagc	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_375615_x10	23	1	23	atcaccgggtgaaaaatcaccta	chrII:11534525-11540624	23	3759	3781	atcaccgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_375635_x10	22	1	22	tcaccgggtgaaaattcgcatg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_375675_x10	19	1	19	tcaccgggtggaaactagc	chrII:11534525-11540624	19	3060	3078	tcaccgggtggaaactagc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_375685_x9	19	1	19	accgggtgaacacttgcag	chrII:11534525-11540624	19	3287	3305	accgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_375703_x9	21	1	21	tcaccgggtgtacatcagcta	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_375730_x9	19	1	19	accgggtggaaactagcag	chrII:11534525-11540624	19	3062	3080	accgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_375793_x9	21	1	21	tcaccgggtgaacacttgccg	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_375829_x9	19	1	19	accgggtggaaactagcag	chrII:11534525-11540624	19	3062	3080	accgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_375838_x9	21	1	21	gatacttctaacaactcgcta	chrII:11534525-11540624	21	3739	3759	gatacttctaacaactcgcta	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_375874_x9	22	1	22	tcaccgggtgaaaattcgcacg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_375958_x8	21	1	21	tcaccgggtgaacacttgtag	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_375982_x8	19	1	19	accgggtgaacacttgcag	chrII:11534525-11540624	19	3287	3305	accgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_375998_x8	22	1	22	tcaccgggtgaaaattcgcgtg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_376006_x8	22	1	22	atcaccgggtgaaaaatcacct	chrII:11534525-11540624	22	3759	3780	atcaccgggtgaaaaatcacct	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_376014_x8	19	1	19	ccgggtggaaactagcagt	chrII:11534525-11540624	19	3063	3081	ccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmm
+seq_376030_x8	19	1	19	acgcatccaaaagtctcta	chrII:11534525-11540624	19	3363	3381	acgcatccaaaagtctcta	+	0	mmmmmmmmmmmmmmmmmmm
+seq_376070_x8	20	1	20	tcaccgggtgaacacttgca	chrII:11534525-11540624	20	3285	3304	tcaccgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_376094_x8	18	1	18	accgggtgaacacttgca	chrII:11534525-11540624	18	3287	3304	accgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmm
+seq_376102_x8	19	1	19	agctgatttcgtcttggta	chrII:11534525-11540624	19	3495	3513	agctgatttcgtcttggta	+	0	mmmmmmmmmmmmmmmmmmm
+seq_376169_x7	20	1	20	tcaccgggtggaaactagna	chrII:11534525-11540624	20	3060	3079	tcaccgggtggaaactagca	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_376176_x7	21	1	21	tcaccgggtgaacacttgnag	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_376232_x7	20	1	20	caccgggtgtacatcagcta	chrII:11534525-11540624	20	3632	3651	caccgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_376281_x6	22	1	22	tcaccgggtgaaaattcgcaag	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_376311_x6	20	1	20	tcaccgggtgtacatcagct	chrII:11534525-11540624	20	3631	3650	tcaccgggtgtacatcagct	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_376317_x6	23	1	23	agctgatttcgtcttggtaataa	chrII:11534525-11540624	23	3495	3517	agctgatttcgtcttggtaataa	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_376329_x6	23	1	23	agtggatgtatgccatgatgata	chrII:11534525-11540624	23	3591	3613	agtggatgtatgccatgatgata	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_376395_x6	20	1	20	accgggtgaaaaatcaccta	chrII:11534525-11540624	20	3762	3781	accgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_376431_x6	22	1	22	atcaccgggtgtacatcagcta	chrII:11534525-11540624	22	3630	3651	atcaccgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_376437_x6	22	1	22	tcaccgggtgtaaatcagctgg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_376455_x6	23	1	23	cagctgatttcgtcttggtaata	chrII:11534525-11540624	23	3494	3516	cagctgatttcgtcttggtaata	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_376527_x6	21	1	21	tcccaactattattctcggat	chrII:11534525-11540624	21	2987	3007	tcccaactattattctcggat	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_376558_x5	20	1	20	tcaccgggtgtacatcagct	chrII:11534525-11540624	20	3631	3650	tcaccgggtgtacatcagct	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_376598_x5	20	1	20	accgggtgaacacttgcact	chrII:11534525-11540624	20	3287	3306	accgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_376613_x5	22	1	22	tgtgggtgtccgttgcggtgct	chrII:11534525-11540624	22	3246	3267	tgtgggtgtccgttgcggtgct	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_376628_x5	22	1	22	tcaccgggtgtaaatcagattg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_376663_x5	19	1	19	tcaccgggtgaacacttgc	chrII:11534525-11540624	19	3285	3303	tcaccgggtgaacacttgc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_376683_x5	23	1	23	tcaccgggtgtaaatcagcttgg	chrII:11534525-11540624	23	3535	3557	tcaccgggtgtaaatcagcttgg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_376688_x5	20	1	20	caccgggtgaacacttgcag	chrII:11534525-11540624	20	3286	3305	caccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_376693_x5	18	1	18	tcaccgggtgtaaatcag	chrII:11534525-11540624	18	3535	3552	tcaccgggtgtaaatcag	+	0	mmmmmmmmmmmmmmmmmm
+seq_376708_x5	20	1	20	accgggtggaaactagcact	chrII:11534525-11540624	20	3062	3081	accgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_376718_x5	22	1	22	tcaccgggagaaaaactggact	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_376723_x4	24	1	24	tcaccgggtggaaactagcagtag	chrII:11534525-11540624	24	3060	3083	tcaccgggtggaaactagcagtgg	+	1	mmmmmmmmmmmmmmmmmmmmmmMm
+seq_376747_x4	20	1	20	tcaccgggagaaaaactgga	chrII:11534525-11540624	20	3382	3401	tcaccgggagaaaaactgga	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_376759_x4	20	1	20	accgggtgtacatcagctaa	chrII:11534525-11540624	20	3633	3652	accgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_376803_x4	19	1	19	tcaccgggtggaaactagc	chrII:11534525-11540624	19	3060	3078	tcaccgggtggaaactagc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_376843_x4	21	1	21	tcaccgggtgtacatcagata	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_376851_x4	21	1	21	tcaccgggtgaaaaatcacct	chrII:11534525-11540624	21	3760	3780	tcaccgggtgaaaaatcacct	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_376855_x4	23	1	23	tcaccgggtgaacacttgcagtg	chrII:11534525-11540624	23	3285	3307	tcaccgggtgaacacttgcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_376859_x4	21	1	21	tcaccgggagaaaaactggtg	chrII:11534525-11540624	21	3382	3402	tcaccgggagaaaaactggag	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_376863_x4	22	1	22	tcaccgggagaaaaactgtagt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_376879_x4	22	1	22	atcaccgggtgaaaaatcacct	chrII:11534525-11540624	22	3759	3780	atcaccgggtgaaaaatcacct	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_376891_x4	22	1	22	tcaccgggtgtaaatcagcgtg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_376903_x4	18	1	18	cgggtggaaactagcagt	chrII:11534525-11540624	18	3064	3081	cgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmm
+seq_376907_x4	21	1	21	agctgatttcgtcttggtaat	chrII:11534525-11540624	21	3495	3515	agctgatttcgtcttggtaat	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_376915_x4	23	1	23	tatcaccgggtgaacacttgcag	chrII:11534525-11540624	23	3283	3305	tatcaccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_376939_x4	23	1	23	tcaccgggtggaaactagcagtg	chrII:11534525-11540624	23	3060	3082	tcaccgggtggaaactagcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_376955_x4	19	1	19	accgggtgtacatcagcta	chrII:11534525-11540624	19	3633	3651	accgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmm
+seq_376991_x4	22	1	22	tcaccgggtgtaaatcagcttg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377013_x3	23	1	23	tcaccgggagaaaaactggagca	chrII:11534525-11540624	23	3382	3404	tcaccgggagaaaaactggagta	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_377019_x3	24	1	24	tcaccgggtggaaactagcagttg	chrII:11534525-11540624	24	3060	3083	tcaccgggtggaaactagcagtgg	+	1	mmmmmmmmmmmmmmmmmmmmmmMm
+seq_377022_x3	20	1	20	caccgggtgaacacttgcag	chrII:11534525-11540624	20	3286	3305	caccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377028_x3	21	1	21	tcaccgggtgtacatcagnta	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_377031_x3	21	1	21	agctgatttcgtcttggtaat	chrII:11534525-11540624	21	3495	3515	agctgatttcgtcttggtaat	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377043_x3	21	1	21	tcaccgggtgtacatcagtta	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_377049_x3	21	1	21	tcaccgggtggaaactagcag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377055_x3	22	1	22	atcaccgggtggaaactagcag	chrII:11534525-11540624	22	3059	3080	atcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377073_x3	21	1	21	caccgggtgaaaattcgcatg	chrII:11534525-11540624	21	3166	3186	caccgggtgaaaattcgcatg	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377076_x3	21	1	21	tcaccgggtggaaactagcgg	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_377091_x3	20	1	20	tcaccgggtgtacatcagct	chrII:11534525-11540624	20	3631	3650	tcaccgggtgtacatcagct	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377100_x3	23	1	23	atcaccgggtgtaaatcagcttg	chrII:11534525-11540624	23	3534	3556	atcaccgggtgtaaatcagcttg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377103_x3	19	1	19	accgggtgaaaattcgcat	chrII:11534525-11540624	19	3167	3185	accgggtgaaaattcgcat	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377109_x3	23	1	23	atcaccgggtgaacacttgcatt	chrII:11534525-11540624	23	3284	3306	atcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_377115_x3	23	1	23	gtgtgggtgtccgttgcggtgct	chrII:11534525-11540624	23	3245	3267	gtgtgggtgtccgttgcggtgct	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377133_x3	23	1	23	atcaccgggtgaacacttgcagt	chrII:11534525-11540624	23	3284	3306	atcaccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377136_x3	19	1	19	accgggagaaaaactggag	chrII:11534525-11540624	19	3384	3402	accgggagaaaaactggag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377166_x3	22	1	22	agctgatttcgtcttggtatta	chrII:11534525-11540624	22	3495	3516	agctgatttcgtcttggtaata	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_377178_x3	21	1	21	tcaccgggagaaaaactgcag	chrII:11534525-11540624	21	3382	3402	tcaccgggagaaaaactggag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_377184_x3	19	1	19	accgggtgaacacttgcag	chrII:11534525-11540624	19	3287	3305	accgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377202_x3	21	1	21	caccgggtgaacacttgctgt	chrII:11534525-11540624	21	3286	3306	caccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_377208_x3	22	1	22	tcaccgggagaaaaactgaagt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_377232_x3	18	1	18	cgggtgaacacttgcagt	chrII:11534525-11540624	18	3289	3306	cgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmm
+seq_377244_x3	20	1	20	tcaccgggtgtaaatcagct	chrII:11534525-11540624	20	3535	3554	tcaccgggtgtaaatcagct	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377247_x3	22	1	22	tcaccgggtgaaaaatcaccta	chrII:11534525-11540624	22	3760	3781	tcaccgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377256_x3	23	1	23	tcaccgggtgaacacttgcagtg	chrII:11534525-11540624	23	3285	3307	tcaccgggtgaacacttgcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377271_x3	22	1	22	tcaccgggtgaaaattcggatg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_377286_x3	21	1	21	caccgggtgaacacttgcagt	chrII:11534525-11540624	21	3286	3306	caccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377289_x3	21	1	21	atcaccgggtgaacacttgca	chrII:11534525-11540624	21	3284	3304	atcaccgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377301_x3	19	1	19	ccgggtgaacacttgcagt	chrII:11534525-11540624	19	3288	3306	ccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377316_x3	21	1	21	tcaccgggtgtacatcagcaa	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_377329_x2	22	1	22	tcaccgggtgaaaattcgcatg	chrII:11534525-11540624	22	3165	3186	tcaccgggtgaaaattcgcatg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377331_x2	22	1	22	tcaccgggtgaaaaatcaccta	chrII:11534525-11540624	22	3760	3781	tcaccgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377353_x2	22	1	22	atcaccgggtgaacacttgcag	chrII:11534525-11540624	22	3284	3305	atcaccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377355_x2	21	1	21	tcaccgggtgaacacttggag	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_377371_x2	25	1	25	ggtggtttttctctgcagtgataaa	chrII:11534525-11540624	25	3716	3740	ggtggtttttctctgcagtgataga	+	1	mmmmmmmmmmmmmmmmmmmmmmmMm
+seq_377381_x2	20	1	20	accgggtggaaactagcatt	chrII:11534525-11540624	20	3062	3081	accgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377387_x2	23	1	23	cgccaattttcgcttcagtgcta	chrII:11534525-11540624	23	3124	3146	cgccaattttcgcttcagtgcta	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377391_x2	22	1	22	tcaccgggagaaaaactggcgt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_377399_x2	22	1	22	tcaccgggtgtaaatcagcatg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_377401_x2	25	1	25	tcaccgggtggaaactagcagtggc	chrII:11534525-11540624	25	3060	3084	tcaccgggtggaaactagcagtggc	+	0	mmmmmmmmmmmmmmmmmmmmmmmmm
+seq_377403_x2	21	1	21	caccgggagaaaaactggagt	chrII:11534525-11540624	21	3383	3403	caccgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377411_x2	27	1	27	tcaccgggtgaacacttgcagtggttc	chrII:11534525-11540624	27	3285	3311	tcaccgggtgaacacttgcagtggtcc	+	1	mmmmmmmmmmmmmmmmmmmmmmmmmMm
+seq_377413_x2	22	1	22	cgaaaaggggagcaacgaaaag	chrII:11534525-11540624	22	99	120	cgaaaaggggagcaacgaaaag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377413_x2	22	1	22	cgaaaaggggagcaacgaaaag	chrII:11534525-11540624	22	293	314	cgaaaaggggagcaacgaaaag	-	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377421_x2	25	1	25	tcaccgggtggaaactagcagtgac	chrII:11534525-11540624	25	3060	3084	tcaccgggtggaaactagcagtggc	+	1	mmmmmmmmmmmmmmmmmmmmmmmMm
+seq_377427_x2	23	1	23	tcaccgggtggaaactagcagtg	chrII:11534525-11540624	23	3060	3082	tcaccgggtggaaactagcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377431_x2	23	1	23	atcaccgggtggaaactagcagt	chrII:11534525-11540624	23	3059	3081	atcaccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377439_x2	21	1	21	caccgggtgaaaaatcaccta	chrII:11534525-11540624	21	3761	3781	caccgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377447_x2	26	1	26	tcaccgggtgaacacttgcagtgatc	chrII:11534525-11540624	26	3285	3310	tcaccgggtgaacacttgcagtggtc	+	1	mmmmmmmmmmmmmmmmmmmmmmmMmm
+seq_377451_x2	18	1	18	tcaccgggtggaaactag	chrII:11534525-11540624	18	3060	3077	tcaccgggtggaaactag	+	0	mmmmmmmmmmmmmmmmmm
+seq_377459_x2	23	1	23	ggtggtttttctctgcagtgcta	chrII:11534525-11540624	23	3716	3738	ggtggtttttctctgcagtgata	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_377467_x2	22	1	22	caccgggtgtacatcagctaag	chrII:11534525-11540624	22	3632	3653	caccgggtgtacatcagctaag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377479_x2	22	1	22	atcaccgggtggaaactagcag	chrII:11534525-11540624	22	3059	3080	atcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377489_x2	23	1	23	atcaccgggtgtacatcagctaa	chrII:11534525-11540624	23	3630	3652	atcaccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377521_x2	23	1	23	atcaccgggtgaacacttgaagt	chrII:11534525-11540624	23	3284	3306	atcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmMmmm
+seq_377527_x2	23	1	23	atcaccgggtgaacacttgcagt	chrII:11534525-11540624	23	3284	3306	atcaccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377529_x2	23	1	23	atcaccgggagaaaaactggagt	chrII:11534525-11540624	23	3381	3403	atcaccgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377533_x2	22	1	22	agtggatgtatgccatgatgat	chrII:11534525-11540624	22	3591	3612	agtggatgtatgccatgatgat	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377535_x2	21	1	21	caccgggtgtacatcagctaa	chrII:11534525-11540624	21	3632	3652	caccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377539_x2	18	1	18	tcaccgggtggaaactag	chrII:11534525-11540624	18	3060	3077	tcaccgggtggaaactag	+	0	mmmmmmmmmmmmmmmmmm
+seq_377547_x2	20	1	20	tcaccgggtgaacacttgca	chrII:11534525-11540624	20	3285	3304	tcaccgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377565_x2	19	1	19	tcaccgggtgaacacttgc	chrII:11534525-11540624	19	3285	3303	tcaccgggtgaacacttgc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377575_x2	21	1	21	tcaccgggtggaaactaggag	chrII:11534525-11540624	21	3060	3080	tcaccgggtggaaactagcag	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_377585_x2	18	1	18	accgggtgtacatcagct	chrII:11534525-11540624	18	3633	3650	accgggtgtacatcagct	+	0	mmmmmmmmmmmmmmmmmm
+seq_377587_x2	21	1	21	tcaccgggtgtacatcagcga	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_377595_x2	23	1	23	tcaccgggtgtacatcagctaag	chrII:11534525-11540624	23	3631	3653	tcaccgggtgtacatcagctaag	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377597_x2	21	1	21	caccgggtgtaaatcagcttg	chrII:11534525-11540624	21	3536	3556	caccgggtgtaaatcagcttg	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377599_x2	20	1	20	tcaccgggtggaaactagta	chrII:11534525-11540624	20	3060	3079	tcaccgggtggaaactagca	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377603_x2	20	1	20	tcaccgggagaaaaactgga	chrII:11534525-11540624	20	3382	3401	tcaccgggagaaaaactgga	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377607_x2	20	1	20	accgggtgtacatcagctca	chrII:11534525-11540624	20	3633	3652	accgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377619_x2	25	1	25	tcaccgggtggaaactagcagtagc	chrII:11534525-11540624	25	3060	3084	tcaccgggtggaaactagcagtggc	+	1	mmmmmmmmmmmmmmmmmmmmmmMmm
+seq_377621_x2	19	1	19	accgggtgtaaatcagctt	chrII:11534525-11540624	19	3537	3555	accgggtgtaaatcagctt	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377623_x2	19	1	19	accgggtgtacatcagcta	chrII:11534525-11540624	19	3633	3651	accgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377627_x2	23	1	23	atcaccgggtgtacatcagctaa	chrII:11534525-11540624	23	3630	3652	atcaccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377629_x2	24	1	24	tcaccgggtgaacacttgcagtgg	chrII:11534525-11540624	24	3285	3308	tcaccgggtgaacacttgcagtgg	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_377633_x2	21	1	21	gcctctacaagttgtgatcgt	chrII:11534525-11540624	21	841	861	gcctctacaagttgtgatcgt	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377645_x2	22	1	22	cgccaattttcgcttcagtgct	chrII:11534525-11540624	22	3124	3145	cgccaattttcgcttcagtgct	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377657_x2	22	1	22	ggtggtttttctctgcagtgat	chrII:11534525-11540624	22	3716	3737	ggtggtttttctctgcagtgat	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377659_x2	19	1	19	ccgggtgtacatcagctaa	chrII:11534525-11540624	19	3634	3652	ccgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377665_x2	22	1	22	agctgatttcgtcttggtcata	chrII:11534525-11540624	22	3495	3516	agctgatttcgtcttggtaata	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_377669_x2	19	1	19	accgggtgaaaattcgcat	chrII:11534525-11540624	19	3167	3185	accgggtgaaaattcgcat	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377673_x2	20	1	20	accgggagaaaaactggagt	chrII:11534525-11540624	20	3384	3403	accgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377675_x2	25	1	25	tcaccgggtggaaactagcagtgcc	chrII:11534525-11540624	25	3060	3084	tcaccgggtggaaactagcagtggc	+	1	mmmmmmmmmmmmmmmmmmmmmmmMm
+seq_377683_x2	20	1	20	tcaccgggtggaaactagaa	chrII:11534525-11540624	20	3060	3079	tcaccgggtggaaactagca	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377687_x2	23	1	23	tcaccgggtgaacacttgctgtg	chrII:11534525-11540624	23	3285	3307	tcaccgggtgaacacttgcagtg	+	1	mmmmmmmmmmmmmmmmmmmMmmm
+seq_377695_x2	23	1	23	tcaccgggagaaaaactggtgta	chrII:11534525-11540624	23	3382	3404	tcaccgggagaaaaactggagta	+	1	mmmmmmmmmmmmmmmmmmmMmmm
+seq_377699_x2	23	1	23	ctatcaccgggtgtacatcagct	chrII:11534525-11540624	23	3628	3650	ctatcaccgggtgtacatcagct	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377705_x2	19	1	19	accgggtgtaaatcagctt	chrII:11534525-11540624	19	3537	3555	accgggtgtaaatcagctt	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377709_x2	23	1	23	atcaccgggtgaacacttgccgt	chrII:11534525-11540624	23	3284	3306	atcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_377731_x2	21	1	21	caccgggtgaaaaatcaccta	chrII:11534525-11540624	21	3761	3781	caccgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377741_x2	22	1	22	tcaccgggtgtaaatcagtttg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_377746_x1	22	1	22	cacgaaaaggggagcagaacga	chrII:11534525-11540624	22	20	41	cacgaaaaggggagcagaacga	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377749_x1	23	1	23	tcaccgggtgtacatcagctaag	chrII:11534525-11540624	23	3631	3653	tcaccgggtgtacatcagctaag	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377750_x1	20	1	20	agctgatttcgtcttggtca	chrII:11534525-11540624	20	3495	3514	agctgatttcgtcttggtaa	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377755_x1	18	1	18	cgggtgaaaattcgcatg	chrII:11534525-11540624	18	3169	3186	cgggtgaaaattcgcatg	+	0	mmmmmmmmmmmmmmmmmm
+seq_377759_x1	20	1	20	tcaccgggtgtacatcagtt	chrII:11534525-11540624	20	3631	3650	tcaccgggtgtacatcagct	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377760_x1	19	1	19	atcaccgggtgtacatcag	chrII:11534525-11540624	19	3630	3648	atcaccgggtgtacatcag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377761_x1	19	1	19	tcaccgggtgaaaattcgc	chrII:11534525-11540624	19	3165	3183	tcaccgggtgaaaattcgc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377766_x1	22	1	22	cagctgatttcgtcttggtaat	chrII:11534525-11540624	22	3494	3515	cagctgatttcgtcttggtaat	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377768_x1	21	1	21	accgggtggaaactagcagtg	chrII:11534525-11540624	21	3062	3082	accgggtggaaactagcagtg	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377773_x1	24	1	24	tcaccgggtgaacacttgcagtgg	chrII:11534525-11540624	24	3285	3308	tcaccgggtgaacacttgcagtgg	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_377774_x1	23	1	23	tgtgggtgtccgttgcggtgtta	chrII:11534525-11540624	23	3246	3268	tgtgggtgtccgttgcggtgcta	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_377775_x1	22	1	22	atcaccgggagaaaaactggag	chrII:11534525-11540624	22	3381	3402	atcaccgggagaaaaactggag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377782_x1	23	1	23	atcaccgggtgaacacttgctgt	chrII:11534525-11540624	23	3284	3306	atcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_377784_x1	23	1	23	atcaccgggtgtacatcatctaa	chrII:11534525-11540624	23	3630	3652	atcaccgggtgtacatcagctaa	+	1	mmmmmmmmmmmmmmmmmmMmmmm
+seq_377786_x1	21	1	21	tcaccgggtgaacacttgcgg	chrII:11534525-11540624	21	3285	3305	tcaccgggtgaacacttgcag	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_377789_x1	20	1	20	accgggtgaacacttgcatt	chrII:11534525-11540624	20	3287	3306	accgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377790_x1	20	1	20	tcaccgggtgaaaattcgta	chrII:11534525-11540624	20	3165	3184	tcaccgggtgaaaattcgca	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377791_x1	19	1	19	accgggtgaaaattcgcat	chrII:11534525-11540624	19	3167	3185	accgggtgaaaattcgcat	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377796_x1	18	1	18	taatatcgtccttcttca	chrII:11534525-11540624	18	5866	5883	taatatcgtccttcttca	+	0	mmmmmmmmmmmmmmmmmm
+seq_377801_x1	21	1	21	tggtttttctctgcagtgtta	chrII:11534525-11540624	21	3718	3738	tggtttttctctgcagtgata	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_377807_x1	25	1	25	tcaccgggtggaaactagcagaggc	chrII:11534525-11540624	25	3060	3084	tcaccgggtggaaactagcagtggc	+	1	mmmmmmmmmmmmmmmmmmmmmMmmm
+seq_377808_x1	22	1	22	tcaccgggtgtaaatcaggttg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_377816_x1	18	1	18	accgggtggaaactagca	chrII:11534525-11540624	18	3062	3079	accgggtggaaactagca	+	0	mmmmmmmmmmmmmmmmmm
+seq_377817_x1	22	1	22	ctatcaccgggtgtacatcagc	chrII:11534525-11540624	22	3628	3649	ctatcaccgggtgtacatcagc	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377819_x1	20	1	20	tcaccgggagaaaaactgga	chrII:11534525-11540624	20	3382	3401	tcaccgggagaaaaactgga	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377825_x1	20	1	20	caccgggtgtaaatcagctt	chrII:11534525-11540624	20	3536	3555	caccgggtgtaaatcagctt	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377832_x1	23	1	23	ctatcaccgggtgtacatcagtt	chrII:11534525-11540624	23	3628	3650	ctatcaccgggtgtacatcagct	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_377834_x1	21	1	21	aaaaggggagctggcactgtg	chrII:11534525-11540624	21	277	297	aaaaggggagctggcactgtg	-	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377840_x1	19	1	19	caaaaaggggatctgcgaa	chrII:11534525-11540624	19	340	358	caaaaaggggatctgcgaa	-	0	mmmmmmmmmmmmmmmmmmm
+seq_377840_x1	19	1	19	caaaaaggggatctgcgaa	chrII:11534525-11540624	19	54	72	caaaaaggggatctgcgaa	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377844_x1	21	1	21	atcaccgggtgaacacttgca	chrII:11534525-11540624	21	3284	3304	atcaccgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377849_x1	24	1	24	tcaccgggtgtaaatcagcttggc	chrII:11534525-11540624	24	3535	3558	tcaccgggtgtaaatcagcttggc	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_377854_x1	23	1	23	tggtttttctctgcagtgataga	chrII:11534525-11540624	23	3718	3740	tggtttttctctgcagtgataga	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377855_x1	22	1	22	atcaccgggtgaacacttgcag	chrII:11534525-11540624	22	3284	3305	atcaccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377858_x1	24	1	24	tcaccgggtgaacacttgcagtcg	chrII:11534525-11540624	24	3285	3308	tcaccgggtgaacacttgcagtgg	+	1	mmmmmmmmmmmmmmmmmmmmmmMm
+seq_377861_x1	18	1	18	ccgggtgaacacttgcag	chrII:11534525-11540624	18	3288	3305	ccgggtgaacacttgcag	+	0	mmmmmmmmmmmmmmmmmm
+seq_377862_x1	21	1	21	ctatcaccgggtgtacatcag	chrII:11534525-11540624	21	3628	3648	ctatcaccgggtgtacatcag	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377869_x1	20	1	20	accgggtgtacatcagctaa	chrII:11534525-11540624	20	3633	3652	accgggtgtacatcagctaa	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377870_x1	18	1	18	ccgggtgtaaatcagctt	chrII:11534525-11540624	18	3538	3555	ccgggtgtaaatcagctt	+	0	mmmmmmmmmmmmmmmmmm
+seq_377872_x1	18	1	18	cgggagaaaaactggagt	chrII:11534525-11540624	18	3386	3403	cgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmm
+seq_377877_x1	18	1	18	tcaccgggagaaaaactg	chrII:11534525-11540624	18	3382	3399	tcaccgggagaaaaactg	+	0	mmmmmmmmmmmmmmmmmm
+seq_377883_x1	19	1	19	tttcttgtccaatacatct	chrII:11534525-11540624	19	879	897	tttcttgtccaatacatct	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377884_x1	24	1	24	tcaccgggtgtaaatcagcttggc	chrII:11534525-11540624	24	3535	3558	tcaccgggtgtaaatcagcttggc	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_377893_x1	22	1	22	cgaaaaggggatctgcaaaaag	chrII:11534525-11540624	22	353	374	cgaaaaggggatctgcaaaaag	-	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377893_x1	22	1	22	cgaaaaggggatctgcaaaaag	chrII:11534525-11540624	22	39	60	cgaaaaggggatctgcaaaaag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377895_x1	24	1	24	atcaccgggagaaaaactggagta	chrII:11534525-11540624	24	3381	3404	atcaccgggagaaaaactggagta	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_377896_x1	26	1	26	tcaccgggtgaacacttgcagtggcc	chrII:11534525-11540624	26	3285	3310	tcaccgggtgaacacttgcagtggtc	+	1	mmmmmmmmmmmmmmmmmmmmmmmmMm
+seq_377898_x1	26	1	26	tcaccgggtggaaactagcagtgact	chrII:11534525-11540624	26	3060	3085	tcaccgggtggaaactagcagtggct	+	1	mmmmmmmmmmmmmmmmmmmmmmmMmm
+seq_377899_x1	19	1	19	caccgggtgaacacttgca	chrII:11534525-11540624	19	3286	3304	caccgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmmm
+seq_377906_x1	22	1	22	tcaccgggagaaaaactggatt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_377907_x1	21	1	21	tcaccgggtgaaaattcgcct	chrII:11534525-11540624	21	3165	3185	tcaccgggtgaaaattcgcat	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_377908_x1	21	1	21	caccgggtggaaactagcatt	chrII:11534525-11540624	21	3061	3081	caccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_377909_x1	20	1	20	cgaaaaggggagcagaacga	chrII:11534525-11540624	20	22	41	cgaaaaggggagcagaacga	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377913_x1	24	1	24	tcaccgggtggaaactagcagtgg	chrII:11534525-11540624	24	3060	3083	tcaccgggtggaaactagcagtgg	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_377914_x1	21	1	21	tcaccgggtgtaaatcagcct	chrII:11534525-11540624	21	3535	3555	tcaccgggtgtaaatcagctt	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_377915_x1	27	1	27	gaactatcaccgggtggaaactagcag	chrII:11534525-11540624	27	3054	3080	gaactatcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmmmmmmmm
+seq_377920_x1	22	1	22	tcaccgggtgtaaatcagctag	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_377927_x1	23	1	23	aaaggggagcagaacgaaaaggg	chrII:11534525-11540624	23	25	47	aaaggggagcagaacgaaaaggg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377931_x1	22	1	22	tgtgggtgtccgttgcggtgat	chrII:11534525-11540624	22	3246	3267	tgtgggtgtccgttgcggtgct	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_377936_x1	21	1	21	cgccaattttcgcttcagcgc	chrII:11534525-11540624	21	3124	3144	cgccaattttcgcttcagtgc	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_377941_x1	23	1	23	tatcaccgggtgaaaaatcacct	chrII:11534525-11540624	23	3758	3780	tatcaccgggtgaaaaatcacct	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_377953_x1	21	1	21	tggtttttctctgcagtgata	chrII:11534525-11540624	21	3718	3738	tggtttttctctgcagtgata	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377955_x1	18	1	18	gggagcagaacgaaaagg	chrII:11534525-11540624	18	367	384	gggagcagaacgaaaagg	-	0	mmmmmmmmmmmmmmmmmm
+seq_377955_x1	18	1	18	gggagcagaacgaaaagg	chrII:11534525-11540624	18	29	46	gggagcagaacgaaaagg	+	0	mmmmmmmmmmmmmmmmmm
+seq_377956_x1	21	1	21	tgctggtttcttccacagtgg	chrII:11534525-11540624	21	3021	3041	tgctggtttcttccacagtgg	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377966_x1	22	1	22	cgccaattttcgcttcagttct	chrII:11534525-11540624	22	3124	3145	cgccaattttcgcttcagtgct	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_377969_x1	23	1	23	agtggatgtatgccatgaagata	chrII:11534525-11540624	23	3591	3613	agtggatgtatgccatgatgata	+	1	mmmmmmmmmmmmmmmmmmMmmmm
+seq_377970_x1	22	1	22	atcaccgggtggaaactagcag	chrII:11534525-11540624	22	3059	3080	atcaccgggtggaaactagcag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_377977_x1	23	1	23	tcaccgggtgaacacttgcaggg	chrII:11534525-11540624	23	3285	3307	tcaccgggtgaacacttgcagtg	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_377987_x1	23	1	23	agtggatgtatgccatgatggta	chrII:11534525-11540624	23	3591	3613	agtggatgtatgccatgatgata	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_377988_x1	20	1	20	accgggtggaaactagcant	chrII:11534525-11540624	20	3062	3081	accgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_377991_x1	18	1	18	cgggtgaaaaatcaccta	chrII:11534525-11540624	18	3764	3781	cgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmm
+seq_377992_x1	21	1	21	gggtagaggacgacactgcca	chrII:11534525-11540624	21	5732	5752	gggtagaggacgacactgcca	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_377993_x1	20	1	20	tcaccgggtgaaaattcgca	chrII:11534525-11540624	20	3165	3184	tcaccgggtgaaaattcgca	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_377994_x1	19	1	19	caccgggtggaaactagca	chrII:11534525-11540624	19	3061	3079	caccgggtggaaactagca	+	0	mmmmmmmmmmmmmmmmmmm
+seq_378003_x1	22	1	22	caccgggtgaacacttgcagcg	chrII:11534525-11540624	22	3286	3307	caccgggtgaacacttgcagtg	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_378015_x1	22	1	22	ctctacaagttgtgatcgtgag	chrII:11534525-11540624	22	843	864	ctctacaagttgtgatcgtgag	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378022_x1	19	1	19	accgggagaaaaactggag	chrII:11534525-11540624	19	3384	3402	accgggagaaaaactggag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_378023_x1	21	1	21	agctgatttcgtcttggttat	chrII:11534525-11540624	21	3495	3515	agctgatttcgtcttggtaat	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_378026_x1	22	1	22	accgggtgaacacttgcagttg	chrII:11534525-11540624	22	3287	3308	accgggtgaacacttgcagtgg	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_378027_x1	22	1	22	gttgtgatcgtgaggccccttc	chrII:11534525-11540624	22	851	872	gttgtgatcgtgaggccccttc	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378031_x1	18	1	18	agctcgtcattgagatta	chrII:11534525-11540624	18	3517	3534	agctcgtcattgagatta	+	0	mmmmmmmmmmmmmmmmmm
+seq_378039_x1	24	1	24	tcaccgggtgtacatcagctaagg	chrII:11534525-11540624	24	3631	3654	tcaccgggtgtacatcagctaagg	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_378042_x1	23	1	23	cgccaattttcgcttcagggcta	chrII:11534525-11540624	23	3124	3146	cgccaattttcgcttcagtgcta	+	1	mmmmmmmmmmmmmmmmmmMmmmm
+seq_378043_x1	22	1	22	gaaaaggggagcagaacgaaga	chrII:11534525-11540624	22	23	44	gaaaaggggagcagaacgaaaa	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_378053_x1	21	1	21	acgaaaaggggagcagaacga	chrII:11534525-11540624	21	21	41	acgaaaaggggagcagaacga	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_378054_x1	22	1	22	ggtggtttttctctgcagtgat	chrII:11534525-11540624	22	3716	3737	ggtggtttttctctgcagtgat	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378055_x1	18	1	18	cgggagaaaaactggagt	chrII:11534525-11540624	18	3386	3403	cgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmm
+seq_378057_x1	22	1	22	tgcgcctttgaagagtactgta	chrII:11534525-11540624	22	1745	1766	tgcgcctttgaagagtactgta	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378058_x1	23	1	23	tcaccgggtgaaaattcgcaggg	chrII:11534525-11540624	23	3165	3187	tcaccgggtgaaaattcgcatgg	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_378060_x1	24	1	24	tatcaccgggtgaacacttgcagt	chrII:11534525-11540624	24	3283	3306	tatcaccgggtgaacacttgcagt	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_378062_x1	23	1	23	agtggatgtatgccatgatgcta	chrII:11534525-11540624	23	3591	3613	agtggatgtatgccatgatgata	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_378063_x1	23	1	23	tcaccgggagaaaaactggagaa	chrII:11534525-11540624	23	3382	3404	tcaccgggagaaaaactggagta	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_378064_x1	24	1	24	ggtggtttttctctgcagtgatag	chrII:11534525-11540624	24	3716	3739	ggtggtttttctctgcagtgatag	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_378065_x1	23	1	23	tcaccgggtgaaaattcgcatgg	chrII:11534525-11540624	23	3165	3187	tcaccgggtgaaaattcgcatgg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_378066_x1	23	1	23	ggtggtttttctctgcagcgata	chrII:11534525-11540624	23	3716	3738	ggtggtttttctctgcagtgata	+	1	mmmmmmmmmmmmmmmmmmMmmmm
+seq_378068_x1	26	1	26	tcaccgggtgaacacttgcagtggtc	chrII:11534525-11540624	26	3285	3310	tcaccgggtgaacacttgcagtggtc	+	0	mmmmmmmmmmmmmmmmmmmmmmmmmm
+seq_378075_x1	22	1	22	tcaccgggagaaaaactggagt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378078_x1	24	1	24	tcaccgggtggaaactagcagtgg	chrII:11534525-11540624	24	3060	3083	tcaccgggtggaaactagcagtgg	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_378079_x1	23	1	23	atcaccgggtggaaactagcagt	chrII:11534525-11540624	23	3059	3081	atcaccgggtggaaactagcagt	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_378081_x1	24	1	24	tcaccgggtgaacacttgcagtag	chrII:11534525-11540624	24	3285	3308	tcaccgggtgaacacttgcagtgg	+	1	mmmmmmmmmmmmmmmmmmmmmmMm
+seq_378083_x1	19	1	19	ccgggtgaaaaatcaccta	chrII:11534525-11540624	19	3763	3781	ccgggtgaaaaatcaccta	+	0	mmmmmmmmmmmmmmmmmmm
+seq_378089_x1	19	1	19	gggagcagaacgaaaaggg	chrII:11534525-11540624	19	366	384	gggagcagaacgaaaaggg	-	0	mmmmmmmmmmmmmmmmmmm
+seq_378089_x1	19	1	19	gggagcagaacgaaaaggg	chrII:11534525-11540624	19	29	47	gggagcagaacgaaaaggg	+	0	mmmmmmmmmmmmmmmmmmm
+seq_378093_x1	24	1	24	tcaccgggtggaaactagcagtgg	chrII:11534525-11540624	24	3060	3083	tcaccgggtggaaactagcagtgg	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_378105_x1	18	1	18	tgtgggtgtccgttgcgg	chrII:11534525-11540624	18	3246	3263	tgtgggtgtccgttgcgg	+	0	mmmmmmmmmmmmmmmmmm
+seq_378113_x1	26	1	26	tcaccgggtggaaactagcagtggat	chrII:11534525-11540624	26	3060	3085	tcaccgggtggaaactagcagtggct	+	1	mmmmmmmmmmmmmmmmmmmmmmmmMm
+seq_378115_x1	21	1	21	atcaccgggtggaaactagca	chrII:11534525-11540624	21	3059	3079	atcaccgggtggaaactagca	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_378119_x1	20	1	20	accgggtgaaaattcgcacg	chrII:11534525-11540624	20	3167	3186	accgggtgaaaattcgcatg	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_378120_x1	19	1	19	tcaccgggtgtaaatcagc	chrII:11534525-11540624	19	3535	3553	tcaccgggtgtaaatcagc	+	0	mmmmmmmmmmmmmmmmmmm
+seq_378126_x1	22	1	22	agtggatgtatgccatgatgat	chrII:11534525-11540624	22	3591	3612	agtggatgtatgccatgatgat	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378127_x1	22	1	22	tcaccgggtgtaaatcagcctg	chrII:11534525-11540624	22	3535	3556	tcaccgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_378129_x1	24	1	24	tcaccgggtgtacatcagctaaag	chrII:11534525-11540624	24	3631	3654	tcaccgggtgtacatcagctaagg	+	1	mmmmmmmmmmmmmmmmmmmmmmMm
+seq_378131_x1	23	1	23	ggtggtttttctctgcagtgata	chrII:11534525-11540624	23	3716	3738	ggtggtttttctctgcagtgata	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_378133_x1	25	1	25	tcaccgggtggaaactagcagtcgc	chrII:11534525-11540624	25	3060	3084	tcaccgggtggaaactagcagtggc	+	1	mmmmmmmmmmmmmmmmmmmmmmMmm
+seq_378135_x1	24	1	24	tcaccgggtggaaactagcagagg	chrII:11534525-11540624	24	3060	3083	tcaccgggtggaaactagcagtgg	+	1	mmmmmmmmmmmmmmmmmmmmmMmm
+seq_378143_x1	23	1	23	cgaaaaggggagcaacgaaaagg	chrII:11534525-11540624	23	99	121	cgaaaaggggagcaacgaaaagg	+	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_378143_x1	23	1	23	cgaaaaggggagcaacgaaaagg	chrII:11534525-11540624	23	292	314	cgaaaaggggagcaacgaaaagg	-	0	mmmmmmmmmmmmmmmmmmmmmmm
+seq_378145_x1	18	1	18	accgggtgaaaattcgca	chrII:11534525-11540624	18	3167	3184	accgggtgaaaattcgca	+	0	mmmmmmmmmmmmmmmmmm
+seq_378154_x1	21	1	21	tgtgggtgtccgttgcggtgc	chrII:11534525-11540624	21	3246	3266	tgtgggtgtccgttgcggtgc	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_378157_x1	24	1	24	tcaccgggagaaaaactggagttg	chrII:11534525-11540624	24	3382	3405	tcaccgggagaaaaactggagtag	+	1	mmmmmmmmmmmmmmmmmmmmmmMm
+seq_378158_x1	21	1	21	cgaaaaggggagcaacgaaaa	chrII:11534525-11540624	21	294	314	cgaaaaggggagcaacgaaaa	-	0	mmmmmmmmmmmmmmmmmmmmm
+seq_378158_x1	21	1	21	cgaaaaggggagcaacgaaaa	chrII:11534525-11540624	21	99	119	cgaaaaggggagcaacgaaaa	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_378166_x1	21	1	21	tcaccgggtgtacatcagcca	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	1	mmmmmmmmmmmmmmmmmmmMm
+seq_378167_x1	27	1	27	tcaccgggtggaaactagcagtcgctc	chrII:11534525-11540624	27	3060	3086	tcaccgggtggaaactagcagtggctc	+	1	mmmmmmmmmmmmmmmmmmmmmmMmmmm
+seq_378170_x1	23	1	23	cgccaattttcgcttcagcgcta	chrII:11534525-11540624	23	3124	3146	cgccaattttcgcttcagtgcta	+	1	mmmmmmmmmmmmmmmmmmMmmmm
+seq_378173_x1	25	1	25	gtggatgtatgccatgatgataaga	chrII:11534525-11540624	25	3592	3616	gtggatgtatgccatgatgataaga	+	0	mmmmmmmmmmmmmmmmmmmmmmmmm
+seq_378174_x1	22	1	22	tcaccgggagaaaaactggggt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_378175_x1	27	1	27	tcaccgggtggaaactagcagtggttc	chrII:11534525-11540624	27	3060	3086	tcaccgggtggaaactagcagtggctc	+	1	mmmmmmmmmmmmmmmmmmmmmmmmMmm
+seq_378176_x1	23	1	23	cgaaaaggggatctgcaaaaatg	chrII:11534525-11540624	23	352	374	cgaaaaggggatctgcaaaaacg	-	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_378176_x1	23	1	23	cgaaaaggggatctgcaaaaatg	chrII:11534525-11540624	23	39	61	cgaaaaggggatctgcaaaaagg	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_378179_x1	20	1	20	accgggtgtaaatcagctng	chrII:11534525-11540624	20	3537	3556	accgggtgtaaatcagcttg	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_378180_x1	21	1	21	caccgggtggaaactagcggt	chrII:11534525-11540624	21	3061	3081	caccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_378187_x1	18	1	18	ggggatctgcaaaaaggg	chrII:11534525-11540624	18	351	368	ggggatctgcaaaaaggg	-	0	mmmmmmmmmmmmmmmmmm
+seq_378187_x1	18	1	18	ggggatctgcaaaaaggg	chrII:11534525-11540624	18	45	62	ggggatctgcaaaaaggg	+	0	mmmmmmmmmmmmmmmmmm
+seq_378194_x1	26	1	26	tcaccgggtggaaactagcagtggct	chrII:11534525-11540624	26	3060	3085	tcaccgggtggaaactagcagtggct	+	0	mmmmmmmmmmmmmmmmmmmmmmmmmm
+seq_378195_x1	22	1	22	caccgggtgaacacttgcagtg	chrII:11534525-11540624	22	3286	3307	caccgggtgaacacttgcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378198_x1	21	1	21	tcaccgggtgtacatcaggta	chrII:11534525-11540624	21	3631	3651	tcaccgggtgtacatcagcta	+	1	mmmmmmmmmmmmmmmmmmMmm
+seq_378200_x1	23	1	23	tgtgggtgtccgttgcggtgcga	chrII:11534525-11540624	23	3246	3268	tgtgggtgtccgttgcggtgcta	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_378204_x1	21	1	21	ggggagcagaacgaaaagggg	chrII:11534525-11540624	21	365	385	ggggagcagaacgaaaagggg	-	0	mmmmmmmmmmmmmmmmmmmmm
+seq_378204_x1	21	1	21	ggggagcagaacgaaaagggg	chrII:11534525-11540624	21	28	48	ggggagcagaacgaaaagggg	+	0	mmmmmmmmmmmmmmmmmmmmm
+seq_378205_x1	20	1	20	tcaccgggtgaacacttgta	chrII:11534525-11540624	20	3285	3304	tcaccgggtgaacacttgca	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_378209_x1	19	1	19	accgggagaaaaactggag	chrII:11534525-11540624	19	3384	3402	accgggagaaaaactggag	+	0	mmmmmmmmmmmmmmmmmmm
+seq_378210_x1	22	1	22	tatcaccgggtgaacacttgca	chrII:11534525-11540624	22	3283	3304	tatcaccgggtgaacacttgca	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378212_x1	23	1	23	tcaccgggtggaaactagcaatg	chrII:11534525-11540624	23	3060	3082	tcaccgggtggaaactagcagtg	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_378215_x1	22	1	22	tcaccgggagaaaaactgnagt	chrII:11534525-11540624	22	3382	3403	tcaccgggagaaaaactggagt	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_378218_x1	23	1	23	tcaccgggtggaaactagcagcg	chrII:11534525-11540624	23	3060	3082	tcaccgggtggaaactagcagtg	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_378219_x1	22	1	22	accgggtgtaaatcagcttgtc	chrII:11534525-11540624	22	3537	3558	accgggtgtaaatcagcttggc	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_378228_x1	22	1	22	agctgatttcgtcttggtaata	chrII:11534525-11540624	22	3495	3516	agctgatttcgtcttggtaata	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378230_x1	23	1	23	atcaccgggtgaacacttgcggt	chrII:11534525-11540624	23	3284	3306	atcaccgggtgaacacttgcagt	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_378231_x1	20	1	20	tcaccgggtgtacatcaggt	chrII:11534525-11540624	20	3631	3650	tcaccgggtgtacatcagct	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_378239_x1	22	1	22	gaaaaggggagcagaacgaaaa	chrII:11534525-11540624	22	23	44	gaaaaggggagcagaacgaaaa	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378245_x1	22	1	22	aagagaatagaaccgacgatat	chrII:11534525-11540624	22	4274	4295	aagagaatagaaccgacgatat	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378246_x1	25	1	25	tcaccgggtgaacacttgcagtgtt	chrII:11534525-11540624	25	3285	3309	tcaccgggtgaacacttgcagtggt	+	1	mmmmmmmmmmmmmmmmmmmmmmmMm
+seq_378247_x1	20	1	20	accgggtggaaactagcaat	chrII:11534525-11540624	20	3062	3081	accgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_378249_x1	22	1	22	tcaccgggtgaaaaatcatcta	chrII:11534525-11540624	22	3760	3781	tcaccgggtgaaaaatcaccta	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_378250_x1	23	1	23	caccgggtgaacacttgcagttg	chrII:11534525-11540624	23	3286	3308	caccgggtgaacacttgcagtgg	+	1	mmmmmmmmmmmmmmmmmmmmmMm
+seq_378261_x1	25	1	25	tcaccgggtgaacacttgcagtggt	chrII:11534525-11540624	25	3285	3309	tcaccgggtgaacacttgcagtggt	+	0	mmmmmmmmmmmmmmmmmmmmmmmmm
+seq_378267_x1	19	1	19	accgggtgtacatcagcta	chrII:11534525-11540624	19	3633	3651	accgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmmm
+seq_378273_x1	20	1	20	tgtgggtgtccgttgcggtg	chrII:11534525-11540624	20	3246	3265	tgtgggtgtccgttgcggtg	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_378276_x1	24	1	24	tcaccgggtgaacacttgcagttg	chrII:11534525-11540624	24	3285	3308	tcaccgggtgaacacttgcagtgg	+	1	mmmmmmmmmmmmmmmmmmmmmmMm
+seq_378278_x1	22	1	22	atcaccgggtgtacatcaccta	chrII:11534525-11540624	22	3630	3651	atcaccgggtgtacatcagcta	+	1	mmmmmmmmmmmmmmmmmmMmmm
+seq_378285_x1	22	1	22	aacgaaaaggggatctggcact	chrII:11534525-11540624	22	112	133	aacgaaaaggggatctggcact	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378290_x1	22	1	22	agctgatttcgtcttggtagta	chrII:11534525-11540624	22	3495	3516	agctgatttcgtcttggtaata	+	1	mmmmmmmmmmmmmmmmmmmMmm
+seq_378291_x1	24	1	24	tcaccgggtgtacatcagctaagg	chrII:11534525-11540624	24	3631	3654	tcaccgggtgtacatcagctaagg	+	0	mmmmmmmmmmmmmmmmmmmmmmmm
+seq_378303_x1	22	1	22	caccgggtgaacacttgcagtg	chrII:11534525-11540624	22	3286	3307	caccgggtgaacacttgcagtg	+	0	mmmmmmmmmmmmmmmmmmmmmm
+seq_378310_x1	20	1	20	tcaccgggtgtacatcagct	chrII:11534525-11540624	20	3631	3650	tcaccgggtgtacatcagct	+	0	mmmmmmmmmmmmmmmmmmmm
+seq_378311_x1	18	1	18	ccgggtgtacatcagcta	chrII:11534525-11540624	18	3634	3651	ccgggtgtacatcagcta	+	0	mmmmmmmmmmmmmmmmmm
+seq_378312_x1	25	1	25	agtgtgggtgtccgttgcggtgcta	chrII:11534525-11540624	25	3244	3268	agtgtgggtgtccgttgcggtgcta	+	0	mmmmmmmmmmmmmmmmmmmmmmmmm
+seq_378315_x1	23	1	23	tgtgggtgtccgttgcggcgcta	chrII:11534525-11540624	23	3246	3268	tgtgggtgtccgttgcggtgcta	+	1	mmmmmmmmmmmmmmmmmmMmmmm
+seq_378319_x1	23	1	23	tcaccgggtggaaactagnagtg	chrII:11534525-11540624	23	3060	3082	tcaccgggtggaaactagcagtg	+	1	mmmmmmmmmmmmmmmmmmMmmmm
+seq_378320_x1	22	1	22	atcaccgggtgaaaaatcacat	chrII:11534525-11540624	22	3759	3780	atcaccgggtgaaaaatcacct	+	1	mmmmmmmmmmmmmmmmmmmmMm
+seq_378322_x1	23	1	23	tgtgggtgtccgttgcggtgata	chrII:11534525-11540624	23	3246	3268	tgtgggtgtccgttgcggtgcta	+	1	mmmmmmmmmmmmmmmmmmmmMmm
+seq_378323_x1	23	1	23	atcaccgggtggaaactagaagt	chrII:11534525-11540624	23	3059	3081	atcaccgggtggaaactagcagt	+	1	mmmmmmmmmmmmmmmmmmmMmmm
+seq_378327_x1	20	1	20	tcaccgggtgaacacttgaa	chrII:11534525-11540624	20	3285	3304	tcaccgggtgaacacttgca	+	1	mmmmmmmmmmmmmmmmmmMm
+seq_378329_x1	23	1	23	ccgggtggaaactagcagtggct	chrII:11534525-11540624	23	3063	3085	ccgggtggaaactagcagtggct	+	0	mmmmmmmmmmmmmmmmmmmmmmm
diff -r 000000000000 -r eaac585f172a test-data/result.bed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/result.bed	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,8 @@
+chrII:11534525-11540624	3020	3081	novel:chrII:11534525-11540624_7	102170.8	+	3020	3081	255,0,0
+chrII:11534525-11540624	3245	3306	known:chrII:11534525-11540624_11	61011.7	+	3245	3306	255,0,0
+chrII:11534525-11540624	3590	3652	known:chrII:11534525-11540624_17	17007.3	+	3590	3652	255,0,0
+chrII:11534525-11540624	3123	3186	known:chrII:11534525-11540624_9	7482.8	+	3123	3186	255,0,0
+chrII:11534525-11540624	3494	3556	known:chrII:11534525-11540624_15	1978.6	+	3494	3556	255,0,0
+chrII:11534525-11540624	3715	3781	known:chrII:11534525-11540624_19	84.4	+	3715	3781	255,0,0
+chrII:11534525-11540624	3340	3403	known:chrII:11534525-11540624_13	5.5	+	3340	3403	255,0,0
+chrII:11534525-11540624	3284	3362	known:chrII:11534525-11540624_12	-0.2	+	3284	3362	255,0,0
diff -r 000000000000 -r eaac585f172a test-data/result.csv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/result.csv	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,44 @@
+miRDeep2 score	novel miRNAs reported by miRDeep2	novel miRNAs, estimated false positives	novel miRNAs, estimated true positives	known miRNAs in species	known miRNAs in data	known miRNAs detected by miRDeep2	estimated signal-to-noise	excision gearing
+10	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+9	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+8	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+7	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+6	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+5	1	0 +/- 0	1 +/- 0 (71 +/- 46%)	7	6	6 (100%)	4.5	1
+4	1	0 +/- 0	1 +/- 0 (71 +/- 46%)	7	6	6 (100%)	4.5	1
+3	1	0 +/- 0	1 +/- 0 (71 +/- 46%)	7	6	6 (100%)	4.5	1
+2	1	0 +/- 0	1 +/- 0 (71 +/- 46%)	7	6	6 (100%)	4.5	1
+1	1	0 +/- 0	1 +/- 0 (68 +/- 47%)	7	6	6 (100%)	4	1
+0	1	1 +/- 1	1 +/- 1 (52 +/- 50%)	7	6	6 (100%)	2.2	1
+-1	1	1 +/- 1	1 +/- 1 (52 +/- 50%)	7	6	6 (100%)	2.5	1
+-2	1	1 +/- 1	0 +/- 0 (15 +/- 36%)	7	6	6 (100%)	1.9	1
+-3	1	1 +/- 1	0 +/- 0 (15 +/- 36%)	7	6	6 (100%)	1.9	1
+-4	1	1 +/- 1	0 +/- 0 (13 +/- 34%)	7	6	6 (100%)	1.8	1
+-5	1	2 +/- 1	0 +/- 0 (6 +/- 24%)	7	6	6 (100%)	1.7	1
+-6	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+-7	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+-8	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+-9	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+-10	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+
+
+
+novel miRNAs predicted by miRDeep2
+provisional id	miRDeep2 score	estimated probability that the miRNA candidate is a true positive	rfam alert	total read count	mature read count	loop read count	star read count	significant randfold p-value	miRBase miRNA	example miRBase miRNA with the same seed	UCSC browser	NCBI blastn	consensus mature sequence	consensus star sequence	consensus precursor sequence	precursor coordinate
+chrII:11534525-11540624_7	102170.8	83 +/- 38%	-	200394	200381	0	13	yes	-	cbr-miR-35	-	-	ucaccggguggaaacuagcagu	ugcugguuucuuccacaguggua	ugcugguuucuuccacagugguacuuuccauuagaacuaucaccggguggaaacuagcagu	chrII:11534525-11540624:3020..3081:+
+
+
+
+mature miRBase miRNAs detected by miRDeep2
+tag id	miRDeep2 score	estimated probability that the miRNA is a true positive	rfam alert	total read count	mature read count	loop read count	star read count	significant randfold p-value	mature miRBase miRNA	example miRBase miRNA with the same seed	UCSC browser	NCBI blastn	consensus mature sequence	consensus star sequence	consensus precursor sequence	precursor coordinate
+chrII:11534525-11540624_11	61011.7	83 +/- 38%	-	119663	119545	0	118	yes	cel-miR-37	cbr-miR-35	-	-	ucaccgggugaacacuugcagu	uguggguguccguugcggugcua	uguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagu	chrII:11534525-11540624:3245..3306:+
+chrII:11534525-11540624_17	17007.3	83 +/- 38%	-	33350	33300	0	50	yes	cel-miR-40	cbr-miR-35	-	-	ucaccggguguacaucagcuaa	aguggauguaugccaugaugaua	aguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaa	chrII:11534525-11540624:3590..3652:+
+chrII:11534525-11540624_9	7482.8	83 +/- 38%	-	14668	14617	0	51	yes	cel-miR-36	cbr-miR-35	-	-	ucaccgggugaaaauucgcaug	cgccaauuuucgcuucagugcua	cgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcaug	chrII:11534525-11540624:3123..3186:+
+chrII:11534525-11540624_15	1978.6	83 +/- 38%	-	3872	3014	1	857	yes	cel-miR-39	cbr-miR-35	-	-	ucaccggguguaaaucagcuug	agcugauuucgucuugguaaua	agcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuug	chrII:11534525-11540624:3494..3556:+
+chrII:11534525-11540624_19	84.4	83 +/- 38%	-	164	68	9	87	yes	cel-miR-41	-	-	-	ggugguuuuucucugcagugaua	ucaccgggugaaaaaucaccua	ggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccua	chrII:11534525-11540624:3715..3781:+
+chrII:11534525-11540624_13	5.5	71 +/- 46%	-	2140	2132	8	0	yes	cel-miR-38	cbr-miR-35	-	-	ucaccgggagaaaaacuggagu	uccgguuuuuuccguggugaua	uccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggagu	chrII:11534525-11540624:3340..3403:+
+chrII:11534525-11540624_12	-0.2	52 +/- 50%	-	119546	119545	1	0	no	cel-miR-37	cbr-miR-35	-	-	ucaccgggugaacacuugcagu	uguuccgguuuuuuccguggugaua	ucaccgggugaacacuugcagugguccucgugguuucucugugagccagguccuguuccgguuuuuuccguggugaua	chrII:11534525-11540624:3284..3362:+
+
+#miRBase miRNAs not detected by miRDeep2
+miRBase precursor id	total read count	mature read count(s)	star read count	remaining reads	UCSC browser	NCBI blastn	miRBase mature sequence(s)	miRBase star sequence(s)	miRBase precursor sequence
+4000	4000	0	0	-	-	aaugacacugguuaucuuuuccaucg	-	cgccggcaaugacacugguuaucuuuuccaucguggaaugccccccauugauuuuuuccccuuuucggggggaaaaaauuggaaacgagaaagguaucgggugucauagccggcg	
diff -r 000000000000 -r eaac585f172a test-data/survey.csv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/survey.csv	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,22 @@
+miRDeep2 score	novel miRNAs reported by miRDeep2	novel miRNAs, estimated false positives	novel miRNAs, estimated true positives	known miRNAs in species	known miRNAs in data	known miRNAs detected by miRDeep2	estimated signal-to-noise	excision gearing
+10	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+9	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+8	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+7	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+6	1	0 +/- 0	1 +/- 0 (83 +/- 38%)	7	6	5 (83%)	6.7	1
+5	1	0 +/- 0	1 +/- 0 (71 +/- 46%)	7	6	6 (100%)	4.5	1
+4	1	0 +/- 0	1 +/- 0 (71 +/- 46%)	7	6	6 (100%)	4.5	1
+3	1	0 +/- 0	1 +/- 0 (71 +/- 46%)	7	6	6 (100%)	4.5	1
+2	1	0 +/- 0	1 +/- 0 (71 +/- 46%)	7	6	6 (100%)	4.5	1
+1	1	0 +/- 0	1 +/- 0 (68 +/- 47%)	7	6	6 (100%)	4	1
+0	1	1 +/- 1	1 +/- 1 (52 +/- 50%)	7	6	6 (100%)	2.2	1
+-1	1	1 +/- 1	1 +/- 1 (52 +/- 50%)	7	6	6 (100%)	2.5	1
+-2	1	1 +/- 1	0 +/- 0 (15 +/- 36%)	7	6	6 (100%)	1.9	1
+-3	1	1 +/- 1	0 +/- 0 (15 +/- 36%)	7	6	6 (100%)	1.9	1
+-4	1	1 +/- 1	0 +/- 0 (13 +/- 34%)	7	6	6 (100%)	1.8	1
+-5	1	2 +/- 1	0 +/- 0 (6 +/- 24%)	7	6	6 (100%)	1.7	1
+-6	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+-7	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+-8	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+-9	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
+-10	1	3 +/- 1	0 +/- 0 (0 +/- 0%)	7	6	6 (100%)	1.5	1
diff -r 000000000000 -r eaac585f172a tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jan 27 09:06:24 2015 -0500
@@ -0,0 +1,40 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="perl" version="5.18.1">
+      <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bowtie" version="0.12.7">
+      <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="vienna_rna" version="1.8.5">
+      <repository changeset_revision="54e961ee33d4" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="pdf_api2" version="2.023">
+      <repository changeset_revision="b9b7fadfdb69" name="package_perl_pdf_api2_2_023" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="randfold" version="2.0">
+      <repository changeset_revision="b34d2c942c79" name="package_randfold_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="mirdeep2_quantifier" version="2.0">
+      <repository changeset_revision="2c039fc73f1f" name="mirdeep2_quantifier" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="mirdeep2" version="2.0">
+      <install version="1.0">
+          <actions>
+              <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/miRDeep2/miRDeep2.tar.gz</action>
+                <action type="move_directory_files">
+                  <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                  <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+
+MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data. Furthermore, it can be used for miRNA expression profiling across samples.
+
+        </readme>
+    </package>
+</tool_dependency>