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138 <tr height="200" valign="top">
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139 <td><font face="Times New Roman" size="8">
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140 <b><a href="http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html" target="_blank" style="color:Black;text-decoration:none" title="miRDeep2 homepage at MDC-Berlin" >miRDeep2</a></b>
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141
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142
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143 <br>
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144 <br>
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145 </font></td>
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146 <td> <a href="http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html" target="_blank" >
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147 <img src="http://www.mdc-berlin.de/de/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep.jpg" style="border-style: none" name="precursor miRNA" title="miRDeep2 homepage at MDC-Berlin" align=right alt="miRDeep home"/></a></td>
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148 </tr>
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149 </table>
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150
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151 <br>
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152 <br>
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153 <br><h2></h2><br>
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154 <font face="Times New Roman" size="2">
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155 <table border="1">
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156 <th><a href="" class="tooltip3">miRBase precursor id<span>Clicking this field will display a pdf of the structure and read signature of the miRNA.</span></a></th>
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157
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158 <th><a href="" class="tooltip3">total read count<span>this is the sum of read counts for the mature and star miRNAs.</span></a></th>
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159
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160 <th><a href="" class="tooltip3">mature read count(s)<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the mature miRNA, including 2 nts upstream and 5 nts downstream. If more than one mature sequence is given this will be a comma separated list. In parenthesis are normalized read counts shown.</span></a></th>
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161
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162 <th><a href="" class="tooltip3">star read count<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the star miRNA, including 2 nts upstream and 5 nts downstream. This field is empty unless a reference star miRNA was given as input to quantifier.pl. If more than one mature sequence is given this will be a comman separated list</span></a></th>
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163
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164 <th><a href="http://www.ncbi.nlm.nih.gov/entrez/utils/fref.fcgi?PrId=3051&itool=AbstractPlus-def&uid=15217813&nlmid=9808944&db=pubmed&url=http://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15217813" target="blank"class="tooltip3">remaining reads<span>this is the number of reads that did not map to any of the mature and star sequences</span></a></th>
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165
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166 <th><a href="" class="tooltip3">UCSC browser<span>if a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the miRNA precursor sequence against the reference genome.</span></a></th>
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167
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168 <th><a href="" class="tooltip3">NCBI blastn<span>clicking this field will initiate a NCBI blastn search of the miRNA precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences).</span></a></th>
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169
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170 <th><a href="" class="tooltip3">miRBase mature sequence(s)<span>this is/are the mature miRNA sequence(s) input to quantifier.pl.</span></a></th>
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171
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172 <th><a href="" class="tooltip3">miRBase star sequence(s)<span>this is/are the star miRNA sequence(s) input to quantifier.pl. This field is empty unless a reference star miRNA was given as input to quantifier.pl.</span></a></th>
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173
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174 <th><a href="" class="tooltip4">miRBase precursor sequence<span>this is the precursor miRNA sequence input to quantifier.pl.</span></a></th>
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175
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176 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-37.pdf">cel-mir-37</a></td>
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177 <td>118250</td>
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178 <td>
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179
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180
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181 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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182 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-37" target="_blank">cel-miR-37</a></td><td><nobr>118131.00</nobr></td><td><nobr>676208.96</nobr></td></tr>
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183 </table>
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184
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185 </td>
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186
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187
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188 <td>
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189 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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190 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
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191 </table>
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192
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193 </td>
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194
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195
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196
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197 <td nowrap="nowrap">119</td>
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198 <td> - </td>
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199 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucu&JOB_TITLE=cel-mir-37&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
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200 <td><table><tr><td>ucaccgggugaacacuugcagu</td></tr></table></td>
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201 <td><table><tr><td>-</td></tr></table></td>
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202 <td>uucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucu</td>
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203 </tr>
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204 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-40.pdf">cel-mir-40</a></td>
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205 <td>32947</td>
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206 <td>
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207
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208
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209 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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210 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-40" target="_blank">cel-miR-40</a></td><td><nobr>32878.00</nobr></td><td><nobr>188201.22</nobr></td></tr>
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211 </table>
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212
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213 </td>
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214
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215
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216 <td>
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217 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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218 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
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219 </table>
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220
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221 </td>
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222
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223
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224
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225 <td nowrap="nowrap">69</td>
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226 <td> - </td>
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227 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggu&JOB_TITLE=cel-mir-40&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
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228 <td><table><tr><td>ucaccggguguacaucagcuaa</td></tr></table></td>
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229 <td><table><tr><td>-</td></tr></table></td>
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230 <td>uccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggu</td>
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231 </tr>
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232 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-36.pdf">cel-mir-36</a></td>
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233 <td>14535</td>
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234 <td>
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235
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236
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237 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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238 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-36" target="_blank">cel-miR-36</a></td><td><nobr>14483.00</nobr></td><td><nobr>82904.02</nobr></td></tr>
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239 </table>
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240
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241 </td>
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242
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243
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244 <td>
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245 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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246 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
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247 </table>
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248
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249 </td>
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250
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251
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252
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253 <td nowrap="nowrap">52</td>
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254 <td> - </td>
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255 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=caccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcgga&JOB_TITLE=cel-mir-36&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
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256 <td><table><tr><td>ucaccgggugaaaauucgcaug</td></tr></table></td>
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257 <td><table><tr><td>-</td></tr></table></td>
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258 <td>caccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcgga</td>
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259 </tr>
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260 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-229.pdf">cel-mir-229</a></td>
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261 <td>4000</td>
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262 <td>
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263
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264
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265 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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266 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-229" target="_blank">cel-miR-229</a></td><td><nobr>4000.00</nobr></td><td><nobr>22896.92</nobr></td></tr>
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267 </table>
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268
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269 </td>
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270
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271
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272 <td>
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273 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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274 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
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275 </table>
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276
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277 </td>
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278
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279
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280
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281 <td nowrap="nowrap">0</td>
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282 <td> - </td>
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283 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cgccggcaaugacacugguuaucuuuuccaucguggaaugccccccauugauuuuuuccccuuuucggggggaaaaaauuggaaacgagaaagguaucgggugucauagccggcg&JOB_TITLE=cel-mir-229&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
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284 <td><table><tr><td>aaugacacugguuaucuuuuccaucg</td></tr></table></td>
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285 <td><table><tr><td>-</td></tr></table></td>
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286 <td>cgccggcaaugacacugguuaucuuuuccaucguggaaugccccccauugauuuuuuccccuuuucggggggaaaaaauuggaaacgagaaagguaucgggugucauagccggcg</td>
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287 </tr>
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288 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-39.pdf">cel-mir-39</a></td>
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289 <td>3852</td>
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290 <td>
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291
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292
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293 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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294 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-39" target="_blank">cel-miR-39</a></td><td><nobr>2994.00</nobr></td><td><nobr>17138.34</nobr></td></tr>
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295 </table>
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296
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297 </td>
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298
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299
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300 <td>
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301 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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302 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
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303 </table>
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304
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305 </td>
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306
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307
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308
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309 <td nowrap="nowrap">858</td>
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310 <td> - </td>
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311 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucugguguc&JOB_TITLE=cel-mir-39&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
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312 <td><table><tr><td>ucaccggguguaaaucagcuug</td></tr></table></td>
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313 <td><table><tr><td>-</td></tr></table></td>
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314 <td>uauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucugguguc</td>
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315 </tr>
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316 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-38.pdf">cel-mir-38</a></td>
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317 <td>2131</td>
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318 <td>
|
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319
|
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320
|
|
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321 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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322 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-38" target="_blank">cel-miR-38</a></td><td><nobr>2123.00</nobr></td><td><nobr>12152.54</nobr></td></tr>
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323 </table>
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324
|
|
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325 </td>
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326
|
|
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327
|
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328 <td>
|
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|
329 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
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330 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
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331 </table>
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332
|
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333 </td>
|
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334
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335
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336
|
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337 <td nowrap="nowrap">8</td>
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338 <td> - </td>
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339 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucau&JOB_TITLE=cel-mir-38&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
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340 <td><table><tr><td>ucaccgggagaaaaacuggagu</td></tr></table></td>
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|
|
341 <td><table><tr><td>-</td></tr></table></td>
|
|
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342 <td>ucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucau</td>
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|
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343 </tr>
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344 <tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-41.pdf">cel-mir-41</a></td>
|
|
|
345 <td>164</td>
|
|
|
346 <td>
|
|
|
347
|
|
|
348
|
|
|
349 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
|
|
|
350 <tr><td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-41" target="_blank">cel-miR-41</a></td><td><nobr>87.00</nobr></td><td><nobr>498.01</nobr></td></tr>
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|
|
351 </table>
|
|
|
352
|
|
|
353 </td>
|
|
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354
|
|
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355
|
|
|
356 <td>
|
|
|
357 <table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
|
|
|
358 <tr><td nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
|
|
|
359 </table>
|
|
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360
|
|
|
361 </td>
|
|
|
362
|
|
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363
|
|
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364
|
|
|
365 <td nowrap="nowrap">77</td>
|
|
|
366 <td> - </td>
|
|
|
367 <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccu&JOB_TITLE=cel-mir-41&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
|
|
|
368 <td><table><tr><td>ucaccgggugaaaaaucaccua</td></tr></table></td>
|
|
|
369 <td><table><tr><td>-</td></tr></table></td>
|
|
|
370 <td>gggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccu</td>
|
|
|
371 </tr>
|
|
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372 </table>
|
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373 </body>
|
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374 </html>
|
