Mercurial > repos > rnateam > mirdeep2_quantifier

diff test-data/expression_galaxy.html @ 0:2c039fc73f1f draft

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Imported from capsule None
author rnateam
date Tue, 27 Jan 2015 09:06:15 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/expression_galaxy.html	Tue Jan 27 09:06:15 2015 -0500
@@ -0,0 +1,374 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"
+    "http://www.w3.org/TR/html4/strict.dtd">
+    <html>
+    <head>
+    <title>miRDeep2</title>
+    <!-- CSS code -->
+    <style type="text/css">
+    body{
+      font: .75em Arial,sans-serif; 
+      background: #FFFFFF; 
+      color: #333333
+    }
+div#
+container
+{
+  width: 1000px; 
+  margin:0 auto
+  }
+h1{ 
+  color: #F60; 
+  margin: 1em 0 0; 
+    letter-spacing: -2px; 
+}
+p{
+  margin: 0 0 1.7em; 
+}
+
+a.tooltip{
+	text-decoration:none;
+	color:black;
+        font-weight:bold;
+}
+
+a.tooltip:hover
+{    position: relative;               
+     background: transparent;          
+	
+}  
+
+a.tooltip span  
+{    position: absolute;               
+     visibility: hidden;               
+
+     width: 20em;                      
+     top: 1.5em;             
+     background: #ffffdd;                    
+}
+
+a.tooltip:hover span  
+{    visibility: visible;   }
+
+
+a.tooltip2{
+	text-decoration:none;
+	color:black;
+        font-weight:bold;
+}
+
+a.tooltip2:hover
+{    position: relative;               
+     background: transparent;          
+	
+}  
+
+a.tooltip2 span  
+{    position: absolute;               
+     visibility: hidden;               
+
+     width: 20em;                      
+     top: 1.5em;left:-10em;             
+     background: #ffffdd;                    
+}
+
+a.tooltip2:hover span  
+{    visibility: visible;   }
+
+
+a.tooltip3{
+	text-decoration:none;
+	color:black;
+        font-weight:bold;
+}
+
+a.tooltip3:hover
+{    position: relative;               
+     background: transparent;          
+	
+}  
+
+a.tooltip3 span  
+{    position: absolute;               
+     visibility: hidden;               
+
+     width: 20em;                      
+     top: 3em;             
+     background: #ffffdd;                    
+}
+
+a.tooltip3:hover span  
+{    visibility: visible;   }
+
+
+a.tooltip4{
+	text-decoration:none;
+	color:black;
+        font-weight:bold;
+}
+
+a.tooltip4:hover
+{    position: relative;               
+     background: transparent;          
+	
+}  
+
+a.tooltip4 span  
+{    position: absolute;               
+     visibility: hidden;               
+
+     width: 20em;                      
+     top:3em;left:-10em;             
+     background: #ffffdd;                    
+}
+
+a.tooltip4:hover span  
+{    visibility: visible;   }
+
+
+
+</style>
+        
+    </head>
+    <body>
+    <table border="0" width="100%">
+    <colgroup>
+    <col width="5*">
+    <col width="5*">
+    </colgroup>
+    <tr height="200" valign="top">
+    <td><font face="Times New Roman" size="8">
+    <b><a href="http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html" target="_blank" style="color:Black;text-decoration:none" title="miRDeep2 homepage at MDC-Berlin" >miRDeep2</a></b>
+    
+    
+    <br>
+    <br>
+    </font></td>
+    <td> <a href="http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html" target="_blank" >
+    <img src="http://www.mdc-berlin.de/de/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep.jpg" style="border-style: none" name="precursor miRNA" title="miRDeep2 homepage at MDC-Berlin" align=right alt="miRDeep home"/></a></td>
+    </tr>
+    </table>
+  
+<br>
+    <br>
+    <br><h2></h2><br>
+    <font face="Times New Roman" size="2">
+    <table border="1">
+<th><a href="" class="tooltip3">miRBase precursor id<span>Clicking this field will display a pdf of the structure and read signature of the miRNA.</span></a></th>
+
+<th><a href="" class="tooltip3">total read count<span>this is the sum of read counts for the mature and star miRNAs.</span></a></th>
+
+<th><a href="" class="tooltip3">mature read count(s)<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the mature miRNA, including 2 nts upstream and 5 nts downstream. If more than one mature sequence is given this will be a comma separated list. In parenthesis are normalized read counts shown.</span></a></th>
+
+<th><a href="" class="tooltip3">star read count<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the star miRNA, including 2 nts upstream and 5 nts downstream. This field is empty unless a reference star miRNA was given as input to quantifier.pl. If more than one mature sequence is given this will be a comman separated list</span></a></th>
+
+<th><a href="http://www.ncbi.nlm.nih.gov/entrez/utils/fref.fcgi?PrId=3051&itool=AbstractPlus-def&uid=15217813&nlmid=9808944&db=pubmed&url=http://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15217813" target="blank"class="tooltip3">remaining reads<span>this is the number of reads that did not map to any of the mature and star sequences</span></a></th>
+
+<th><a href="" class="tooltip3">UCSC browser<span>if a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the miRNA precursor sequence against the reference genome.</span></a></th>
+
+<th><a href="" class="tooltip3">NCBI blastn<span>clicking this field will initiate a NCBI blastn search of the miRNA precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences).</span></a></th>
+
+<th><a href="" class="tooltip3">miRBase mature sequence(s)<span>this is/are the mature miRNA sequence(s) input to quantifier.pl.</span></a></th>
+
+<th><a href="" class="tooltip3">miRBase star sequence(s)<span>this is/are the star miRNA sequence(s) input to quantifier.pl. This field is empty unless a reference star miRNA was given as input to quantifier.pl.</span></a></th>
+
+<th><a href="" class="tooltip4">miRBase precursor sequence<span>this is the precursor miRNA sequence input to quantifier.pl.</span></a></th>
+
+<tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-37.pdf">cel-mir-37</a></td>
+            <td>118250</td>            
+            <td>
+
+
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-37" target="_blank">cel-miR-37</a></td><td><nobr>118131.00</nobr></td><td><nobr>676208.96</nobr></td></tr>
+</table>
+
+</td>
+
+
+<td>
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+</table>
+
+</td>
+
+
+           
+			<td nowrap="nowrap">119</td>
+            <td> - </td>
+            <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucu&JOB_TITLE=cel-mir-37&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+            <td><table><tr><td>ucaccgggugaacacuugcagu</td></tr></table></td>
+<td><table><tr><td>-</td></tr></table></td>
+<td>uucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucu</td>
+			</tr>     
+<tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-40.pdf">cel-mir-40</a></td>
+            <td>32947</td>            
+            <td>
+
+
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-40" target="_blank">cel-miR-40</a></td><td><nobr>32878.00</nobr></td><td><nobr>188201.22</nobr></td></tr>
+</table>
+
+</td>
+
+
+<td>
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+</table>
+
+</td>
+
+
+           
+			<td nowrap="nowrap">69</td>
+            <td> - </td>
+            <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggu&JOB_TITLE=cel-mir-40&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+            <td><table><tr><td>ucaccggguguacaucagcuaa</td></tr></table></td>
+<td><table><tr><td>-</td></tr></table></td>
+<td>uccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggu</td>
+			</tr>     
+<tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-36.pdf">cel-mir-36</a></td>
+            <td>14535</td>            
+            <td>
+
+
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-36" target="_blank">cel-miR-36</a></td><td><nobr>14483.00</nobr></td><td><nobr>82904.02</nobr></td></tr>
+</table>
+
+</td>
+
+
+<td>
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+</table>
+
+</td>
+
+
+           
+			<td nowrap="nowrap">52</td>
+            <td> - </td>
+            <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=caccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcgga&JOB_TITLE=cel-mir-36&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+            <td><table><tr><td>ucaccgggugaaaauucgcaug</td></tr></table></td>
+<td><table><tr><td>-</td></tr></table></td>
+<td>caccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcgga</td>
+			</tr>     
+<tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-229.pdf">cel-mir-229</a></td>
+            <td>4000</td>            
+            <td>
+
+
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-229" target="_blank">cel-miR-229</a></td><td><nobr>4000.00</nobr></td><td><nobr>22896.92</nobr></td></tr>
+</table>
+
+</td>
+
+
+<td>
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+</table>
+
+</td>
+
+
+           
+			<td nowrap="nowrap">0</td>
+            <td> - </td>
+            <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cgccggcaaugacacugguuaucuuuuccaucguggaaugccccccauugauuuuuuccccuuuucggggggaaaaaauuggaaacgagaaagguaucgggugucauagccggcg&JOB_TITLE=cel-mir-229&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+            <td><table><tr><td>aaugacacugguuaucuuuuccaucg</td></tr></table></td>
+<td><table><tr><td>-</td></tr></table></td>
+<td>cgccggcaaugacacugguuaucuuuuccaucguggaaugccccccauugauuuuuuccccuuuucggggggaaaaaauuggaaacgagaaagguaucgggugucauagccggcg</td>
+			</tr>     
+<tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-39.pdf">cel-mir-39</a></td>
+            <td>3852</td>            
+            <td>
+
+
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-39" target="_blank">cel-miR-39</a></td><td><nobr>2994.00</nobr></td><td><nobr>17138.34</nobr></td></tr>
+</table>
+
+</td>
+
+
+<td>
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+</table>
+
+</td>
+
+
+           
+			<td nowrap="nowrap">858</td>
+            <td> - </td>
+            <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucugguguc&JOB_TITLE=cel-mir-39&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+            <td><table><tr><td>ucaccggguguaaaucagcuug</td></tr></table></td>
+<td><table><tr><td>-</td></tr></table></td>
+<td>uauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucugguguc</td>
+			</tr>     
+<tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-38.pdf">cel-mir-38</a></td>
+            <td>2131</td>            
+            <td>
+
+
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-38" target="_blank">cel-miR-38</a></td><td><nobr>2123.00</nobr></td><td><nobr>12152.54</nobr></td></tr>
+</table>
+
+</td>
+
+
+<td>
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+</table>
+
+</td>
+
+
+           
+			<td nowrap="nowrap">8</td>
+            <td> - </td>
+            <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucau&JOB_TITLE=cel-mir-38&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+            <td><table><tr><td>ucaccgggagaaaaacuggagu</td></tr></table></td>
+<td><table><tr><td>-</td></tr></table></td>
+<td>ucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucau</td>
+			</tr>     
+<tr><td nowrap="nowrap"><a href="pdfs_galaxy/cel-mir-41.pdf">cel-mir-41</a></td>
+            <td>164</td>            
+            <td>
+
+
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=cel-mir-41" target="_blank">cel-miR-41</a></td><td><nobr>87.00</nobr></td><td><nobr>498.01</nobr></td></tr>
+</table>
+
+</td>
+
+
+<td>
+<table><tr><td WIDTH=55>id</td><td>seq</td><td>seq(norm)</td>
+<tr><td  nowrap="nowrap"><a>na</a></td><td><nobr>0</nobr></td><td><nobr>0</nobr></td></tr>
+</table>
+
+</td>
+
+
+           
+			<td nowrap="nowrap">77</td>
+            <td> - </td>
+            <td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccu&JOB_TITLE=cel-mir-41&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
+            <td><table><tr><td>ucaccgggugaaaaaucaccua</td></tr></table></td>
+<td><table><tr><td>-</td></tr></table></td>
+<td>gggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccu</td>
+			</tr>     
+</table>
+</body>
+</html>