Mercurial > repos > rnateam > mlocarna
comparison test-data/haca.snoRNA-default.stdout @ 0:59055c49a112 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mlocarna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
author | rnateam |
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date | Tue, 06 Dec 2016 11:39:14 -0500 |
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-1:000000000000 | 0:59055c49a112 |
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1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.8.12 | |
2 Copyright Sebastian Will | |
3 | |
4 Compute pair probs ... | |
5 Compute pairwise alignments ... | |
6 Perform progressive alignment ... | |
7 | |
8 | |
9 | |
10 ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG | |
11 ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG | |
12 ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG | |
13 ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA | |
14 #A1 ................................................................AAAAAA.................................................. | |
15 #A2 ................................................................123456.................................................. | |
16 | |
17 ACA7 AUUGGA--AGA---CACU-CUGCG-----ACA | |
18 ACA30 CAACUG--UCA---CUCA-AUGGG-----ACA | |
19 ACA5 GGAUAA--AUU---UGGU-UACAG-----ACA | |
20 ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA | |
21 #A1 .............................BBB | |
22 #A2 .............................123 | |
23 | |
24 alifold .((((((((........((((.(((((((......))))))).))))......))..)))))).............((((((.....((.....((((((((((((.....))))))))) | |
25 )))......)).....)).))))......... (-61.69 = -33.85 + -27.84) |