Mercurial > repos > rnateam > mlocarna

comparison test-data/haca.snoRNA-default.stdout @ 0:59055c49a112 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mlocarna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9
author rnateam
date Tue, 06 Dec 2016 11:39:14 -0500
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-1:000000000000 0:59055c49a112
1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.8.12
2 Copyright Sebastian Will
3
4 Compute pair probs ...
5 Compute pairwise alignments ...
6 Perform progressive alignment ...
7
8
9
10 ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG
11 ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG
12 ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG
13 ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA
14 #A1 ................................................................AAAAAA..................................................
15 #A2 ................................................................123456..................................................
16
17 ACA7 AUUGGA--AGA---CACU-CUGCG-----ACA
18 ACA30 CAACUG--UCA---CUCA-AUGGG-----ACA
19 ACA5 GGAUAA--AUU---UGGU-UACAG-----ACA
20 ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA
21 #A1 .............................BBB
22 #A2 .............................123
23
24 alifold .((((((((........((((.(((((((......))))))).))))......))..)))))).............((((((.....((.....((((((((((((.....)))))))))
25 )))......)).....)).))))......... (-61.69 = -33.85 + -27.84)