--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input_positive_pair.tsv	Wed Feb 22 07:32:08 2017 -0500
@@ -0,0 +1,874 @@
+AT2G46910	AT2G46915
+AT3G12250	AT3G12260
+AT5G50315	AT5G50320
+AT1G76780	AT1G76790
+AT3G10140	AT3G10150
+AT3G47550	AT3G47560
+AT3G17160	AT3G17170
+AT3G63490	AT3G63500
+AT1G24030	AT1G24040
+AT1G22840	AT1G22850
+AT2G19330	AT2G19340
+AT3G53240	AT3G53235
+AT4G29120	AT4G29130
+AT1G47410	AT1G47420
+AT3G03320	AT3G03330
+AT1G06450	AT1G06460
+AT3G21200	AT3G21210
+AT5G07110	AT5G07120
+AT1G73030	AT1G73040
+AT1G24600	AT1G24610
+AT1G64270	AT1G64280
+AT1G18090	AT1G18100
+AT2G20495	AT2G20500
+AT4G14700	AT4G14710
+AT3G07400	AT3G07410
+AT2G23940	AT2G23945
+AT5G20130	AT5G20140
+AT5G39970	AT5G39980
+AT2G29180	AT2G29190
+AT2G32800	AT2G32810
+AT4G17270	AT4G17280
+AT5G01715	AT5G01720
+AT4G16400	AT4G16410
+AT5G16840	AT5G16850
+AT5G05190	AT5G05200
+AT4G36720	AT4G36730
+AT5G18100	AT5G18110
+AT1G10522	AT1G10530
+AT1G72030	AT1G72040
+AT4G21160	AT4G21170
+AT4G35410	AT4G35420
+AT1G22800	AT1G22810
+AT1G50440	AT1G50450
+AT5G67530	AT5G67540
+AT3G07990	AT3G08000
+AT1G48560	AT1G48570
+AT3G04870	AT3G04880
+AT2G18340	AT2G18350
+AT1G07210	AT1G07220
+AT1G14350	AT1G14360
+AT5G27280	AT5G27290
+AT1G76690	AT1G76700
+AT4G28070	AT4G28080
+AT1G24340	AT1G24350
+AT2G04400	AT2G04410
+AT1G76050	AT1G76060
+AT4G38560	AT4G38570
+AT4G18370	AT4G18372
+AT3G20670	AT3G20680
+AT3G51390	AT3G51400
+AT3G26840	AT3G26850
+AT4G04460	AT4G04470
+AT5G67130	AT5G67140
+AT4G15720	AT4G15730
+AT1G79810	AT1G79820
+AT5G25930	AT5G25940
+AT1G15950	AT1G15960
+AT4G30480	AT4G30490
+AT1G28100	AT1G28110
+AT2G05710	AT2G05715
+AT5G23070	AT5G23080
+AT4G03180	AT4G03190
+AT2G03270	AT2G03280
+AT1G62790	AT1G62800
+AT5G43940	AT5G43950
+AT1G15740	AT1G15750
+AT5G41140	AT5G41150
+AT5G09270	AT5G09280
+AT5G04170	AT5G04180
+AT4G13580	AT4G13590
+AT3G28730	AT3G28740
+AT2G34380	AT2G34390
+AT3G17380	AT3G17390
+AT5G48730	AT5G48740
+AT3G56940	AT3G56950
+AT4G23610	AT4G23620
+AT2G32670	AT2G32680
+AT2G27460	AT2G27470
+AT1G75170	AT1G75180
+AT5G17990	AT5G18000
+AT5G24490	AT5G24500
+AT1G74430	AT1G74440
+AT4G26430	AT4G26440
+AT5G58620	AT5G58630
+AT4G17830	AT4G17840
+AT2G15900	AT2G15910
+AT2G45530	AT2G45540
+AT5G54680	AT5G54690
+AT5G03020	AT5G03030
+AT2G18280	AT2G18270
+AT1G54780	AT1G54790
+AT5G54080	AT5G54090
+AT4G03140	AT4G03150
+AT1G11530	AT1G11540
+AT3G55390	AT3G55400
+AT3G46950	AT3G46960
+AT1G15030	AT1G15040
+AT2G26920	AT2G26930
+AT5G64680	AT5G64685
+AT4G38170	AT4G38180
+AT3G62080	AT3G62090
+AT5G62670	AT5G62680
+AT5G10160	AT5G10170
+AT2G41110	AT2G41120
+AT3G60910	AT3G60920
+AT1G76260	AT1G76270
+AT1G22050	AT1G22060
+AT3G58510	AT3G58520
+AT1G30010	AT1G30020
+AT3G01920	AT3G01930
+AT3G47660	AT3G47670
+AT4G21300	AT4G21310
+AT4G18395	AT4G18400
+AT2G26640	AT2G26650
+AT3G49180	AT3G49190
+AT4G01790	AT4G01800
+AT2G27600	AT2G27610
+AT4G05450	AT4G05460
+AT5G61360	AT5G61370
+AT2G38010	AT2G38020
+AT1G14800	AT1G14810
+AT3G59110	AT3G59120
+AT3G24560	AT3G24570
+AT5G52840	AT5G52850
+AT2G19060	AT2G19070
+AT3G20730	AT3G20740
+AT1G54150	AT1G54160
+AT4G24380	AT4G24390
+AT1G04030	AT1G04040
+AT5G07830	AT5G07840
+AT4G20760	AT4G20770
+AT3G01830	AT3G01840
+AT2G37330	AT2G37340
+AT5G26710	AT5G26700
+AT5G01030	AT5G01040
+AT4G28220	AT4G28230
+AT5G45030	AT5G45040
+AT4G39235	AT4G39240
+AT5G47720	AT5G47730
+AT1G78770	AT1G78780
+AT5G59860	AT5G59850
+AT1G49960	AT1G49970
+AT5G67170	AT5G67180
+AT5G07240	AT5G07250
+AT5G08780	AT5G08790
+AT4G19650	AT4G19645
+AT5G65620	AT5G65630
+AT5G05580	AT5G05590
+AT3G16130	AT3G16140
+AT3G52210	AT3G52220
+AT5G50240	AT5G50250
+AT1G73380	AT1G73390
+AT2G39470	AT2G39480
+AT1G68935	AT1G68940
+AT5G08540	AT5G08550
+AT4G18770	AT4G18780
+AT5G41680	AT5G41685
+AT2G44750	AT2G44760
+AT3G11560	AT3G11570
+AT4G33355	AT4G33360
+AT2G34780	AT2G34790
+AT1G19710	AT1G19715
+AT2G43160	AT2G43180
+AT2G30950	AT2G30960
+AT4G31850	AT4G31860
+AT1G64185	AT1G64190
+AT2G42220	AT2G42230
+AT1G78130	AT1G78140
+AT3G50860	AT3G50850
+AT4G34080	AT4G34090
+AT5G58230	AT5G58240
+AT3G14100	AT3G14110
+AT5G65990	AT5G66000
+AT4G32560	AT4G32570
+AT2G22300	AT2G22310
+AT4G38225	AT4G38230
+AT3G07170	AT3G07180
+AT1G27060	AT1G27070
+AT1G31480	AT1G31490
+AT5G66280	AT5G66290
+AT3G10620	AT3G10630
+AT1G06790	AT1G06800
+AT1G76140	AT1G76150
+AT3G53110	AT3G53120
+AT5G18470	AT5G18475
+AT3G21810	AT3G21820
+AT5G35360	AT5G35370
+AT4G23885	AT4G23890
+AT5G60240	AT5G60230
+AT3G18620	AT3G18630
+AT5G47630	AT5G47635
+AT4G23800	AT4G23810
+AT3G08890	AT3G08900
+AT5G11350	AT5G11360
+AT5G18580	AT5G18590
+AT2G24440	AT2G24450
+AT1G60220	AT1G60230
+AT1G14150	AT1G14160
+AT5G01620	AT5G01630
+AT3G61350	AT3G61360
+AT5G39670	AT5G39680
+AT5G58640	AT5G58650
+AT2G34770	AT2G34760
+AT2G17972	AT2G17975
+AT2G35410	AT2G35420
+AT3G61160	AT3G61170
+AT5G64910	AT5G64920
+AT5G18210	AT5G18220
+AT3G20790	AT3G20800
+AT1G06060	AT1G06070
+AT2G29600	AT2G29590
+AT4G17010	AT4G17020
+AT1G70760	AT1G70770
+AT1G50010	AT1G50020
+AT5G20900	AT5G20910
+AT4G15130	AT4G15140
+AT1G79380	AT1G79390
+AT1G09750	AT1G09760
+AT5G51680	AT5G51690
+AT2G21960	AT2G21970
+AT2G02795	AT2G02800
+AT5G13980	AT5G13990
+AT5G20720	AT5G20730
+AT2G45360	AT2G45380
+AT4G01660	AT4G01670
+AT1G75080	AT1G75090
+AT5G64160	AT5G64150
+AT5G55930	AT5G55940
+AT2G45790	AT2G45800
+AT1G08260	AT1G08270
+AT1G68585	AT1G68590
+AT4G13270	AT4G13280
+AT1G12140	AT1G12150
+AT1G29670	AT1G29680
+AT4G19790	AT4G19780
+AT2G39930	AT2G39940
+AT1G05730	AT1G05720
+AT1G17810	AT1G17820
+AT5G03190	AT5G03200
+AT1G44160	AT1G44170
+AT3G52380	AT3G52390
+AT2G04270	AT2G04280
+AT5G57310	AT5G57300
+AT2G17120	AT2G17130
+AT4G28310	AT4G28320
+AT4G18120	AT4G18130
+AT4G09970	AT4G09980
+AT5G57150	AT5G57160
+AT5G62520	AT5G62530
+AT3G58590	AT3G58600
+AT5G19780	AT5G19790
+AT3G62830	AT3G62840
+AT3G43359	AT3G43358
+AT1G62720	AT1G62730
+AT4G31290	AT4G31280
+AT1G54360	AT1G54370
+AT5G54920	AT5G54930
+AT1G59710	AT1G59720
+AT2G01400	AT2G01410
+AT3G25910	AT3G25920
+AT1G33990	AT1G34000
+AT1G78570	AT1G78580
+AT1G49720	AT1G49730
+AT1G09090	AT1G09100
+AT3G58130	AT3G58140
+AT4G38360	AT4G38370
+AT5G22100	AT5G22110
+AT1G13740	AT1G13750
+AT5G24830	AT5G24840
+AT4G37190	AT4G37200
+AT5G53120	AT5G53130
+AT3G59970	AT3G59980
+AT5G24680	AT5G24690
+AT1G17840	AT1G17850
+AT1G75440	AT1G75450
+AT1G76450	AT1G76460
+AT4G12240	AT4G12250
+AT3G15450	AT3G15460
+AT5G02140	AT5G02150
+AT2G41705	AT2G41710
+AT1G09390	AT1G09400
+AT3G05080	AT3G05090
+AT1G68290	AT1G68300
+AT1G32600	AT1G32610
+AT5G47350	AT5G47360
+AT2G01270	AT2G01275
+AT5G59450	AT5G59460
+AT3G19680	AT3G19690
+AT5G55700	AT5G55710
+AT2G20770	AT2G20780
+AT1G69370	AT1G69380
+AT1G50480	AT1G50490
+AT3G02090	AT3G02100
+AT1G71430	AT1G71440
+AT3G59940	AT3G59950
+AT5G45930	AT5G45940
+AT5G19500	AT5G19510
+AT1G19230	AT1G19240
+AT5G64960	AT5G64970
+AT4G11590	AT4G11600
+AT1G63760	AT1G63770
+AT5G52420	AT5G52430
+AT1G68630	AT1G68640
+AT3G22200	AT3G22210
+AT4G30420	AT4G30430
+AT1G32870	AT1G32880
+AT4G17540	AT4G17550
+AT5G61290	AT5G61300
+AT1G59840	AT1G59850
+AT2G31790	AT2G31800
+AT2G20230	AT2G20240
+AT2G42680	AT2G42690
+AT3G49890	AT3G49900
+AT5G25760	AT5G25770
+AT5G05750	AT5G05760
+AT4G36170	AT4G36160
+AT1G01160	AT1G01170
+AT4G26900	AT4G26910
+AT2G38330	AT2G38340
+AT3G01350	AT3G01360
+AT3G60810	AT3G60820
+AT2G40720	AT2G40730
+AT1G26090	AT1G26100
+AT3G63130	AT3G63140
+AT1G03750	AT1G03760
+AT2G23080	AT2G23090
+AT5G03160	AT5G03170
+AT1G17100	AT1G17110
+AT5G16930	AT5G16940
+AT1G17070	AT1G17080
+AT1G12810	AT1G12820
+AT5G08270	AT5G08280
+AT4G33310	AT4G33300
+AT4G00750	AT4G00752
+AT1G51540	AT1G51550
+AT5G57035	AT5G57040
+AT4G09000	AT4G09010
+AT5G23235	AT5G23230
+AT3G10220	AT3G10230
+AT1G10490	AT1G10500
+AT4G31010	AT4G31020
+AT5G64190	AT5G64200
+AT5G47670	AT5G47680
+AT5G65090	AT5G65100
+AT3G56310	AT3G56320
+AT2G03680	AT2G03690
+AT5G60690	AT5G60700
+AT5G47970	AT5G47960
+AT2G15800	AT2G15790
+AT4G32930	AT4G32940
+AT5G04250	AT5G04260
+AT5G66130	AT5G66140
+AT1G15690	AT1G15700
+AT5G58560	AT5G58570
+AT3G46220	AT3G46230
+AT3G02030	AT3G02040
+AT5G56660	AT5G56670
+AT5G64240	AT5G64250
+AT1G43900	AT1G43910
+AT3G20220	AT3G20230
+AT2G34460	AT2G34470
+AT4G02700	AT4G02710
+AT5G64816	AT5G64820
+AT5G14430	AT5G14440
+AT3G16175	AT3G16180
+AT2G44065	AT2G44070
+AT3G55470	AT3G55480
+AT1G26290	AT1G26300
+AT3G56030	AT3G56040
+AT5G26200	AT5G26210
+AT2G31380	AT2G31390
+AT5G28232	AT5G28235
+AT2G40880	AT2G40890
+AT3G55830	AT3G55840
+AT2G41490	AT2G41500
+AT1G52500	AT1G52510
+AT1G69260	AT1G69270
+AT3G13610	AT3G13620
+AT2G25930	AT2G25940
+AT3G10350	AT3G10360
+AT3G06780	AT3G06790
+AT1G69200	AT1G69210
+AT1G33265	AT1G33270
+AT1G52690	AT1G52695
+AT4G24350	AT4G24370
+AT5G14120	AT5G14130
+AT3G07690	AT3G07700
+AT2G30820	AT2G30830
+AT1G10070	AT1G10090
+AT5G13930	AT5G13940
+AT1G72060	AT1G72070
+AT5G31989	AT5G31919
+AT5G43430	AT5G43440
+AT2G20710	AT2G20720
+AT3G47800	AT3G47810
+AT3G15260	AT3G15270
+AT1G13190	AT1G13195
+AT1G17860	AT1G17870
+AT4G10100	AT4G10110
+AT1G02420	AT1G02430
+AT4G10750	AT4G10760
+AT3G19800	AT3G19810
+AT2G19710	AT2G19720
+AT5G48800	AT5G48810
+AT2G47550	AT2G47560
+AT2G18390	AT2G18400
+AT1G04900	AT1G04910
+AT5G18780	AT5G18790
+AT4G28400	AT4G28405
+AT4G37260	AT4G37270
+AT5G47740	AT5G47750
+AT5G53330	AT5G53340
+AT5G16030	AT5G16040
+AT2G01340	AT2G01350
+AT1G27595	AT1G27600
+AT3G59300	AT3G59310
+AT1G25320	AT1G25330
+AT3G23070	AT3G23080
+AT1G19680	AT1G19690
+AT5G04410	AT5G04420
+AT3G49710	AT3G49720
+AT5G17530	AT5G17540
+AT4G11660	AT4G11670
+AT2G12855	AT2G12860
+AT2G33620	AT2G33630
+AT4G20030	AT4G20040
+AT1G20470	AT1G20480
+AT5G58120	AT5G58130
+AT1G50270	AT1G50280
+AT5G58320	AT5G58330
+AT5G24314	AT5G24316
+AT3G45290	AT3G45300
+AT2G44850	AT2G44860
+AT3G47460	AT3G47470
+AT1G45474	AT1G45545
+AT1G78280	AT1G78290
+AT3G02690	AT3G02700
+AT1G60670	AT1G60680
+AT5G05987	AT5G05990
+AT3G06950	AT3G06960
+AT5G46700	AT5G46710
+AT4G29210	AT4G29220
+AT1G48840	AT1G48850
+AT5G10830	AT5G10840
+AT4G08685	AT4G08690
+AT4G00360	AT4G00370
+AT5G67230	AT5G67240
+AT1G76390	AT1G76400
+AT4G25610	AT4G25620
+AT5G02760	AT5G02770
+AT4G32450	AT4G32460
+AT5G58210	AT5G58220
+AT3G09300	AT3G09310
+AT5G38895	AT5G38900
+AT4G39960	AT4G39970
+AT1G11265	AT1G11270
+AT1G74730	AT1G74740
+AT5G19750	AT5G19760
+AT5G60620	AT5G60630
+AT5G39400	AT5G39410
+AT5G48220	AT5G48230
+AT4G27030	AT4G27040
+AT1G36380	AT1G36390
+AT1G79690	AT1G79700
+AT4G33630	AT4G33640
+AT5G42760	AT5G42765
+AT5G13510	AT5G13520
+AT2G38470	AT2G38480
+AT1G20540	AT1G20550
+AT5G15790	AT5G15800
+AT1G74300	AT1G74310
+AT4G17520	AT4G17530
+AT1G12470	AT1G12480
+AT3G47440	AT3G47450
+AT3G56740	AT3G56750
+AT1G21370	AT1G21380
+AT1G24280	AT1G24290
+AT1G27710	AT1G27720
+AT2G33520	AT2G33530
+AT5G42310	AT5G42320
+AT1G31780	AT1G31790
+AT4G01895	AT4G01897
+AT5G08360	AT5G08370
+AT4G12830	AT4G12840
+AT1G06650	AT1G06660
+AT2G27480	AT2G27490
+AT2G25270	AT2G25280
+AT3G15350	AT3G15354
+AT2G23460	AT2G23470
+AT1G20300	AT1G20290
+AT3G52030	AT3G52040
+AT4G24220	AT4G24230
+AT5G22830	AT5G22840
+AT5G63280	AT5G63290
+AT3G56450	AT3G56460
+AT5G25340	AT5G25350
+AT5G10580	AT5G10590
+AT3G61370	AT3G61380
+AT2G42270	AT2G42280
+AT1G34630	AT1G34640
+AT4G26965	AT4G26960
+AT4G13360	AT4G13370
+AT5G03905	AT5G03910
+AT4G09750	AT4G09760
+AT5G42810	AT5G42820
+AT4G08320	AT4G08330
+AT1G14780	AT1G14790
+AT5G03930	AT5G03940
+AT1G78180	AT1G78190
+AT1G06560	AT1G06570
+AT3G63470	AT3G63480
+AT1G68980	AT1G68990
+AT4G26090	AT4G26100
+AT1G69060	AT1G69070
+AT5G13030	AT5G13050
+AT3G52850	AT3G52860
+AT4G23530	AT4G23540
+AT2G47380	AT2G47390
+AT1G03090	AT1G03100
+AT3G15190	AT3G15200
+AT1G31800	AT1G31810
+AT1G80400	AT1G80410
+AT5G48965	AT5G48970
+AT3G62030	AT3G62040
+AT3G19480	AT3G19490
+AT3G50950	AT3G50960
+AT5G23670	AT5G23680
+AT2G47780	AT2G47790
+AT3G61300	AT3G61310
+AT3G21060	AT3G21070
+AT2G35670	AT2G35680
+AT4G04320	AT4G04330
+AT4G34120	AT4G34131
+AT5G53815	AT5G53810
+AT5G53310	AT5G53320
+AT5G13770	AT5G13780
+AT1G74360	AT1G74370
+AT1G02170	AT1G02180
+AT1G21880	AT1G21890
+AT1G67940	AT1G67950
+AT1G18030	AT1G18040
+AT3G10060	AT3G10070
+AT3G04550	AT3G04560
+AT1G34210	AT1G34220
+AT5G64600	AT5G64610
+AT3G56900	AT3G56910
+AT4G01935	AT4G01940
+AT3G26470	AT3G26480
+AT2G20890	AT2G20900
+AT1G09850	AT1G09860
+AT1G15980	AT1G15990
+AT5G19940	AT5G19950
+AT4G17350	AT4G17360
+AT4G29510	AT4G29520
+AT1G09270	AT1G09280
+AT2G04880	AT2G04890
+AT2G22730	AT2G22740
+AT3G63170	AT3G63180
+AT1G21760	AT1G21770
+AT4G19140	AT4G19150
+AT3G09085	AT3G09090
+AT2G44350	AT2G44360
+AT4G08930	AT4G08940
+AT1G66510	AT1G66520
+AT3G55520	AT3G55530
+AT3G51520	AT3G51530
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