|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="segemehl" version="0.1.6">
|
|
|
4 <install version="1.0">
|
|
|
5 <actions>
|
|
|
6 <action type="download_by_url" target_filename="segemehl_0_1_6_1.tar.gz">http://www.bioinf.uni-leipzig.de/Software/segemehl/segemehl_0_1_6.tar.gz</action>
|
|
|
7 <action type="change_directory">segemehl</action>
|
|
|
8 <action type="shell_command">make</action>
|
|
|
9 <action type="move_file">
|
|
|
10 <source>segemehl.x</source>
|
|
|
11 <destination>$INSTALL_DIR</destination>
|
|
|
12 </action>
|
|
|
13 <action type="set_environment">
|
|
|
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
|
|
|
15 </action>
|
|
|
16 </actions>
|
|
|
17 </install>
|
|
|
18 <readme>
|
|
|
19 Short read mapping with gaps.
|
|
|
20 To compile segemehl a C-compiler is needed, usually GCC.
|
|
|
21 http://www.bioinf.uni-leipzig.de/Software/segemehl/
|
|
|
22
|
|
|
23 Please note that segemehl loads the whole index and genome files into memory.
|
|
|
24 Segemehl's index is around 45GB in size, so the memory usage of that tool is huge.
|
|
|
25 </readme>
|
|
|
26 </package>
|
|
|
27 </tool_dependency>
|
