Mercurial > repos > rnateam > paralyzer
comparison test-data/input.ini @ 0:4dbe81be8b81 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit 52c43a8b9958fc46ab0284638038e690f5a0da3a
| author | rnateam |
|---|---|
| date | Tue, 06 Dec 2016 03:28:59 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:4dbe81be8b81 |
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| 1 #all values are the default ones | |
| 2 BANDWIDTH=3 | |
| 3 CONVERSION=T>C | |
| 4 MINIMUM_READ_COUNT_PER_GROUP=5 | |
| 5 MINIMUM_READ_COUNT_PER_CLUSTER=2 | |
| 6 MINIMUM_READ_COUNT_FOR_KDE=3 | |
| 7 MINIMUM_CLUSTER_SIZE=11 | |
| 8 MINIMUM_CONVERSION_LOCATIONS_FOR_CLUSTER=2 | |
| 9 MINIMUM_CONVERSION_COUNT_FOR_CLUSTER=2 | |
| 10 MINIMUM_READ_COUNT_FOR_CLUSTER_INCLUSION=1 | |
| 11 MINIMUM_READ_LENGTH=20 | |
| 12 MAXIMUM_NUMBER_OF_NON_CONVERSION_MISMATCHES=1 | |
| 13 | |
| 14 EXTEND_BY_READ | |
| 15 | |
| 16 GENOME_2BIT_FILE=input.2bit | |
| 17 SAM_FILE=input.sam=COLLAPSED | |
| 18 | |
| 19 OUTPUT_DISTRIBUTIONS_FILE=out.distribution | |
| 20 OUTPUT_GROUPS_FILE=out.groups | |
| 21 OUTPUT_CLUSTERS_FILE=out.clusters | |
| 22 #OUTPUT_READS_FILE=out_PARalyzer_Utilized.sam |