Mercurial > repos > rnateam > paralyzer

diff test-data/input.ini @ 0:4dbe81be8b81 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit 52c43a8b9958fc46ab0284638038e690f5a0da3a
author rnateam
date Tue, 06 Dec 2016 03:28:59 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input.ini	Tue Dec 06 03:28:59 2016 -0500
@@ -0,0 +1,22 @@
+#all values are the default ones
+BANDWIDTH=3
+CONVERSION=T>C
+MINIMUM_READ_COUNT_PER_GROUP=5
+MINIMUM_READ_COUNT_PER_CLUSTER=2
+MINIMUM_READ_COUNT_FOR_KDE=3
+MINIMUM_CLUSTER_SIZE=11
+MINIMUM_CONVERSION_LOCATIONS_FOR_CLUSTER=2
+MINIMUM_CONVERSION_COUNT_FOR_CLUSTER=2
+MINIMUM_READ_COUNT_FOR_CLUSTER_INCLUSION=1
+MINIMUM_READ_LENGTH=20
+MAXIMUM_NUMBER_OF_NON_CONVERSION_MISMATCHES=1
+
+EXTEND_BY_READ
+
+GENOME_2BIT_FILE=input.2bit
+SAM_FILE=input.sam=COLLAPSED
+
+OUTPUT_DISTRIBUTIONS_FILE=out.distribution
+OUTPUT_GROUPS_FILE=out.groups
+OUTPUT_CLUSTERS_FILE=out.clusters
+#OUTPUT_READS_FILE=out_PARalyzer_Utilized.sam