Mercurial > repos > rnateam > paralyzer
view tool-data/lastz_seqs.loc.sample @ 1:f880686a9194 draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit d0cc3dca3aafecf306a0bfb0cd1268b4d5b3e244"
author | rnateam |
---|---|
date | Wed, 23 Oct 2019 19:07:22 -0400 |
parents | 4dbe81be8b81 |
children |
line wrap: on
line source
#This is a sample file distributed with Galaxy that enables tools #to use a directory of 2bit genome files for use with Lastz. You will #need to supply these files and then create a lastz_seqs.loc file #similar to this one (store it in this directory) that points to #the directories in which those files are stored. The lastz_seqs.loc #file has this format (white space characters are TAB characters): # #<unique_build_id> <display_name> <file_path> # #So, for example, if your lastz_seqs.loc began like this: # #hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg18.2bit #hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.2bit #mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.2bit # #then your /depot/data2/galaxy/twobit/ directory #would need to contain the following 2bit files: # #-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 hg18.2bit #-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit #-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit # #Your lastz_seqs.loc file should include an entry per line for #each file you have stored that you want to be available. Note that #your files should all have the extension '2bit'. # #Note that for backwards compatibility with workflows, the unique ID of #an entry must be the path that was in the original loc file, because that #is the value stored in the workflow for that parameter. #