Mercurial > repos > rnateam > rbpbench
diff macros.xml @ 0:7dd2835ce566 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 0e21bd630200c1f199db8ba5d83b81d4214fc59f
| author | rnateam |
|---|---|
| date | Sun, 03 Dec 2023 12:51:54 +0000 |
| parents | |
| children | 26c64157456b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Sun Dec 03 12:51:54 2023 +0000 @@ -0,0 +1,40 @@ +<macros> + <token name="@TOOL_VERSION@">0.7</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@profile@">22.05</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">rbpbench</requirement> + <requirement type="package" version="5.5.4">meme</requirement> + </requirements> + </xml> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">rbpbench</xref> + </xrefs> + </xml> + <!--xml name="citations"> + <citations> + <citation type="doi"></citation> + </citations> + </xml--> + <token name="@PREPARE_REF@"><![CDATA[ + ln -s -f + #if str($action_type.reference_genome.reference_genome_selector) == "history" + '$action_type.reference_genome.history_genome' + #else + '$action_type.reference_genome.builtin_genome.fields.path' + #end if + reference.fa && + ]]></token> + <token name="@COMMON_PARAMS@"><![CDATA[ + --ext $action_type.search_options.search_ext + --fimo-pval $action_type.search_options.search_fimo_pval + --bed-score-col $action_type.search_options.search_bed_score_col + $action_type.search_options.search_unstranded + $action_type.search_options.search_unstranded_ct + #if $action_type.search_options.fimo_nt_freqs_file: + --fimo-nt-freqs '$action_type.search_options.fimo_nt_freqs_file' + #end if + ]]></token> +</macros>