Mercurial > repos > rnateam > rcas

comparison readme.rst @ 1:7c7a2a381dfe draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
author rnateam
date Thu, 21 Jun 2018 15:07:13 -0400
parents aa9579837a2e
children
comparison
equal deleted inserted replaced
0:aa9579837a2e 1:7c7a2a381dfe
1 Important notes 1 Important notes
2 ---------------- 2 ----------------
3 3
4 - the dependencies of the tool are handled by the conda dependency resolver 4 - the dependencies of the tool are handled by the conda dependency resolver
5 5
6 - to install the dependencies, the galaxy administrator needs to configure to ensure the conda channels - bioconda, r, conda-forge, defaults 6 - to install the dependencies, the galaxy administrator needs to enable the conda channels - bioconda, r, conda-forge, defaults
7 7
8 - by default, the conda installation includes hg19 8 - by default, the conda installation includes hg19
9 9
10 - to enable analysis for mm9, ce10, dm3, the administrator needs to separately install the relevant packages from the channel bioconda 10 - to enable analysis for hg38, mm9, mm10, ce10, or dm3, the administrator needs to separately install the relevant packages from the bioconda channel
11
12 - bioconductor-bsgenome.hsapiens.ucsc.hg38
13 - bioconductor-bsgenome.mmusculus.ucsc.mm9
14 - bioconductor-bsgenome.mmusculus.ucsc.mm10
15 - bioconductor-bsgenome.celegans.ucsc.ce10
11 - bioconductor-bsgenome.dmelanogaster.ucsc.dm3 16 - bioconductor-bsgenome.dmelanogaster.ucsc.dm3
12 - bioconductor-bsgenome.celegans.ucsc.ce10
13 - bioconductor-bsgenome.mmusculus.ucsc.mm9
14 - bioconductor-org.mm.eg.db 17 - bioconductor-org.mm.eg.db
15 - bioconductor-org.ce.eg.db 18 - bioconductor-org.ce.eg.db
16 - bioconductor-org.dm.eg.db 19 - bioconductor-org.dm.eg.db
20