Mercurial > repos > rnateam > rcas

diff test-data/goBP.data.tsv @ 1:7c7a2a381dfe draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 5c6486dead878a8c9521e1d6d50b3a537a2ec2b0
author rnateam
date Thu, 21 Jun 2018 15:07:13 -0400
parents aa9579837a2e
children
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--- a/test-data/goBP.data.tsv	Thu Apr 13 12:36:05 2017 -0400
+++ b/test-data/goBP.data.tsv	Thu Jun 21 15:07:13 2018 -0400
@@ -1,33 +1,39 @@
 Term	Significant	Expected	bonferroni	bh	foldEnrichment
-GO:0006139	nucleobase-containing compound metabolic...	6	4.2	1	0.596363636363636	1.43
-GO:0006725	cellular aromatic compound metabolic pro...	6	4.2	1	0.596363636363636	1.43
-GO:0046483	heterocycle metabolic process	6	4.2	1	0.596363636363636	1.43
-GO:1901360	organic cyclic compound metabolic proces...	6	4.2	1	0.596363636363636	1.43
-GO:0019538	protein metabolic process	6	4.4	1	0.596363636363636	1.36
-GO:0050794	regulation of cellular process	8	6	1	0.596363636363636	1.33
-GO:0044260	cellular macromolecule metabolic process	7	5.4	1	0.596363636363636	1.3
-GO:0034641	cellular nitrogen compound metabolic pro...	6	4.6	1	0.596363636363636	1.3
-GO:0050789	regulation of biological process	8	6.2	1	0.596363636363636	1.29
-GO:0065007	biological regulation	8	6.2	1	0.596363636363636	1.29
-GO:0009059	macromolecule biosynthetic process	5	4	1	0.596363636363636	1.25
-GO:0031323	regulation of cellular metabolic process	5	4	1	0.596363636363636	1.25
-GO:0034645	cellular macromolecule biosynthetic proc...	5	4	1	0.596363636363636	1.25
-GO:0044710	single-organism metabolic process	5	4	1	0.596363636363636	1.25
-GO:0080090	regulation of primary metabolic process	5	4	1	0.596363636363636	1.25
-GO:0043170	macromolecule metabolic process	7	5.8	1	0.596363636363636	1.21
-GO:0006807	nitrogen compound metabolic process	6	5	1	0.596363636363636	1.2
-GO:0050896	response to stimulus	6	5	1	0.596363636363636	1.2
-GO:0044271	cellular nitrogen compound biosynthetic ...	5	4.2	1	0.596363636363636	1.19
-GO:0051716	cellular response to stimulus	5	4.2	1	0.596363636363636	1.19
-GO:0044237	cellular metabolic process	8	6.8	1	0.596363636363636	1.18
-GO:0019222	regulation of metabolic process	5	4.4	1	0.653913043478261	1.14
-GO:0009987	cellular process	10	9.2	1	0.596363636363636	1.09
-GO:0008152	metabolic process	8	7.6	1	0.687407407407407	1.05
-GO:0009058	biosynthetic process	5	4.8	1	0.687407407407407	1.04
-GO:0044249	cellular biosynthetic process	5	4.8	1	0.687407407407407	1.04
-GO:1901576	organic substance biosynthetic process	5	4.8	1	0.687407407407407	1.04
-GO:0044238	primary metabolic process	7	7	1	0.728275862068966	1
-GO:0071704	organic substance metabolic process	7	7	1	0.728275862068966	1
-GO:0008150	biological_process	10	10	1	1	1
-GO:0044699	single-organism process	8	8.2	1	0.774193548387097	0.98
-GO:0044763	single-organism cellular process	8	8.2	1	0.774193548387097	0.98
+GO:0010467	gene expression	6	4.15	1	0.686923076923077	1.45
+GO:0006139	nucleobase-containing compound metabolic...	6	4.36	1	0.686923076923077	1.38
+GO:0006464	cellular protein modification process	6	4.36	1	0.686923076923077	1.38
+GO:0006725	cellular aromatic compound metabolic pro...	6	4.36	1	0.686923076923077	1.38
+GO:0036211	protein modification process	6	4.36	1	0.686923076923077	1.38
+GO:0046483	heterocycle metabolic process	6	4.36	1	0.686923076923077	1.38
+GO:1901360	organic cyclic compound metabolic proces...	6	4.36	1	0.686923076923077	1.38
+GO:0009059	macromolecule biosynthetic process	6	4.57	1	0.686923076923077	1.31
+GO:0034645	cellular macromolecule biosynthetic proc...	6	4.57	1	0.686923076923077	1.31
+GO:0043412	macromolecule modification	6	4.57	1	0.686923076923077	1.31
+GO:0044271	cellular nitrogen compound biosynthetic ...	6	4.77	1	0.686923076923077	1.26
+GO:0050896	response to stimulus	7	5.6	1	0.686923076923077	1.25
+GO:0050789	regulation of biological process	8	6.43	1	0.686923076923077	1.24
+GO:0065007	biological regulation	8	6.64	1	0.686923076923077	1.2
+GO:0034641	cellular nitrogen compound metabolic pro...	6	4.98	1	0.686923076923077	1.2
+GO:0051171	regulation of nitrogen compound metaboli...	5	4.15	1	0.686923076923077	1.2
+GO:0060255	regulation of macromolecule metabolic pr...	5	4.15	1	0.686923076923077	1.2
+GO:0044267	cellular protein metabolic process	6	5.19	1	0.686923076923077	1.16
+GO:0019222	regulation of metabolic process	5	4.36	1	0.686923076923077	1.15
+GO:0031323	regulation of cellular metabolic process	5	4.36	1	0.686923076923077	1.15
+GO:0080090	regulation of primary metabolic process	5	4.36	1	0.686923076923077	1.15
+GO:0050794	regulation of cellular process	7	6.23	1	0.686923076923077	1.12
+GO:0009058	biosynthetic process	6	5.4	1	0.686923076923077	1.11
+GO:0044249	cellular biosynthetic process	6	5.4	1	0.686923076923077	1.11
+GO:1901576	organic substance biosynthetic process	6	5.4	1	0.686923076923077	1.11
+GO:0009987	cellular process	11	9.96	1	0.686923076923077	1.1
+GO:0051716	cellular response to stimulus	5	4.57	1	0.707586206896552	1.09
+GO:0019538	protein metabolic process	6	5.6	1	0.707586206896552	1.07
+GO:0044260	cellular macromolecule metabolic process	7	6.64	1	0.707586206896552	1.05
+GO:0008150	biological_process	11	11	1	1	1
+GO:0043170	macromolecule metabolic process	7	7.06	1	0.836	0.99
+GO:1901564	organonitrogen compound metabolic proces...	6	6.43	1	0.87875	0.93
+GO:0032501	multicellular organismal process	4	4.36	1	0.87875	0.92
+GO:0006807	nitrogen compound metabolic process	7	7.68	1	0.932727272727273	0.91
+GO:0044237	cellular metabolic process	7	7.89	1	0.944864864864865	0.89
+GO:0008152	metabolic process	7	8.3	1	0.944864864864865	0.84
+GO:0044238	primary metabolic process	7	8.3	1	0.944864864864865	0.84
+GO:0071704	organic substance metabolic process	7	8.3	1	0.944864864864865	0.84